data_A1H3N # _chem_comp.id A1H3N _chem_comp.name "(2~{R},4~{R})-4-(2-methanimidamidoethylsulfanyl)-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Imipenem _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-05 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RWR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3N N N1 N 0 1 N N N N N N 16.395 10.786 20.602 -2.063 0.958 0.346 N A1H3N 1 A1H3N C C1 C 0 1 N N N N N N 12.321 8.705 22.586 -5.071 -1.961 -0.728 C A1H3N 2 A1H3N O O1 O 0 1 N N N N N N 14.430 8.656 23.777 -4.766 -0.931 1.437 O A1H3N 3 A1H3N C1 C2 C 0 1 N N R N N N 13.650 9.390 22.823 -4.263 -0.959 0.100 C1 A1H3N 4 A1H3N C10 C3 C 0 1 N N N N N N 18.156 10.682 18.964 -0.708 2.896 -0.256 C10 A1H3N 5 A1H3N C11 C4 C 0 1 N N N N N N 13.820 10.540 20.730 -2.262 -1.411 -1.293 C11 A1H3N 6 A1H3N C2 C5 C 0 1 N N S N N N 14.480 9.414 21.555 -2.793 -1.381 0.117 C2 A1H3N 7 A1H3N C3 C6 C 0 1 N N R N N N 15.863 10.033 21.756 -1.985 -0.379 0.945 C3 A1H3N 8 A1H3N C4 C7 C 0 1 N N N N N N 16.780 8.837 21.986 -0.482 -0.746 0.916 C4 A1H3N 9 A1H3N C5 C8 C 0 1 N N N N N N 17.436 10.184 20.166 -0.930 1.538 0.296 C5 A1H3N 10 A1H3N C6 C9 C 0 1 N N R N N N 17.856 8.940 20.898 0.160 0.662 0.874 C6 A1H3N 11 A1H3N C7 C10 C 0 1 N N N N N N 17.679 6.140 20.760 2.784 -0.405 0.682 C7 A1H3N 12 A1H3N C8 C11 C 0 1 N N N N N N 18.210 4.874 20.112 4.130 -0.407 -0.046 C8 A1H3N 13 A1H3N C9 C12 C 0 1 N N N N N N 19.423 4.761 17.927 6.349 -1.429 0.202 C9 A1H3N 14 A1H3N N1 N2 N 0 1 N N N N N N 19.325 5.164 19.216 5.071 -1.271 0.671 N1 A1H3N 15 A1H3N N2 N3 N 0 1 N N N N N N 18.456 4.051 17.425 6.724 -0.816 -0.873 N2 A1H3N 16 A1H3N O1 O2 O 0 1 N N N N N N 17.408 10.905 17.914 -1.722 3.556 -0.846 O1 A1H3N 17 A1H3N O2 O3 O 0 1 N N N N N N 19.357 10.869 18.986 0.387 3.412 -0.176 O2 A1H3N 18 A1H3N O3 O4 O 0 1 N N N N N N 13.380 10.494 19.576 -1.829 -2.440 -1.753 O3 A1H3N 19 A1H3N S S1 S 0 1 N N N N N N 17.896 7.573 19.680 1.618 0.665 -0.205 S A1H3N 20 A1H3N H6 H1 H 0 1 N N N N N N 11.737 9.281 21.853 -6.119 -1.661 -0.740 H6 A1H3N 21 A1H3N H5 H2 H 0 1 N N N N N N 12.496 7.690 22.200 -4.687 -1.982 -1.748 H5 A1H3N 22 A1H3N H4 H3 H 0 1 N N N N N N 11.765 8.646 23.533 -4.983 -2.953 -0.285 H4 A1H3N 23 A1H3N H7 H4 H 0 1 N N N N N N 15.260 9.098 23.915 -4.719 -1.782 1.893 H7 A1H3N 24 A1H3N H H5 H 0 1 N N N N N N 13.478 10.419 23.170 -4.352 0.033 -0.343 H A1H3N 25 A1H3N H18 H6 H 0 1 N N N N N N 13.731 11.494 21.227 -2.269 -0.512 -1.891 H18 A1H3N 26 A1H3N H3 H7 H 0 1 N N N N N N 14.506 8.449 21.027 -2.704 -2.373 0.560 H3 A1H3N 27 A1H3N H1 H8 H 0 1 N N N N N N 15.854 10.669 22.654 -2.350 -0.356 1.972 H1 A1H3N 28 A1H3N H9 H9 H 0 1 N N N N N N 17.236 8.887 22.986 -0.191 -1.284 1.818 H9 A1H3N 29 A1H3N H8 H10 H 0 1 N N N N N N 16.219 7.896 21.886 -0.235 -1.319 0.022 H8 A1H3N 30 A1H3N H2 H11 H 0 1 N N N N N N 18.862 9.036 21.332 0.424 0.992 1.878 H2 A1H3N 31 A1H3N H11 H12 H 0 1 N N N N N N 18.221 6.315 21.701 2.389 -1.420 0.719 H11 A1H3N 32 A1H3N H10 H13 H 0 1 N N N N N N 16.608 6.011 20.973 2.920 -0.031 1.697 H10 A1H3N 33 A1H3N H12 H14 H 0 1 N N N N N N 18.552 4.185 20.899 3.993 -0.781 -1.061 H12 A1H3N 34 A1H3N H13 H15 H 0 1 N N N N N N 17.401 4.400 19.536 4.524 0.609 -0.083 H13 A1H3N 35 A1H3N H15 H16 H 0 1 N N N N N N 20.284 5.023 17.330 7.043 -2.066 0.730 H15 A1H3N 36 A1H3N H14 H17 H 0 1 N N N N N N 20.080 5.706 19.585 4.790 -1.731 1.477 H14 A1H3N 37 A1H3N H16 H18 H 0 1 N N N N N N 18.627 3.807 16.470 7.628 -0.928 -1.205 H16 A1H3N 38 A1H3N H17 H19 H 0 1 N N N N N N 17.949 11.226 17.202 -1.529 4.439 -1.191 H17 A1H3N 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3N C C1 SING N N 1 A1H3N O C1 SING N N 2 A1H3N C1 C2 SING N N 3 A1H3N C3 C2 SING N N 4 A1H3N C3 C4 SING N N 5 A1H3N N C3 SING N N 6 A1H3N C5 N DOUB N N 7 A1H3N C6 C5 SING N N 8 A1H3N C4 C6 SING N N 9 A1H3N S C6 SING N N 10 A1H3N C7 S SING N N 11 A1H3N C8 C7 SING N N 12 A1H3N N1 C8 SING N N 13 A1H3N C9 N1 SING N N 14 A1H3N N2 C9 DOUB N N 15 A1H3N C10 C5 SING N N 16 A1H3N O1 C10 SING N N 17 A1H3N O2 C10 DOUB N N 18 A1H3N C2 C11 SING N N 19 A1H3N C11 O3 DOUB N N 20 A1H3N C H6 SING N N 21 A1H3N C H5 SING N N 22 A1H3N C H4 SING N N 23 A1H3N O H7 SING N N 24 A1H3N C1 H SING N N 25 A1H3N C11 H18 SING N N 26 A1H3N C2 H3 SING N N 27 A1H3N C3 H1 SING N N 28 A1H3N C4 H9 SING N N 29 A1H3N C4 H8 SING N N 30 A1H3N C6 H2 SING N N 31 A1H3N C7 H11 SING N N 32 A1H3N C7 H10 SING N N 33 A1H3N C8 H12 SING N N 34 A1H3N C8 H13 SING N N 35 A1H3N C9 H15 SING N N 36 A1H3N N1 H14 SING N N 37 A1H3N N2 H16 SING N N 38 A1H3N O1 H17 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3N InChI InChI 1.06 "InChI=1S/C12H19N3O4S/c1-7(17)8(5-16)9-4-10(11(15-9)12(18)19)20-3-2-14-6-13/h5-10,17H,2-4H2,1H3,(H2,13,14)(H,18,19)/t7-,8-,9-,10-/m1/s1" A1H3N InChIKey InChI 1.06 NIJGFQHESQFJAG-ZYUZMQFOSA-N A1H3N SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@H]1C[C@@H](SCCNC=N)C(=N1)C(O)=O" A1H3N SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1C[CH](SCCNC=N)C(=N1)C(O)=O" A1H3N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/NCCS[C@@H]1C[C@@H](N=C1C(=O)O)[C@H](C=O)[C@@H](C)O" A1H3N SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C=O)C1CC(C(=N1)C(=O)O)SCCNC=N)O" # _pdbx_chem_comp_identifier.comp_id A1H3N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{R})-4-(2-methanimidamidoethylsulfanyl)-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H3N _pdbx_chem_comp_synonyms.name Imipenem _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3N "Create component" 2024-02-05 PDBE A1H3N "Modify PCM" 2024-09-27 PDBE A1H3N "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H3N _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #