data_A1H3O # _chem_comp.id A1H3O _chem_comp.name "(2~{R},4~{S})-4-(2-methanimidamidoethylsulfanyl)-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms d1_2S_imipenem _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-05 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RWR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3O C2 C1 C 0 1 N N S N N N 14.659 9.472 21.997 3.519 0.883 -0.103 C2 A1H3O 1 A1H3O C3 C2 C 0 1 N N R N N N 16.059 10.084 21.941 2.006 0.891 0.121 C3 A1H3O 2 A1H3O C4 C3 C 0 1 N N N N N N 16.981 8.868 21.890 1.272 1.293 -1.180 C4 A1H3O 3 A1H3O C5 C4 C 0 1 N N N N N N 17.121 10.252 19.969 0.470 -0.764 -0.215 C5 A1H3O 4 A1H3O C6 C5 C 0 1 N N S N N N 17.685 8.988 20.539 0.027 0.376 -1.106 C6 A1H3O 5 A1H3O C7 C6 C 0 1 N N N N N N 20.218 8.549 19.412 -2.733 0.071 -0.513 C7 A1H3O 6 A1H3O C8 C7 C 0 1 N N N N N N 20.882 7.211 19.678 -4.007 0.676 0.080 C8 A1H3O 7 A1H3O C9 C8 C 0 1 N N N N N N 19.735 6.328 21.726 -6.354 0.040 0.422 C9 A1H3O 8 A1H3O O2 O1 O 0 1 N N N N N N 17.575 12.084 18.585 -1.240 -2.266 -0.754 O2 A1H3O 9 A1H3O N2 N1 N 0 1 N N N N N N 18.659 6.134 21.036 -6.561 1.193 0.970 N2 A1H3O 10 A1H3O O3 O2 O 0 1 N N N N N N 13.627 10.308 19.852 4.416 0.265 -2.192 O3 A1H3O 11 A1H3O C1 C9 C 0 1 N N R N N N 13.584 9.375 23.057 4.225 0.484 1.194 C1 A1H3O 12 A1H3O N N2 N 0 1 N N N N N N 16.248 10.849 20.690 1.529 -0.463 0.426 N A1H3O 13 A1H3O C C10 C 0 1 N N N N N N 12.358 8.675 22.506 3.878 1.490 2.294 C A1H3O 14 A1H3O O O3 O 0 1 N N N N N N 14.177 8.559 24.071 3.795 -0.821 1.589 O A1H3O 15 A1H3O O1 O4 O 0 1 N N N N N N 17.835 10.051 17.699 0.239 -3.018 0.718 O1 A1H3O 16 A1H3O C10 C11 C 0 1 N N N N N N 17.525 10.871 18.684 -0.235 -2.063 -0.104 C10 A1H3O 17 A1H3O C11 C12 C 0 1 N N N N N N 14.009 10.473 21.011 3.861 -0.108 -1.186 C11 A1H3O 18 A1H3O N1 N3 N 0 1 N N N N N N 20.816 6.850 21.091 -5.107 -0.284 -0.044 N1 A1H3O 19 A1H3O S S1 S 0 1 N N N N N N 19.455 9.298 20.872 -1.371 1.259 -0.360 S A1H3O 20 A1H3O H3 H1 H 0 1 N N N N N N 14.707 8.500 21.485 3.847 1.878 -0.404 H3 A1H3O 21 A1H3O H1 H2 H 0 1 N N N N N N 16.260 10.698 22.832 1.747 1.576 0.929 H1 A1H3O 22 A1H3O H8 H3 H 0 1 N N N N N N 17.710 8.896 22.714 0.988 2.345 -1.162 H8 A1H3O 23 A1H3O H9 H4 H 0 1 N N N N N N 16.400 7.935 21.946 1.876 1.065 -2.058 H9 A1H3O 24 A1H3O H2 H5 H 0 1 N N N N N N 17.573 8.104 19.894 -0.237 0.007 -2.097 H2 A1H3O 25 A1H3O H11 H6 H 0 1 N N N N N N 19.437 8.402 18.651 -2.480 -0.843 0.024 H11 A1H3O 26 A1H3O H10 H7 H 0 1 N N N N N N 20.980 9.242 19.026 -2.897 -0.161 -1.566 H10 A1H3O 27 A1H3O H12 H8 H 0 1 N N N N N N 20.372 6.436 19.087 -3.843 0.907 1.132 H12 A1H3O 28 A1H3O H13 H9 H 0 1 N N N N N N 21.937 7.269 19.373 -4.260 1.590 -0.458 H13 A1H3O 29 A1H3O H15 H10 H 0 1 N N N N N N 19.773 6.082 22.777 -7.165 -0.668 0.331 H15 A1H3O 30 A1H3O H16 H11 H 0 1 N N N N N N 17.922 5.748 21.591 -7.444 1.422 1.300 H16 A1H3O 31 A1H3O H H12 H 0 1 N N N N N N 13.322 10.374 23.436 5.303 0.478 1.035 H A1H3O 32 A1H3O H5 H13 H 0 1 N N N N N N 11.898 9.299 21.725 4.381 1.205 3.218 H5 A1H3O 33 A1H3O H4 H14 H 0 1 N N N N N N 12.652 7.706 22.075 4.206 2.484 1.993 H4 A1H3O 34 A1H3O H6 H15 H 0 1 N N N N N N 11.634 8.511 23.318 2.800 1.495 2.454 H6 A1H3O 35 A1H3O H7 H16 H 0 1 N N N N N N 14.946 8.995 24.419 4.203 -1.139 2.406 H7 A1H3O 36 A1H3O H17 H17 H 0 1 N N N N N N 18.092 10.555 16.936 -0.255 -3.849 0.757 H17 A1H3O 37 A1H3O H18 H18 H 0 1 N N N N N N 13.869 11.471 21.400 3.610 -1.151 -1.063 H18 A1H3O 38 A1H3O H14 H19 H 0 1 N N N N N N 21.639 7.000 21.639 -4.952 -1.148 -0.455 H14 A1H3O 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3O C C1 SING N N 1 A1H3O O C1 SING N N 2 A1H3O C1 C2 SING N N 3 A1H3O C3 C2 SING N N 4 A1H3O C3 C4 SING N N 5 A1H3O N C3 SING N N 6 A1H3O C5 N DOUB N N 7 A1H3O C6 C5 SING N N 8 A1H3O C4 C6 SING N N 9 A1H3O S C6 SING N N 10 A1H3O C7 S SING N N 11 A1H3O C8 C7 SING N N 12 A1H3O N1 C8 SING N N 13 A1H3O C9 N1 SING N N 14 A1H3O N2 C9 DOUB N N 15 A1H3O C10 C5 SING N N 16 A1H3O O1 C10 SING N N 17 A1H3O O2 C10 DOUB N N 18 A1H3O C2 C11 SING N N 19 A1H3O C11 O3 DOUB N N 20 A1H3O C2 H3 SING N N 21 A1H3O C3 H1 SING N N 22 A1H3O C4 H8 SING N N 23 A1H3O C4 H9 SING N N 24 A1H3O C6 H2 SING N N 25 A1H3O C7 H11 SING N N 26 A1H3O C7 H10 SING N N 27 A1H3O C8 H12 SING N N 28 A1H3O C8 H13 SING N N 29 A1H3O C9 H15 SING N N 30 A1H3O N2 H16 SING N N 31 A1H3O C1 H SING N N 32 A1H3O C H5 SING N N 33 A1H3O C H4 SING N N 34 A1H3O C H6 SING N N 35 A1H3O O H7 SING N N 36 A1H3O O1 H17 SING N N 37 A1H3O C11 H18 SING N N 38 A1H3O N1 H14 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3O InChI InChI 1.06 "InChI=1S/C12H19N3O4S/c1-7(17)8(5-16)9-4-10(11(15-9)12(18)19)20-3-2-14-6-13/h5-10,17H,2-4H2,1H3,(H2,13,14)(H,18,19)/t7-,8-,9-,10+/m1/s1" A1H3O InChIKey InChI 1.06 NIJGFQHESQFJAG-KYXWUPHJSA-N A1H3O SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@H]1C[C@H](SCCNC=N)C(=N1)C(O)=O" A1H3O SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1C[CH](SCCNC=N)C(=N1)C(O)=O" A1H3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/NCCS[C@H]1C[C@@H](N=C1C(=O)O)[C@H](C=O)[C@@H](C)O" A1H3O SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C=O)C1CC(C(=N1)C(=O)O)SCCNC=N)O" # _pdbx_chem_comp_identifier.comp_id A1H3O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-4-(2-methanimidamidoethylsulfanyl)-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H3O _pdbx_chem_comp_synonyms.name d1_2S_imipenem _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3O "Create component" 2024-02-05 PDBE A1H3O "Modify PCM" 2024-09-27 PDBE A1H3O "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H3O _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #