data_A1H3R # _chem_comp.id A1H3R _chem_comp.name "(3~{S})-4-[4-(1-benzothiophen-3-yl)-6,7,8,9-tetrahydro-5~{H}-pyrimido[4,5-d]azepin-2-yl]-3-methyl-morpholine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms " Respiri-1093" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-06 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3R C1 C1 C 0 1 N N N N N N 61.221 -16.532 -11.565 3.615 0.050 2.118 C1 A1H3R 1 A1H3R C2 C2 C 0 1 N N S N N N 61.374 -16.512 -10.053 3.916 -0.620 0.776 C2 A1H3R 2 A1H3R C3 C3 C 0 1 N N N N N N 60.199 -15.869 -9.355 4.957 -1.725 0.979 C3 A1H3R 3 A1H3R C5 C4 C 0 1 N N N N N N 59.231 -17.930 -8.806 3.999 -2.983 -0.821 C5 A1H3R 4 A1H3R C6 C5 C 0 1 N N N N N N 60.330 -18.711 -9.480 2.949 -1.891 -1.041 C6 A1H3R 5 A1H3R C8 C6 C 0 1 Y N N N N N 62.746 -18.322 -9.000 1.698 -0.248 0.086 C8 A1H3R 6 A1H3R C10 C7 C 0 1 Y N N N N N 63.882 -19.597 -7.498 1.124 1.925 -0.458 C10 A1H3R 7 A1H3R C11 C8 C 0 1 Y N N N N N 65.100 -19.025 -7.889 -0.193 1.643 -0.183 C11 A1H3R 8 A1H3R C12 C9 C 0 1 N N N N N N 66.407 -19.445 -7.257 -1.289 2.672 -0.261 C12 A1H3R 9 A1H3R C13 C10 C 0 1 N N N N N N 66.748 -20.918 -7.418 -0.967 3.746 -1.300 C13 A1H3R 10 A1H3R C15 C11 C 0 1 N N N N N N 64.541 -21.911 -6.633 1.005 4.385 -0.041 C15 A1H3R 11 A1H3R C16 C12 C 0 1 N N N N N N 63.803 -20.606 -6.382 1.569 3.279 -0.939 C16 A1H3R 12 A1H3R C17 C13 C 0 1 Y N N N N N 65.014 -18.036 -8.909 -0.528 0.337 0.209 C17 A1H3R 13 A1H3R C18 C14 C 0 1 Y N N N N N 66.149 -17.242 -9.368 -1.935 -0.025 0.482 C18 A1H3R 14 A1H3R C19 C15 C 0 1 Y N N N N N 67.399 -17.729 -9.605 -2.721 0.690 1.289 C19 A1H3R 15 A1H3R C21 C16 C 0 1 Y N N N N N 67.330 -15.326 -10.166 -3.909 -1.319 0.299 C21 A1H3R 16 A1H3R C22 C17 C 0 1 Y N N N N N 67.493 -14.000 -10.557 -4.682 -2.385 -0.172 C22 A1H3R 17 A1H3R C23 C18 C 0 1 Y N N N N N 66.411 -13.139 -10.486 -4.139 -3.305 -1.038 C23 A1H3R 18 A1H3R C24 C19 C 0 1 Y N N N N N 65.185 -13.591 -10.031 -2.819 -3.180 -1.449 C24 A1H3R 19 A1H3R C25 C20 C 0 1 Y N N N N N 65.022 -14.910 -9.640 -2.050 -2.148 -1.002 C25 A1H3R 20 A1H3R C26 C21 C 0 1 Y N N N N N 66.092 -15.804 -9.700 -2.582 -1.192 -0.114 C26 A1H3R 21 A1H3R N14 N1 N 0 1 N N N N N N 66.020 -21.813 -6.474 -0.256 4.841 -0.629 N14 A1H3R 22 A1H3R N27 N2 N 0 1 Y N N N N N 63.841 -17.703 -9.471 0.438 -0.572 0.331 N27 A1H3R 23 A1H3R N7 N3 N 0 1 N N N N N N 61.527 -17.871 -9.504 2.683 -1.209 0.233 N7 A1H3R 24 A1H3R N9 N4 N 0 1 Y N N N N N 62.707 -19.267 -8.050 2.037 0.971 -0.302 N9 A1H3R 25 A1H3R O4 O1 O 0 1 N N N N N N 59.018 -16.672 -9.439 5.179 -2.397 -0.264 O4 A1H3R 26 A1H3R S20 S1 S 0 1 Y N N N N N 68.528 -16.580 -10.203 -4.325 -0.009 1.396 S20 A1H3R 27 A1H3R H1 H1 H 0 1 N N N N N N 61.110 -15.503 -11.936 3.139 -0.669 2.785 H1 A1H3R 28 A1H3R H2 H2 H 0 1 N N N N N N 62.113 -16.991 -12.018 4.545 0.401 2.566 H2 A1H3R 29 A1H3R H3 H3 H 0 1 N N N N N N 60.330 -17.118 -11.836 2.946 0.896 1.959 H3 A1H3R 30 A1H3R H4 H4 H 0 1 N N N N N N 62.276 -15.932 -9.810 4.303 0.122 0.077 H4 A1H3R 31 A1H3R H5 H5 H 0 1 N N N N N N 60.453 -15.722 -8.295 5.891 -1.285 1.327 H5 A1H3R 32 A1H3R H6 H6 H 0 1 N N N N N N 59.999 -14.894 -9.823 4.592 -2.437 1.718 H6 A1H3R 33 A1H3R H7 H7 H 0 1 N N N N N N 58.300 -18.514 -8.850 3.606 -3.733 -0.134 H7 A1H3R 34 A1H3R H8 H8 H 0 1 N N N N N N 59.508 -17.759 -7.755 4.240 -3.454 -1.774 H8 A1H3R 35 A1H3R H9 H9 H 0 1 N N N N N N 60.031 -18.966 -10.508 3.321 -1.170 -1.769 H9 A1H3R 36 A1H3R H10 H10 H 0 1 N N N N N N 60.532 -19.634 -8.917 2.028 -2.341 -1.413 H10 A1H3R 37 A1H3R H11 H11 H 0 1 N N N N N N 67.214 -18.855 -7.715 -2.223 2.179 -0.533 H11 A1H3R 38 A1H3R H12 H12 H 0 1 N N N N N N 66.355 -19.221 -6.181 -1.406 3.144 0.715 H12 A1H3R 39 A1H3R H13 H13 H 0 1 N N N N N N 66.498 -21.221 -8.445 -0.336 3.322 -2.082 H13 A1H3R 40 A1H3R H14 H14 H 0 1 N N N N N N 67.828 -21.044 -7.251 -1.891 4.122 -1.738 H14 A1H3R 41 A1H3R H15 H15 H 0 1 N N N N N N 64.325 -22.238 -7.661 0.824 3.991 0.959 H15 A1H3R 42 A1H3R H16 H16 H 0 1 N N N N N N 64.166 -22.662 -5.922 1.710 5.214 0.010 H16 A1H3R 43 A1H3R H17 H17 H 0 1 N N N N N N 64.225 -20.145 -5.477 2.658 3.325 -0.925 H17 A1H3R 44 A1H3R H18 H18 H 0 1 N N N N N N 62.742 -20.843 -6.212 1.217 3.431 -1.960 H18 A1H3R 45 A1H3R H19 H19 H 0 1 N N N N N N 67.661 -18.762 -9.430 -2.410 1.583 1.809 H19 A1H3R 46 A1H3R H20 H20 H 0 1 N N N N N N 68.451 -13.648 -10.911 -5.710 -2.486 0.145 H20 A1H3R 47 A1H3R H21 H21 H 0 1 N N N N N N 66.525 -12.108 -10.788 -4.740 -4.127 -1.398 H21 A1H3R 48 A1H3R H22 H22 H 0 1 N N N N N N 64.348 -12.910 -9.980 -2.398 -3.907 -2.128 H22 A1H3R 49 A1H3R H23 H23 H 0 1 N N N N N N 64.060 -15.249 -9.286 -1.025 -2.063 -1.330 H23 A1H3R 50 A1H3R H24 H24 H 0 1 N N N N N N 66.396 -22.733 -6.581 -0.102 5.613 -1.261 H24 A1H3R 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3R C1 C2 SING N N 1 A1H3R C22 C23 DOUB Y N 2 A1H3R C22 C21 SING Y N 3 A1H3R C23 C24 SING Y N 4 A1H3R S20 C21 SING Y N 5 A1H3R S20 C19 SING Y N 6 A1H3R C21 C26 DOUB Y N 7 A1H3R C2 N7 SING N N 8 A1H3R C2 C3 SING N N 9 A1H3R C24 C25 DOUB Y N 10 A1H3R C26 C25 SING Y N 11 A1H3R C26 C18 SING Y N 12 A1H3R C19 C18 DOUB Y N 13 A1H3R N7 C6 SING N N 14 A1H3R N7 C8 SING N N 15 A1H3R C6 C5 SING N N 16 A1H3R N27 C8 DOUB Y N 17 A1H3R N27 C17 SING Y N 18 A1H3R O4 C3 SING N N 19 A1H3R O4 C5 SING N N 20 A1H3R C18 C17 SING N N 21 A1H3R C8 N9 SING Y N 22 A1H3R C17 C11 DOUB Y N 23 A1H3R N9 C10 DOUB Y N 24 A1H3R C11 C10 SING Y N 25 A1H3R C11 C12 SING N N 26 A1H3R C10 C16 SING N N 27 A1H3R C13 C12 SING N N 28 A1H3R C13 N14 SING N N 29 A1H3R C15 N14 SING N N 30 A1H3R C15 C16 SING N N 31 A1H3R C1 H1 SING N N 32 A1H3R C1 H2 SING N N 33 A1H3R C1 H3 SING N N 34 A1H3R C2 H4 SING N N 35 A1H3R C3 H5 SING N N 36 A1H3R C3 H6 SING N N 37 A1H3R C5 H7 SING N N 38 A1H3R C5 H8 SING N N 39 A1H3R C6 H9 SING N N 40 A1H3R C6 H10 SING N N 41 A1H3R C12 H11 SING N N 42 A1H3R C12 H12 SING N N 43 A1H3R C13 H13 SING N N 44 A1H3R C13 H14 SING N N 45 A1H3R C15 H15 SING N N 46 A1H3R C15 H16 SING N N 47 A1H3R C16 H17 SING N N 48 A1H3R C16 H18 SING N N 49 A1H3R C19 H19 SING N N 50 A1H3R C22 H20 SING N N 51 A1H3R C23 H21 SING N N 52 A1H3R C24 H22 SING N N 53 A1H3R C25 H23 SING N N 54 A1H3R N14 H24 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3R InChI InChI 1.06 "InChI=1S/C21H24N4OS/c1-14-12-26-11-10-25(14)21-23-18-7-9-22-8-6-16(18)20(24-21)17-13-27-19-5-3-2-4-15(17)19/h2-5,13-14,22H,6-12H2,1H3/t14-/m0/s1" A1H3R InChIKey InChI 1.06 JTACVXYKEBRWKG-AWEZNQCLSA-N A1H3R SMILES_CANONICAL CACTVS 3.385 "C[C@H]1COCCN1c2nc3CCNCCc3c(n2)c4csc5ccccc45" A1H3R SMILES CACTVS 3.385 "C[CH]1COCCN1c2nc3CCNCCc3c(n2)c4csc5ccccc45" A1H3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1COCCN1c2nc3c(c(n2)c4csc5c4cccc5)CCNCC3" A1H3R SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2nc3c(c(n2)c4csc5c4cccc5)CCNCC3" # _pdbx_chem_comp_identifier.comp_id A1H3R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-4-[4-(1-benzothiophen-3-yl)-6,7,8,9-tetrahydro-5~{H}-pyrimido[4,5-d]azepin-2-yl]-3-methyl-morpholine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3R "Create component" 2024-02-06 PDBE A1H3R "Initial release" 2025-08-20 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H3R _pdbx_chem_comp_synonyms.name " Respiri-1093" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #