data_A1H3V
#
_chem_comp.id A1H3V
_chem_comp.name "(3~{a}~{R},4~{R},5~{R},6~{R},7~{a}~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3~{a},4,5,6,7,7~{a}-hexahydro-3~{H}-1,3-benzoxazol-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H13 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "alpha-1,2-cyclophellitol analogue"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-02-07
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 203.193
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H3V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RVK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H3V C2 C1 C 0 1 N N R N N N 64.538 -6.551 -0.754 1.114 0.580 -0.849 C2 A1H3V 1
A1H3V C4 C2 C 0 1 N N N N N N 62.670 -4.968 -1.752 -0.774 -1.173 -0.941 C4 A1H3V 2
A1H3V C5 C3 C 0 1 N N R N N N 63.160 -3.746 -0.933 -1.499 -0.370 0.133 C5 A1H3V 3
A1H3V C6 C4 C 0 1 N N N N N N 62.877 -2.404 -1.667 -3.000 -0.659 0.068 C6 A1H3V 4
A1H3V C7 C5 C 0 1 N N R N N N 64.650 -3.926 -0.580 -1.247 1.118 -0.127 C7 A1H3V 5
A1H3V C8 C6 C 0 1 N N R N N N 65.078 -5.297 0.018 0.236 1.401 0.076 C8 A1H3V 6
A1H3V N1 N1 N 0 1 N N N N N N 64.255 -7.696 0.271 2.448 0.444 -0.209 N1 A1H3V 7
A1H3V O1 O1 O 0 1 N N N N N N 62.403 -8.454 1.395 3.400 -1.128 1.097 O1 A1H3V 8
A1H3V C1 C7 C 0 1 N N N N N N 62.960 -7.777 0.568 2.499 -0.773 0.363 C1 A1H3V 9
A1H3V C3 C8 C 0 1 N N S N N N 63.119 -6.355 -1.314 0.697 -0.875 -0.999 C3 A1H3V 10
A1H3V O2 O2 O 0 1 N N N N N N 63.750 -2.237 -2.809 -3.236 -2.029 0.398 O2 A1H3V 11
A1H3V O3 O3 O 0 1 N N N N N N 64.967 -2.793 0.247 -2.014 1.903 0.788 O3 A1H3V 12
A1H3V O4 O4 O 0 1 N N N N N N 66.484 -5.333 0.343 0.479 2.788 -0.165 O4 A1H3V 13
A1H3V O5 O5 O 0 1 N N N N N N 62.245 -6.998 -0.305 1.454 -1.557 0.043 O5 A1H3V 14
A1H3V H1 H1 H 0 1 N N N N N N 65.243 -6.875 -1.534 1.203 1.067 -1.820 H1 A1H3V 15
A1H3V H2 H2 H 0 1 N N N N N N 63.014 -4.826 -2.787 -0.909 -2.235 -0.738 H2 A1H3V 16
A1H3V H3 H3 H 0 1 N N N N N N 61.570 -4.958 -1.726 -1.217 -0.943 -1.910 H3 A1H3V 17
A1H3V H4 H4 H 0 1 N N N N N N 62.594 -3.732 0.010 -1.114 -0.642 1.117 H4 A1H3V 18
A1H3V H5 H5 H 0 1 N N N N N N 63.039 -1.571 -0.967 -3.524 -0.018 0.777 H5 A1H3V 19
A1H3V H6 H6 H 0 1 N N N N N N 61.832 -2.396 -2.010 -3.364 -0.460 -0.940 H6 A1H3V 20
A1H3V H7 H7 H 0 1 N N N N N N 65.207 -3.815 -1.522 -1.529 1.364 -1.151 H7 A1H3V 21
A1H3V H8 H8 H 0 1 N N N N N N 64.558 -5.339 0.987 0.500 1.173 1.109 H8 A1H3V 22
A1H3V H9 H9 H 0 1 N N N N N N 64.959 -8.293 0.656 3.154 1.110 -0.206 H9 A1H3V 23
A1H3V H10 H10 H 0 1 N N N N N N 63.066 -6.985 -2.214 1.077 -1.236 -1.955 H10 A1H3V 24
A1H3V H11 H11 H 0 1 N N N N N N 63.557 -1.412 -3.238 -4.169 -2.283 0.377 H11 A1H3V 25
A1H3V H12 H12 H 0 1 N N N N N N 65.880 -2.835 0.507 -1.902 2.857 0.678 H12 A1H3V 26
A1H3V H13 H13 H 0 1 N N N N N N 66.723 -4.539 0.807 -0.046 3.382 0.389 H13 A1H3V 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H3V O2 C6 SING N N 1
A1H3V C4 C3 SING N N 2
A1H3V C4 C5 SING N N 3
A1H3V C6 C5 SING N N 4
A1H3V C3 C2 SING N N 5
A1H3V C3 O5 SING N N 6
A1H3V C5 C7 SING N N 7
A1H3V C2 C8 SING N N 8
A1H3V C2 N1 SING N N 9
A1H3V C7 C8 SING N N 10
A1H3V C7 O3 SING N N 11
A1H3V O5 C1 SING N N 12
A1H3V C8 O4 SING N N 13
A1H3V N1 C1 SING N N 14
A1H3V C1 O1 DOUB N N 15
A1H3V C2 H1 SING N N 16
A1H3V C4 H2 SING N N 17
A1H3V C4 H3 SING N N 18
A1H3V C5 H4 SING N N 19
A1H3V C6 H5 SING N N 20
A1H3V C6 H6 SING N N 21
A1H3V C7 H7 SING N N 22
A1H3V C8 H8 SING N N 23
A1H3V N1 H9 SING N N 24
A1H3V C3 H10 SING N N 25
A1H3V O2 H11 SING N N 26
A1H3V O3 H12 SING N N 27
A1H3V O4 H13 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H3V InChI InChI 1.06 "InChI=1S/C8H13NO5/c10-2-3-1-4-5(7(12)6(3)11)9-8(13)14-4/h3-7,10-12H,1-2H2,(H,9,13)/t3-,4+,5+,6-,7-/m1/s1"
A1H3V InChIKey InChI 1.06 MSEYXKZOSYTDQB-VOQCIKJUSA-N
A1H3V SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1C[C@@H]2OC(=O)N[C@@H]2[C@@H](O)[C@@H]1O"
A1H3V SMILES CACTVS 3.385 "OC[CH]1C[CH]2OC(=O)N[CH]2[CH](O)[CH]1O"
A1H3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H]([C@@H]([C@@H]2[C@H]1OC(=O)N2)O)O)CO"
A1H3V SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C2C1OC(=O)N2)O)O)CO"
#
_pdbx_chem_comp_identifier.comp_id A1H3V
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{a}~{R},4~{R},5~{R},6~{R},7~{a}~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3~{a},4,5,6,7,7~{a}-hexahydro-3~{H}-1,3-benzoxazol-2-one"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id A1H3V
_pdbx_chem_comp_synonyms.name "alpha-1,2-cyclophellitol analogue"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H3V "Create component" 2024-02-07 PDBE
A1H3V "Initial release" 2024-05-15 RCSB
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