data_A1H46 # _chem_comp.id A1H46 _chem_comp.name "~{N}-[(1~{S},3~{R})-3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]-1-methyl-cyclohexyl]-5-[4-(dimethylamino)butanoylamino]pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H37 Cl N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-22 _chem_comp.pdbx_modified_date 2024-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 589.131 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H46 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S0R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H46 C10 C1 C 0 1 N N N N N N 168.891 143.881 118.781 10.946 0.888 0.093 C10 A1H46 1 A1H46 N12 N1 N 0 1 N N N N N N 167.249 144.390 116.777 13.338 0.990 0.608 N12 A1H46 2 A1H46 C13 C2 C 0 1 N N N N N N 167.988 145.630 116.233 13.140 0.727 2.040 C13 A1H46 3 A1H46 C17 C3 C 0 1 Y N N N N N 164.299 141.425 123.246 5.040 -1.516 -0.784 C17 A1H46 4 A1H46 C20 C4 C 0 1 N N N N N N 160.921 138.982 125.469 -0.104 -2.399 -1.322 C20 A1H46 5 A1H46 C21 C5 C 0 1 N N N N N N 159.884 141.253 125.792 0.280 -2.599 1.139 C21 A1H46 6 A1H46 C22 C6 C 0 1 N N N N N N 158.609 140.788 126.540 -1.036 -3.365 1.282 C22 A1H46 7 A1H46 C24 C7 C 0 1 N N R N N N 158.028 139.354 124.547 -2.279 -1.400 0.367 C24 A1H46 8 A1H46 C26 C8 C 0 1 Y N N N N N 155.933 138.131 124.084 -4.669 -0.791 0.275 C26 A1H46 9 A1H46 C28 C9 C 0 1 Y N N N N N 153.797 137.323 123.883 -6.136 -2.340 -0.601 C28 A1H46 10 A1H46 C02 C10 C 0 1 N N N N N N 162.131 140.188 122.958 2.585 -1.557 -0.404 C02 A1H46 11 A1H46 C03 C11 C 0 1 Y N N N N N 163.316 140.894 122.403 3.858 -0.817 -0.543 C03 A1H46 12 A1H46 C05 C12 C 0 1 Y N N N N N 164.585 141.355 120.512 4.969 1.205 -0.550 C05 A1H46 13 A1H46 C06 C13 C 0 1 Y N N N N N 165.633 141.851 121.283 6.189 0.574 -0.787 C06 A1H46 14 A1H46 C08 C14 C 0 1 N N N N N N 167.879 142.866 121.004 8.526 0.830 -0.446 C08 A1H46 15 A1H46 C09 C15 C 0 1 N N N N N N 169.042 142.914 119.997 9.771 1.678 -0.487 C09 A1H46 16 A1H46 C11 C16 C 0 1 N N N N N N 167.427 144.066 118.274 12.210 1.749 0.052 C11 A1H46 17 A1H46 C14 C17 C 0 1 N N N N N N 165.747 144.476 116.452 14.609 1.687 0.371 C14 A1H46 18 A1H46 C16 C18 C 0 1 Y N N N N N 165.473 141.914 122.676 6.225 -0.814 -0.905 C16 A1H46 19 A1H46 C19 C19 C 0 1 N N S N N N 160.394 140.243 124.749 0.177 -1.622 -0.034 C19 A1H46 20 A1H46 C23 C20 C 0 1 N N N N N N 157.507 140.390 125.553 -2.176 -2.377 1.540 C23 A1H46 21 A1H46 C29 C21 C 0 1 Y N N N N N 153.846 136.818 125.178 -7.185 -1.466 -0.379 C29 A1H46 22 A1H46 C31 C22 C 0 1 Y N N N N N 155.012 137.068 125.903 -6.902 -0.218 0.191 C31 A1H46 23 A1H46 C32 C23 C 0 1 Y N N N N N 155.296 136.832 127.340 -7.988 0.752 0.449 C32 A1H46 24 A1H46 C33 C24 C 0 1 Y N N N N N 154.383 136.800 128.361 -9.159 0.507 1.091 C33 A1H46 25 A1H46 C35 C25 C 0 1 Y N N N N N 156.371 136.536 129.353 -9.235 2.681 0.523 C35 A1H46 26 A1H46 C36 C26 C 0 1 Y N N N N N 156.588 136.668 127.962 -8.006 2.174 0.068 C36 A1H46 27 A1H46 C37 C27 C 0 1 Y N N N N N 157.913 136.595 127.489 -7.110 3.010 -0.596 C37 A1H46 28 A1H46 C38 C28 C 0 1 Y N N N N N 158.956 136.451 128.393 -7.435 4.332 -0.803 C38 A1H46 29 A1H46 C39 C29 C 0 1 Y N N N N N 158.706 136.363 129.753 -8.648 4.834 -0.353 C39 A1H46 30 A1H46 C40 C30 C 0 1 Y N N N N N 157.412 136.364 130.258 -9.544 4.020 0.306 C40 A1H46 31 A1H46 C42 C31 C 0 1 N N N N N N 159.186 139.989 123.806 -0.962 -0.634 0.224 C42 A1H46 32 A1H46 N04 N2 N 0 1 Y N N N N N 163.443 140.885 121.047 3.863 0.507 -0.435 N04 A1H46 33 A1H46 N07 N3 N 0 1 N N N N N N 166.813 142.159 120.606 7.360 1.322 -0.908 N07 A1H46 34 A1H46 N18 N4 N 0 1 N N N N N N 161.530 140.766 124.007 1.438 -0.888 -0.171 N18 A1H46 35 A1H46 N25 N5 N 0 1 N N N N N N 156.985 138.917 123.620 -3.370 -0.454 0.614 N25 A1H46 36 A1H46 N27 N6 N 0 1 Y N N N N N 154.833 137.987 123.320 -4.907 -1.976 -0.267 N27 A1H46 37 A1H46 N34 N7 N 0 1 Y N N N N N 155.024 136.643 129.553 -9.906 1.645 1.137 N34 A1H46 38 A1H46 N41 N8 N 0 1 Y N N N N N 156.051 137.657 125.321 -5.641 0.077 0.506 N41 A1H46 39 A1H46 O01 O1 O 0 1 N N N N N N 161.778 139.118 122.477 2.573 -2.769 -0.501 O01 A1H46 40 A1H46 O15 O2 O 0 1 N N N N N N 167.956 143.466 122.068 8.574 -0.296 0.002 O15 A1H46 41 A1H46 CL30 CL1 CL 0 0 N N N N N N 152.501 136.000 125.851 -8.811 -1.905 -0.796 CL30 A1H46 42 A1H46 H1 H1 H 0 1 N N N N N N 169.494 143.484 117.951 10.726 0.614 1.125 H1 A1H46 43 A1H46 HC10 H2 H 0 0 N N N N N N 169.278 144.867 119.077 11.102 -0.015 -0.497 HC10 A1H46 44 A1H46 H132 H4 H 0 0 N N N N N N 169.059 145.554 116.473 12.227 0.149 2.180 H132 A1H46 45 A1H46 H131 H5 H 0 0 N N N N N N 167.860 145.684 115.142 13.990 0.164 2.426 H131 A1H46 46 A1H46 H133 H6 H 0 0 N N N N N N 167.572 146.537 116.696 13.058 1.673 2.575 H133 A1H46 47 A1H46 HC17 H7 H 0 0 N N N N N N 164.151 141.455 124.315 5.030 -2.593 -0.870 HC17 A1H46 48 A1H46 H201 H8 H 0 0 N N N N N N 161.771 139.254 126.112 -1.042 -2.944 -1.220 H201 A1H46 49 A1H46 H203 H9 H 0 0 N N N N N N 160.119 138.550 126.086 -0.177 -1.703 -2.157 H203 A1H46 50 A1H46 H202 H10 H 0 0 N N N N N N 161.248 138.243 124.722 0.708 -3.103 -1.506 H202 A1H46 51 A1H46 H211 H11 H 0 0 N N N N N N 160.680 141.419 126.533 0.480 -2.046 2.056 H211 A1H46 52 A1H46 H212 H12 H 0 0 N N N N N N 159.659 142.199 125.278 1.092 -3.303 0.955 H212 A1H46 53 A1H46 H222 H13 H 0 0 N N N N N N 158.244 141.610 127.174 -1.236 -3.918 0.364 H222 A1H46 54 A1H46 H221 H14 H 0 0 N N N N N N 158.858 139.921 127.170 -0.963 -4.061 2.117 H221 A1H46 55 A1H46 HC24 H15 H 0 0 N N N N N N 158.404 138.485 125.108 -2.479 -1.953 -0.550 HC24 A1H46 56 A1H46 HC28 H16 H 0 0 N N N N N N 152.897 137.180 123.304 -6.319 -3.310 -1.039 HC28 A1H46 57 A1H46 HC05 H17 H 0 0 N N N N N N 164.693 141.347 119.437 4.934 2.280 -0.457 HC05 A1H46 58 A1H46 H092 H18 H 0 0 N N N N N N 169.176 141.898 119.598 9.615 2.581 0.103 H092 A1H46 59 A1H46 H091 H19 H 0 0 N N N N N N 169.945 143.214 120.548 9.991 1.952 -1.519 H091 A1H46 60 A1H46 H112 H20 H 0 0 N N N N N N 166.976 144.888 118.849 12.429 2.023 -0.980 H112 A1H46 61 A1H46 H111 H21 H 0 0 N N N N N N 166.882 143.133 118.480 12.053 2.652 0.641 H111 A1H46 62 A1H46 H143 H22 H 0 0 N N N N N N 165.235 143.586 116.846 14.580 2.668 0.846 H143 A1H46 63 A1H46 H142 H23 H 0 0 N N N N N N 165.323 145.379 116.916 15.427 1.104 0.793 H142 A1H46 64 A1H46 H141 H24 H 0 0 N N N N N N 165.610 144.525 115.362 14.763 1.807 -0.701 H141 A1H46 65 A1H46 HC16 H25 H 0 0 N N N N N N 166.249 142.336 123.298 7.157 -1.330 -1.087 HC16 A1H46 66 A1H46 H232 H26 H 0 0 N N N N N N 157.170 141.284 125.008 -3.114 -2.922 1.642 H232 A1H46 67 A1H46 H231 H27 H 0 0 N N N N N N 156.662 139.959 126.110 -1.976 -1.823 2.458 H231 A1H46 68 A1H46 HC33 H28 H 0 0 N N N N N N 153.313 136.886 128.239 -9.455 -0.447 1.502 HC33 A1H46 69 A1H46 HC37 H29 H 0 0 N N N N N N 158.116 136.651 126.430 -6.165 2.622 -0.947 HC37 A1H46 70 A1H46 HC38 H30 H 0 0 N N N N N N 159.973 136.407 128.033 -6.742 4.982 -1.317 HC38 A1H46 71 A1H46 HC39 H31 H 0 0 N N N N N N 159.538 136.292 130.438 -8.892 5.872 -0.520 HC39 A1H46 72 A1H46 HC40 H32 H 0 0 N N N N N N 157.222 136.236 131.313 -10.484 4.421 0.655 HC40 A1H46 73 A1H46 H422 H33 H 0 0 N N N N N N 159.502 139.318 122.994 -1.036 0.062 -0.611 H422 A1H46 74 A1H46 H421 H34 H 0 0 N N N N N N 158.856 140.949 123.382 -0.762 -0.080 1.142 H421 A1H46 75 A1H46 HN07 H35 H 0 0 N N N N N N 166.873 141.794 119.677 7.334 2.198 -1.325 HN07 A1H46 76 A1H46 HN18 H36 H 0 0 N N N N N N 161.900 141.645 124.310 1.448 0.078 -0.094 HN18 A1H46 77 A1H46 HN25 H37 H 0 0 N N N N N N 157.439 138.396 122.897 -3.182 0.409 1.016 HN25 A1H46 78 A1H46 HN34 H38 H 0 0 N N N N N N 154.574 136.611 130.445 -10.783 1.717 1.546 HN34 A1H46 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H46 C13 N12 SING N N 1 A1H46 C14 N12 SING N N 2 A1H46 N12 C11 SING N N 3 A1H46 C11 C10 SING N N 4 A1H46 C10 C09 SING N N 5 A1H46 C09 C08 SING N N 6 A1H46 C05 N04 DOUB Y N 7 A1H46 C05 C06 SING Y N 8 A1H46 N07 C08 SING N N 9 A1H46 N07 C06 SING N N 10 A1H46 C08 O15 DOUB N N 11 A1H46 N04 C03 SING Y N 12 A1H46 C06 C16 DOUB Y N 13 A1H46 C03 C02 SING N N 14 A1H46 C03 C17 DOUB Y N 15 A1H46 O01 C02 DOUB N N 16 A1H46 C16 C17 SING Y N 17 A1H46 C02 N18 SING N N 18 A1H46 N27 C28 DOUB Y N 19 A1H46 N27 C26 SING Y N 20 A1H46 N25 C26 SING N N 21 A1H46 N25 C24 SING N N 22 A1H46 C42 C24 SING N N 23 A1H46 C42 C19 SING N N 24 A1H46 C28 C29 SING Y N 25 A1H46 N18 C19 SING N N 26 A1H46 C26 N41 DOUB Y N 27 A1H46 C24 C23 SING N N 28 A1H46 C19 C20 SING N N 29 A1H46 C19 C21 SING N N 30 A1H46 C29 CL30 SING N N 31 A1H46 C29 C31 DOUB Y N 32 A1H46 N41 C31 SING Y N 33 A1H46 C23 C22 SING N N 34 A1H46 C21 C22 SING N N 35 A1H46 C31 C32 SING N N 36 A1H46 C32 C36 SING Y N 37 A1H46 C32 C33 DOUB Y N 38 A1H46 C37 C36 DOUB Y N 39 A1H46 C37 C38 SING Y N 40 A1H46 C36 C35 SING Y N 41 A1H46 C33 N34 SING Y N 42 A1H46 C38 C39 DOUB Y N 43 A1H46 C35 N34 SING Y N 44 A1H46 C35 C40 DOUB Y N 45 A1H46 C39 C40 SING Y N 46 A1H46 C10 H1 SING N N 47 A1H46 C10 HC10 SING N N 48 A1H46 C13 H132 SING N N 49 A1H46 C13 H131 SING N N 50 A1H46 C13 H133 SING N N 51 A1H46 C17 HC17 SING N N 52 A1H46 C20 H201 SING N N 53 A1H46 C20 H203 SING N N 54 A1H46 C20 H202 SING N N 55 A1H46 C21 H211 SING N N 56 A1H46 C21 H212 SING N N 57 A1H46 C22 H222 SING N N 58 A1H46 C22 H221 SING N N 59 A1H46 C24 HC24 SING N N 60 A1H46 C28 HC28 SING N N 61 A1H46 C05 HC05 SING N N 62 A1H46 C09 H092 SING N N 63 A1H46 C09 H091 SING N N 64 A1H46 C11 H112 SING N N 65 A1H46 C11 H111 SING N N 66 A1H46 C14 H143 SING N N 67 A1H46 C14 H142 SING N N 68 A1H46 C14 H141 SING N N 69 A1H46 C16 HC16 SING N N 70 A1H46 C23 H232 SING N N 71 A1H46 C23 H231 SING N N 72 A1H46 C33 HC33 SING N N 73 A1H46 C37 HC37 SING N N 74 A1H46 C38 HC38 SING N N 75 A1H46 C39 HC39 SING N N 76 A1H46 C40 HC40 SING N N 77 A1H46 C42 H422 SING N N 78 A1H46 C42 H421 SING N N 79 A1H46 N07 HN07 SING N N 80 A1H46 N18 HN18 SING N N 81 A1H46 N25 HN25 SING N N 82 A1H46 N34 HN34 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H46 InChI InChI 1.06 "InChI=1S/C31H37ClN8O2/c1-31(39-29(42)26-13-12-21(17-33-26)36-27(41)11-7-15-40(2)3)14-6-8-20(16-31)37-30-35-19-24(32)28(38-30)23-18-34-25-10-5-4-9-22(23)25/h4-5,9-10,12-13,17-20,34H,6-8,11,14-16H2,1-3H3,(H,36,41)(H,39,42)(H,35,37,38)/t20-,31+/m1/s1" A1H46 InChIKey InChI 1.06 RKBUTLKOTGZCGA-QJWGWKRISA-N A1H46 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCC(=O)Nc1ccc(nc1)C(=O)N[C@@]2(C)CCC[C@H](C2)Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45" A1H46 SMILES CACTVS 3.385 "CN(C)CCCC(=O)Nc1ccc(nc1)C(=O)N[C]2(C)CCC[CH](C2)Nc3ncc(Cl)c(n3)c4c[nH]c5ccccc45" A1H46 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCC[C@H](C1)Nc2ncc(c(n2)c3c[nH]c4c3cccc4)Cl)NC(=O)c5ccc(cn5)NC(=O)CCCN(C)C" A1H46 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCCC(C1)Nc2ncc(c(n2)c3c[nH]c4c3cccc4)Cl)NC(=O)c5ccc(cn5)NC(=O)CCCN(C)C" # _pdbx_chem_comp_identifier.comp_id A1H46 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S},3~{R})-3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]-1-methyl-cyclohexyl]-5-[4-(dimethylamino)butanoylamino]pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H46 "Create component" 2024-02-22 PDBE A1H46 "Modify PCM" 2024-09-27 PDBE A1H46 "Initial release" 2024-12-25 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H46 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #