data_A1H4A
#
_chem_comp.id A1H4A
_chem_comp.name "8-[4-methyl-3-(trifluoromethyl)phenyl]-2-[[(7S)-7-(2-morpholin-4-ylethylcarbamoyl)-4-(phenylsulfonyl)-1,4-diazepan-1-yl]carbonyl]imidazo[1,2-a]pyridine-6-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H37 F3 N6 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "LIPID FRAGMENT"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-02-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 742.764
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H4A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RZB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H4A C2 C1 C 0 1 N N N N N N 4.822 -17.238 -11.634 0.826 1.331 -0.665 C2 A1H4A 1
A1H4A O1 O1 O 0 1 N N N N N N 4.604 -18.445 -11.768 1.738 1.970 -1.153 O1 A1H4A 2
A1H4A C41 C2 C 0 1 Y N N N N N 7.527 -12.810 -6.988 -4.102 0.165 1.992 C41 A1H4A 3
A1H4A C42 C3 C 0 1 Y N N N N N 7.089 -11.500 -6.818 -4.629 -1.051 2.375 C42 A1H4A 4
A1H4A C43 C4 C 0 1 Y N N N N N 5.793 -11.127 -7.192 -5.600 -1.662 1.602 C43 A1H4A 5
A1H4A C44 C5 C 0 1 N N N N N N 5.419 -9.666 -7.070 -6.172 -2.990 2.027 C44 A1H4A 6
A1H4A C55 C6 C 0 1 N N N N N N 3.521 -11.709 -8.222 -7.111 -1.727 -0.393 C55 A1H4A 7
A1H4A C59 C7 C 0 1 Y N N N N N 5.377 -13.386 -7.908 -5.537 0.163 0.053 C59 A1H4A 8
A1H4A C60 C8 C 0 1 Y N N N N N 6.637 -16.085 -8.716 -2.591 2.220 0.029 C60 A1H4A 9
A1H4A C11 C9 C 0 1 N N N N N N 6.907 -20.541 -19.925 9.236 2.866 1.694 C11 A1H4A 10
A1H4A C13 C10 C 0 1 N N N N N N 5.092 -22.062 -20.216 10.329 2.549 -0.413 C13 A1H4A 11
A1H4A C14 C11 C 0 1 N N N N N N 4.586 -21.794 -18.773 9.314 1.468 -0.791 C14 A1H4A 12
A1H4A C16 C12 C 0 1 N N N N N N 2.480 -15.724 -14.106 2.642 -1.122 -1.842 C16 A1H4A 13
A1H4A C17 C13 C 0 1 N N N N N N 1.580 -15.141 -12.988 1.330 -1.724 -2.442 C17 A1H4A 14
A1H4A C21 C14 C 0 1 Y N N N N N 0.638 -12.038 -11.554 1.884 -3.993 0.273 C21 A1H4A 15
A1H4A C22 C15 C 0 1 Y N N N N N -0.465 -12.851 -11.271 1.382 -3.967 1.560 C22 A1H4A 16
A1H4A C23 C16 C 0 1 Y N N N N N -1.322 -12.516 -10.218 2.246 -3.977 2.639 C23 A1H4A 17
A1H4A C24 C17 C 0 1 Y N N N N N -1.083 -11.402 -9.431 3.612 -4.013 2.430 C24 A1H4A 18
A1H4A C25 C18 C 0 1 Y N N N N N -0.005 -10.580 -9.748 4.114 -4.039 1.143 C25 A1H4A 19
A1H4A C26 C19 C 0 1 Y N N N N N 0.859 -10.902 -10.797 3.250 -4.028 0.064 C26 A1H4A 20
A1H4A C28 C20 C 0 1 N N N N N N 3.459 -14.109 -11.564 -0.610 -1.634 -0.901 C28 A1H4A 21
A1H4A C29 C21 C 0 1 N N N N N N 4.607 -14.857 -12.304 -0.102 -0.799 0.181 C29 A1H4A 22
A1H4A C30 C22 C 0 1 Y N N N N N 5.661 -16.990 -10.453 -0.490 1.965 -0.458 C30 A1H4A 23
A1H4A N3 N1 N 0 1 N N N N N N 4.290 -16.287 -12.469 1.015 0.042 -0.320 N3 A1H4A 24
A1H4A C4 C23 C 0 1 N N S N N N 3.503 -16.779 -13.613 2.293 -0.573 -0.420 C4 A1H4A 25
A1H4A C5 C24 C 0 1 N N N N N N 4.417 -17.352 -14.678 3.340 0.437 -0.029 C5 A1H4A 26
A1H4A N6 N2 N 0 1 N N N N N N 3.957 -18.253 -15.554 4.628 0.241 -0.374 N6 A1H4A 27
A1H4A C7 C25 C 0 1 N N N N N N 4.917 -18.753 -16.523 5.647 1.223 0.007 C7 A1H4A 28
A1H4A C8 C26 C 0 1 N N N N N N 4.589 -20.203 -16.887 7.014 0.764 -0.503 C8 A1H4A 29
A1H4A N9 N3 N 0 1 N N N N N N 5.051 -20.477 -18.272 8.035 1.748 -0.122 N9 A1H4A 30
A1H4A C10 C27 C 0 1 N N N N N N 6.509 -20.287 -18.451 8.209 1.788 1.337 C10 A1H4A 31
A1H4A O12 O2 O 0 1 N N N N N N 6.519 -21.868 -20.323 10.462 2.595 1.010 O12 A1H4A 32
A1H4A O15 O3 O 0 1 N N N N N N 5.585 -16.990 -14.713 3.024 1.427 0.597 O15 A1H4A 33
A1H4A N18 N4 N 0 1 N N N N N N 2.277 -13.951 -12.439 0.507 -2.405 -1.505 N18 A1H4A 34
A1H4A S19 S1 S 0 1 N N N N N N 1.773 -12.387 -12.872 0.782 -3.988 -1.103 S19 A1H4A 35
A1H4A O20 O4 O 0 1 N N N N N N 2.836 -11.416 -12.747 1.496 -4.560 -2.190 O20 A1H4A 36
A1H4A O27 O5 O 0 1 N N N N N N 1.057 -12.456 -14.125 -0.454 -4.502 -0.628 O27 A1H4A 37
A1H4A C31 C28 C 0 1 Y N N N N N 6.472 -17.882 -9.863 -0.784 3.283 -0.652 C31 A1H4A 38
A1H4A N32 N5 N 0 1 Y N N N N N 7.031 -17.319 -8.821 -2.103 3.448 -0.349 N32 A1H4A 39
A1H4A C33 C29 C 0 1 Y N N N N N 7.902 -17.879 -8.015 -2.917 4.539 -0.365 C33 A1H4A 40
A1H4A C34 C30 C 0 1 Y N N N N N 8.440 -17.152 -7.012 -4.240 4.446 -0.008 C34 A1H4A 41
A1H4A C35 C31 C 0 1 N N N N N N 9.421 -17.738 -6.108 -5.091 5.650 -0.038 C35 A1H4A 42
A1H4A O36 O6 O 0 1 N N N N N N 9.853 -16.979 -5.105 -6.389 5.567 0.311 O36 A1H4A 43
A1H4A O37 O7 O 0 1 N N N N N N 9.770 -18.903 -6.258 -4.621 6.718 -0.379 O37 A1H4A 44
A1H4A C38 C32 C 0 1 Y N N N N N 8.021 -15.749 -6.795 -4.794 3.206 0.389 C38 A1H4A 45
A1H4A C39 C33 C 0 1 Y N N N N N 7.134 -15.202 -7.645 -4.000 2.093 0.415 C39 A1H4A 46
A1H4A C40 C34 C 0 1 Y N N N N N 6.662 -13.769 -7.519 -4.553 0.781 0.825 C40 A1H4A 47
A1H4A C54 C35 C 0 1 Y N N N N N 4.936 -12.070 -7.768 -6.049 -1.058 0.441 C54 A1H4A 48
A1H4A F56 F1 F 0 1 N N N N N N 2.861 -12.818 -8.615 -8.264 -1.907 0.379 F56 A1H4A 49
A1H4A F57 F2 F 0 1 N N N N N N 2.800 -11.073 -7.255 -7.411 -0.924 -1.498 F57 A1H4A 50
A1H4A F58 F3 F 0 1 N N N N N N 3.592 -10.905 -9.297 -6.645 -2.970 -0.832 F58 A1H4A 51
A1H4A N61 N6 N 0 1 Y N N N N N 5.831 -15.829 -9.630 -1.612 1.341 -0.046 N61 A1H4A 52
A1H4A H1 H1 H 0 1 N N N N N N 8.534 -13.084 -6.710 -3.343 0.641 2.596 H1 A1H4A 53
A1H4A H2 H2 H 0 1 N N N N N N 7.756 -10.764 -6.393 -4.283 -1.527 3.281 H2 A1H4A 54
A1H4A H3 H3 H 0 1 N N N N N N 4.958 -9.486 -6.088 -7.041 -2.824 2.663 H3 A1H4A 55
A1H4A H4 H4 H 0 1 N N N N N N 6.323 -9.047 -7.170 -6.471 -3.556 1.144 H4 A1H4A 56
A1H4A H5 H5 H 0 1 N N N N N N 4.705 -9.403 -7.864 -5.418 -3.550 2.579 H5 A1H4A 57
A1H4A H6 H6 H 0 1 N N N N N N 4.710 -14.125 -8.327 -5.898 0.640 -0.846 H6 A1H4A 58
A1H4A H7 H7 H 0 1 N N N N N N 7.997 -20.434 -20.031 8.859 3.843 1.391 H7 A1H4A 59
A1H4A H8 H8 H 0 1 N N N N N N 6.402 -19.806 -20.569 9.410 2.861 2.770 H8 A1H4A 60
A1H4A H9 H9 H 0 1 N N N N N N 4.585 -21.372 -20.906 11.295 2.315 -0.862 H9 A1H4A 61
A1H4A H10 H10 H 0 1 N N N N N N 4.851 -23.099 -20.492 9.984 3.517 -0.778 H10 A1H4A 62
A1H4A H11 H11 H 0 1 N N N N N N 3.486 -21.810 -18.771 9.166 1.469 -1.872 H11 A1H4A 63
A1H4A H12 H12 H 0 1 N N N N N N 4.965 -22.584 -18.108 9.684 0.493 -0.475 H12 A1H4A 64
A1H4A H13 H13 H 0 1 N N N N N N 3.035 -14.895 -14.569 3.404 -1.898 -1.763 H13 A1H4A 65
A1H4A H14 H14 H 0 1 N N N N N N 1.832 -16.197 -14.859 3.002 -0.311 -2.475 H14 A1H4A 66
A1H4A H15 H15 H 0 1 N N N N N N 0.605 -14.848 -13.404 0.750 -0.914 -2.885 H15 A1H4A 67
A1H4A H16 H16 H 0 1 N N N N N N 1.431 -15.889 -12.196 1.601 -2.422 -3.234 H16 A1H4A 68
A1H4A H17 H17 H 0 1 N N N N N N -0.654 -13.734 -11.864 0.315 -3.939 1.724 H17 A1H4A 69
A1H4A H18 H18 H 0 1 N N N N N N -2.183 -13.135 -10.016 1.854 -3.956 3.645 H18 A1H4A 70
A1H4A H19 H19 H 0 1 N N N N N N -1.720 -11.175 -8.589 4.287 -4.020 3.273 H19 A1H4A 71
A1H4A H20 H20 H 0 1 N N N N N N 0.166 -9.681 -9.175 5.181 -4.067 0.979 H20 A1H4A 72
A1H4A H21 H21 H 0 1 N N N N N N 1.701 -10.263 -11.017 3.642 -4.048 -0.942 H21 A1H4A 73
A1H4A H22 H22 H 0 1 N N N N N N 3.816 -13.114 -11.259 -1.356 -2.325 -0.507 H22 A1H4A 74
A1H4A H23 H23 H 0 1 N N N N N N 3.171 -14.685 -10.672 -1.068 -1.003 -1.662 H23 A1H4A 75
A1H4A H24 H24 H 0 1 N N N N N N 5.534 -14.760 -11.720 -0.902 -0.157 0.550 H24 A1H4A 76
A1H4A H25 H25 H 0 1 N N N N N N 4.750 -14.404 -13.296 0.258 -1.433 0.991 H25 A1H4A 77
A1H4A H26 H26 H 0 1 N N N N N N 2.904 -17.623 -13.241 2.334 -1.400 0.289 H26 A1H4A 78
A1H4A H27 H27 H 0 1 N N N N N N 3.007 -18.564 -15.542 4.881 -0.551 -0.874 H27 A1H4A 79
A1H4A H28 H28 H 0 1 N N N N N N 5.928 -18.706 -16.092 5.401 2.190 -0.432 H28 A1H4A 80
A1H4A H29 H29 H 0 1 N N N N N N 4.876 -18.132 -17.430 5.676 1.314 1.093 H29 A1H4A 81
A1H4A H30 H30 H 0 1 N N N N N N 3.502 -20.361 -16.824 7.260 -0.203 -0.064 H30 A1H4A 82
A1H4A H31 H31 H 0 1 N N N N N N 5.099 -20.882 -16.188 6.985 0.673 -1.589 H31 A1H4A 83
A1H4A H33 H33 H 0 1 N N N N N N 7.049 -20.993 -17.803 8.562 0.818 1.688 H33 A1H4A 84
A1H4A H34 H34 H 0 1 N N N N N N 6.777 -19.256 -18.175 7.256 2.022 1.811 H34 A1H4A 85
A1H4A H35 H35 H 0 1 N N N N N N 6.637 -18.897 -10.193 -0.100 4.051 -0.982 H35 A1H4A 86
A1H4A H36 H36 H 0 1 N N N N N N 8.186 -18.912 -8.152 -2.514 5.495 -0.665 H36 A1H4A 87
A1H4A H37 H37 H 0 1 N N N N N N 10.447 -17.481 -4.560 -6.907 6.383 0.275 H37 A1H4A 88
A1H4A H38 H38 H 0 1 N N N N N N 8.420 -15.176 -5.971 -5.835 3.140 0.669 H38 A1H4A 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H4A O12 C13 SING N N 1
A1H4A O12 C11 SING N N 2
A1H4A C13 C14 SING N N 3
A1H4A C11 C10 SING N N 4
A1H4A C14 N9 SING N N 5
A1H4A C10 N9 SING N N 6
A1H4A N9 C8 SING N N 7
A1H4A C8 C7 SING N N 8
A1H4A C7 N6 SING N N 9
A1H4A N6 C5 SING N N 10
A1H4A O15 C5 DOUB N N 11
A1H4A C5 C4 SING N N 12
A1H4A O27 S19 DOUB N N 13
A1H4A C16 C4 SING N N 14
A1H4A C16 C17 SING N N 15
A1H4A C4 N3 SING N N 16
A1H4A C17 N18 SING N N 17
A1H4A S19 O20 DOUB N N 18
A1H4A S19 N18 SING N N 19
A1H4A S19 C21 SING N N 20
A1H4A N3 C29 SING N N 21
A1H4A N3 C2 SING N N 22
A1H4A N18 C28 SING N N 23
A1H4A C29 C28 SING N N 24
A1H4A O1 C2 DOUB N N 25
A1H4A C2 C30 SING N N 26
A1H4A C21 C22 DOUB Y N 27
A1H4A C21 C26 SING Y N 28
A1H4A C22 C23 SING Y N 29
A1H4A C26 C25 DOUB Y N 30
A1H4A C30 C31 DOUB Y N 31
A1H4A C30 N61 SING Y N 32
A1H4A C23 C24 DOUB Y N 33
A1H4A C31 N32 SING Y N 34
A1H4A C25 C24 SING Y N 35
A1H4A N61 C60 DOUB Y N 36
A1H4A F58 C55 SING N N 37
A1H4A N32 C60 SING Y N 38
A1H4A N32 C33 SING Y N 39
A1H4A C60 C39 SING Y N 40
A1H4A F56 C55 SING N N 41
A1H4A C55 C54 SING N N 42
A1H4A C55 F57 SING N N 43
A1H4A C33 C34 DOUB Y N 44
A1H4A C59 C54 DOUB Y N 45
A1H4A C59 C40 SING Y N 46
A1H4A C54 C43 SING Y N 47
A1H4A C39 C40 SING N N 48
A1H4A C39 C38 DOUB Y N 49
A1H4A C40 C41 DOUB Y N 50
A1H4A C43 C44 SING N N 51
A1H4A C43 C42 DOUB Y N 52
A1H4A C34 C38 SING Y N 53
A1H4A C34 C35 SING N N 54
A1H4A C41 C42 SING Y N 55
A1H4A O37 C35 DOUB N N 56
A1H4A C35 O36 SING N N 57
A1H4A C41 H1 SING N N 58
A1H4A C42 H2 SING N N 59
A1H4A C44 H3 SING N N 60
A1H4A C44 H4 SING N N 61
A1H4A C44 H5 SING N N 62
A1H4A C59 H6 SING N N 63
A1H4A C11 H7 SING N N 64
A1H4A C11 H8 SING N N 65
A1H4A C13 H9 SING N N 66
A1H4A C13 H10 SING N N 67
A1H4A C14 H11 SING N N 68
A1H4A C14 H12 SING N N 69
A1H4A C16 H13 SING N N 70
A1H4A C16 H14 SING N N 71
A1H4A C17 H15 SING N N 72
A1H4A C17 H16 SING N N 73
A1H4A C22 H17 SING N N 74
A1H4A C23 H18 SING N N 75
A1H4A C24 H19 SING N N 76
A1H4A C25 H20 SING N N 77
A1H4A C26 H21 SING N N 78
A1H4A C28 H22 SING N N 79
A1H4A C28 H23 SING N N 80
A1H4A C29 H24 SING N N 81
A1H4A C29 H25 SING N N 82
A1H4A C4 H26 SING N N 83
A1H4A N6 H27 SING N N 84
A1H4A C7 H28 SING N N 85
A1H4A C7 H29 SING N N 86
A1H4A C8 H30 SING N N 87
A1H4A C8 H31 SING N N 88
A1H4A C10 H33 SING N N 89
A1H4A C10 H34 SING N N 90
A1H4A C31 H35 SING N N 91
A1H4A C33 H36 SING N N 92
A1H4A O36 H37 SING N N 93
A1H4A C38 H38 SING N N 94
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H4A InChI InChI 1.06 "InChI=1S/C35H37F3N6O7S/c1-23-7-8-24(20-28(23)35(36,37)38)27-19-25(34(47)48)21-42-22-29(40-31(27)42)33(46)44-14-13-43(52(49,50)26-5-3-2-4-6-26)11-9-30(44)32(45)39-10-12-41-15-17-51-18-16-41/h2-8,19-22,30H,9-18H2,1H3,(H,39,45)(H,47,48)/t30-/m0/s1"
A1H4A InChIKey InChI 1.06 CYRHEZSFDUZNDQ-PMERELPUSA-N
A1H4A SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O"
A1H4A SMILES CACTVS 3.385 "Cc1ccc(cc1C(F)(F)F)c2cc(cn3cc(nc23)C(=O)N4CCN(CC[CH]4C(=O)NCCN5CCOCC5)[S](=O)(=O)c6ccccc6)C(O)=O"
A1H4A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CC[C@H]4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O"
A1H4A SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(F)(F)F)c2cc(cn3c2nc(c3)C(=O)N4CCN(CCC4C(=O)NCCN5CCOCC5)S(=O)(=O)c6ccccc6)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id A1H4A
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "8-[4-methyl-3-(trifluoromethyl)phenyl]-2-[[(7~{S})-7-(2-morpholin-4-ylethylcarbamoyl)-4-(phenylsulfonyl)-1,4-diazepan-1-yl]carbonyl]imidazo[1,2-a]pyridine-6-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H4A "Create component" 2024-02-13 PDBE
A1H4A "Initial release" 2024-05-22 RCSB
A1H4A "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id A1H4A
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C44
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#