data_A1H4C # _chem_comp.id A1H4C _chem_comp.name "3-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(3-hydroxyphenyl)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ADE _chem_comp.pdbx_synonyms ;5-(((((2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)thio)methyl)-3'-hydroxy-[1,1'-biphenyl]-3-carboxylic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-13 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H4C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RZD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H4C C10 C1 C 0 1 N N N N N N 87.817 -20.733 34.942 4.231 -3.718 0.699 C10 A1H4C 1 A1H4C C13 C2 C 0 1 Y N N N N N 88.475 -18.326 35.159 5.201 -1.498 0.132 C13 A1H4C 2 A1H4C C14 C3 C 0 1 Y N N N N N 88.605 -17.010 34.706 5.135 -0.109 0.138 C14 A1H4C 3 A1H4C C15 C4 C 0 1 Y N N N N N 89.222 -16.020 35.645 6.227 0.690 -0.471 C15 A1H4C 4 A1H4C C16 C5 C 0 1 Y N N N N N 90.259 -16.417 36.515 6.161 2.082 -0.466 C16 A1H4C 5 A1H4C C17 C6 C 0 1 Y N N N N N 90.838 -15.515 37.411 7.179 2.823 -1.033 C17 A1H4C 6 A1H4C C18 C7 C 0 1 Y N N N N N 90.386 -14.194 37.460 8.264 2.188 -1.606 C18 A1H4C 7 A1H4C C19 C8 C 0 1 Y N N N N N 89.352 -13.780 36.612 8.338 0.803 -1.615 C19 A1H4C 8 A1H4C "C3'" C9 C 0 1 N N S N N N 86.151 -14.569 29.131 -3.019 2.691 1.375 "C3'" A1H4C 9 A1H4C C21 C10 C 0 1 Y N N N N N 88.778 -14.688 35.714 7.324 0.051 -1.044 C21 A1H4C 10 A1H4C C22 C11 C 0 1 Y N N N N N 88.133 -16.710 33.413 4.039 0.532 0.716 C22 A1H4C 11 A1H4C "C1'" C12 C 0 1 N N R N N N 83.963 -13.660 28.957 -3.922 1.024 -0.154 "C1'" A1H4C 12 A1H4C C4 C13 C 0 1 Y N N N N N 81.930 -12.109 29.104 -6.000 -0.268 -0.801 C4 A1H4C 13 A1H4C C2 C14 C 0 1 Y N N N N N 80.978 -10.649 27.709 -7.772 0.027 -2.235 C2 A1H4C 14 A1H4C "C4'" C15 C 0 1 N N S N N N 85.149 -15.601 28.563 -1.939 1.864 0.642 "C4'" A1H4C 15 A1H4C C6 C16 C 0 1 Y N N N N N 79.977 -10.865 29.794 -7.744 -1.922 -0.998 C6 A1H4C 16 A1H4C C5 C17 C 0 1 Y N N N N N 80.982 -11.832 30.084 -6.538 -1.505 -0.409 C5 A1H4C 17 A1H4C C8 C18 C 0 1 Y N N N N N 82.287 -13.292 30.890 -4.700 -1.218 0.705 C8 A1H4C 18 A1H4C "C2'" C19 C 0 1 N N R N N N 85.286 -13.431 29.693 -4.353 2.125 0.839 "C2'" A1H4C 19 A1H4C "C5'" C20 C 0 1 N N N N N N 85.105 -16.971 29.267 -0.761 1.580 1.576 "C5'" A1H4C 20 A1H4C C3 C21 C 0 1 N N N N N N 87.052 -17.415 31.200 1.841 0.492 1.906 C3 A1H4C 21 A1H4C C7 C22 C 0 1 Y N N N N N 87.557 -17.711 32.607 3.021 -0.209 1.283 C7 A1H4C 22 A1H4C C1 C23 C 0 1 Y N N N N N 87.457 -19.016 33.092 3.079 -1.588 1.282 C1 A1H4C 23 A1H4C C9 C24 C 0 1 Y N N N N N 87.915 -19.344 34.378 4.171 -2.242 0.706 C9 A1H4C 24 A1H4C N9 N1 N 0 1 Y N N N N N 82.755 -13.065 29.644 -4.840 -0.116 -0.085 N9 A1H4C 25 A1H4C N3 N2 N 0 1 Y N N N N N 81.977 -11.542 27.873 -6.645 0.458 -1.709 N3 A1H4C 26 A1H4C N1 N3 N 0 1 Y N N N N N 79.996 -10.278 28.560 -8.316 -1.128 -1.898 N1 A1H4C 27 A1H4C N6 N4 N 0 1 N N N N N N 78.969 -10.498 30.694 -8.321 -3.131 -0.652 N6 A1H4C 28 A1H4C N7 N5 N 0 1 Y N N N N N 81.219 -12.573 31.179 -5.696 -2.032 0.513 N7 A1H4C 29 A1H4C "O3'" O1 O 0 1 N N N N N N 87.075 -14.155 28.140 -2.895 4.077 1.050 "O3'" A1H4C 30 A1H4C O11 O2 O 0 1 N N N N N N 87.494 -21.673 34.172 5.285 -4.347 0.144 O11 A1H4C 31 A1H4C O12 O3 O 0 1 N N N N N N 88.070 -20.873 36.166 3.332 -4.365 1.199 O12 A1H4C 32 A1H4C O20 O4 O 0 1 N N N N N N 88.899 -12.486 36.650 9.407 0.182 -2.180 O20 A1H4C 33 A1H4C "O4'" O5 O 0 1 N N N N N N 83.860 -15.040 28.808 -2.601 0.633 0.279 "O4'" A1H4C 34 A1H4C "O2'" O6 O 0 1 N N N N N N 85.740 -12.095 29.488 -5.095 3.145 0.166 "O2'" A1H4C 35 A1H4C S1 S1 S 0 1 N N N N N N 85.288 -16.945 31.076 0.554 0.739 0.651 S1 A1H4C 36 A1H4C H47 H1 H 0 1 N N N N N N 88.821 -18.568 36.153 6.046 -1.998 -0.318 H47 A1H4C 37 A1H4C H48 H2 H 0 1 N N N N N N 90.612 -17.437 36.488 5.314 2.581 -0.020 H48 A1H4C 38 A1H4C H49 H3 H 0 1 N N N N N N 91.634 -15.839 38.065 7.126 3.902 -1.028 H49 A1H4C 39 A1H4C H50 H4 H 0 1 N N N N N N 90.833 -13.494 38.150 9.058 2.773 -2.049 H50 A1H4C 40 A1H4C "H3'" H5 H 0 1 N N N N N N 86.688 -15.039 29.968 -2.947 2.543 2.453 "H3'" A1H4C 41 A1H4C H52 H6 H 0 1 N N N N N N 87.981 -14.360 35.064 7.380 -1.027 -1.050 H52 A1H4C 42 A1H4C H53 H7 H 0 1 N N N N N N 88.214 -15.701 33.036 3.987 1.611 0.720 H53 A1H4C 43 A1H4C "H1'" H8 H 0 1 N N N N N N 84.050 -13.192 27.965 -3.886 1.421 -1.169 "H1'" A1H4C 44 A1H4C H2 H9 H 0 1 N N N N N N 80.961 -10.154 26.749 -8.270 0.641 -2.971 H2 A1H4C 45 A1H4C "H4'" H10 H 0 1 N N N N N N 85.329 -15.740 27.487 -1.598 2.391 -0.249 "H4'" A1H4C 46 A1H4C H8 H11 H 0 1 N N N N N N 82.740 -13.990 31.579 -3.882 -1.389 1.390 H8 A1H4C 47 A1H4C "H2'" H12 H 0 1 N N N N N N 85.125 -13.613 30.766 -4.941 1.698 1.652 "H2'" A1H4C 48 A1H4C "H5'2" H13 H 0 0 N N N N N N 84.137 -17.438 29.034 -0.380 2.520 1.976 "H5'2" A1H4C 49 A1H4C "H5'1" H14 H 0 0 N N N N N N 85.918 -17.587 28.855 -1.092 0.944 2.397 "H5'1" A1H4C 50 A1H4C H45 H15 H 0 1 N N N N N N 87.206 -18.316 30.589 1.444 -0.117 2.718 H45 A1H4C 51 A1H4C H44 H16 H 0 1 N N N N N N 87.652 -16.588 30.792 2.157 1.459 2.297 H44 A1H4C 52 A1H4C H46 H17 H 0 1 N N N N N N 87.021 -19.784 32.470 2.280 -2.162 1.727 H46 A1H4C 53 A1H4C HN61 H18 H 0 0 N N N N N N 78.375 -9.815 30.269 -7.893 -3.702 0.005 HN61 A1H4C 54 A1H4C HN62 H19 H 0 0 N N N N N N 78.430 -11.304 30.937 -9.154 -3.407 -1.066 HN62 A1H4C 55 A1H4C "HO3'" H20 H 0 0 N N N N N N 87.574 -14.905 27.838 -3.585 4.634 1.435 "HO3'" A1H4C 56 A1H4C H1 H21 H 0 1 N N N N N N 87.473 -22.489 34.659 5.281 -5.314 0.167 H1 A1H4C 57 A1H4C H51 H22 H 0 1 N N N N N N 88.201 -12.376 36.015 10.137 0.020 -1.567 H51 A1H4C 58 A1H4C "HO2'" H23 H 0 0 N N N N N N 85.124 -11.487 29.879 -5.339 3.891 0.730 "HO2'" A1H4C 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H4C "O3'" "C3'" SING N N 1 A1H4C "C3'" "C2'" SING N N 2 A1H4C "C3'" "C4'" SING N N 3 A1H4C "C4'" "C5'" SING N N 4 A1H4C "O4'" "C4'" SING N N 5 A1H4C "C5'" S1 SING N N 6 A1H4C S1 C3 SING N N 7 A1H4C C3 C7 SING N N 8 A1H4C C7 C22 DOUB Y N 9 A1H4C C7 C1 SING Y N 10 A1H4C C1 C9 DOUB Y N 11 A1H4C C9 C10 SING N N 12 A1H4C C13 C9 SING Y N 13 A1H4C O11 C10 SING N N 14 A1H4C C10 O12 DOUB N N 15 A1H4C C14 C13 DOUB Y N 16 A1H4C C15 C14 SING N N 17 A1H4C C22 C14 SING Y N 18 A1H4C C21 C15 DOUB Y N 19 A1H4C C15 C16 SING Y N 20 A1H4C C16 C17 DOUB Y N 21 A1H4C C17 C18 SING Y N 22 A1H4C C18 C19 DOUB Y N 23 A1H4C O20 C19 SING N N 24 A1H4C C19 C21 SING Y N 25 A1H4C "C1'" "O4'" SING N N 26 A1H4C N9 "C1'" SING N N 27 A1H4C "C2'" "C1'" SING N N 28 A1H4C C8 N9 SING Y N 29 A1H4C N9 C4 SING Y N 30 A1H4C C4 N3 SING Y N 31 A1H4C C4 C5 DOUB Y N 32 A1H4C N3 C2 DOUB Y N 33 A1H4C C2 N1 SING Y N 34 A1H4C N1 C6 DOUB Y N 35 A1H4C C6 C5 SING Y N 36 A1H4C N6 C6 SING N N 37 A1H4C C5 N7 SING Y N 38 A1H4C N7 C8 DOUB Y N 39 A1H4C "O2'" "C2'" SING N N 40 A1H4C C13 H47 SING N N 41 A1H4C C16 H48 SING N N 42 A1H4C C17 H49 SING N N 43 A1H4C C18 H50 SING N N 44 A1H4C "C3'" "H3'" SING N N 45 A1H4C C21 H52 SING N N 46 A1H4C C22 H53 SING N N 47 A1H4C "C1'" "H1'" SING N N 48 A1H4C C2 H2 SING N N 49 A1H4C "C4'" "H4'" SING N N 50 A1H4C C8 H8 SING N N 51 A1H4C "C2'" "H2'" SING N N 52 A1H4C "C5'" "H5'2" SING N N 53 A1H4C "C5'" "H5'1" SING N N 54 A1H4C C3 H45 SING N N 55 A1H4C C3 H44 SING N N 56 A1H4C C1 H46 SING N N 57 A1H4C N6 HN61 SING N N 58 A1H4C N6 HN62 SING N N 59 A1H4C "O3'" "HO3'" SING N N 60 A1H4C O11 H1 SING N N 61 A1H4C O20 H51 SING N N 62 A1H4C "O2'" "HO2'" SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H4C InChI InChI 1.06 "InChI=1S/C24H23N5O6S/c25-21-18-22(27-10-26-21)29(11-28-18)23-20(32)19(31)17(35-23)9-36-8-12-4-14(6-15(5-12)24(33)34)13-2-1-3-16(30)7-13/h1-7,10-11,17,19-20,23,30-32H,8-9H2,(H,33,34)(H2,25,26,27)/t17-,19-,20-,23-/m1/s1" A1H4C InChIKey InChI 1.06 AZOYKQRHBFYEDX-ZDXOVATRSA-N A1H4C SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCc4cc(cc(c4)c5cccc(O)c5)C(O)=O)[C@@H](O)[C@H]3O" A1H4C SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCc4cc(cc(c4)c5cccc(O)c5)C(O)=O)[CH](O)[CH]3O" A1H4C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)O)c2cc(cc(c2)C(=O)O)CSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1H4C SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)O)c2cc(cc(c2)C(=O)O)CSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id A1H4C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(3-hydroxyphenyl)benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H4C "Create component" 2024-02-13 PDBE A1H4C "Initial release" 2024-02-21 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H4C _pdbx_chem_comp_synonyms.name ;5-(((((2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)thio)methyl)-3'-hydroxy-[1,1'-biphenyl]-3-carboxylic acid ; _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #