data_A1H4V # _chem_comp.id A1H4V _chem_comp.name "(2~{R},4~{R})-5,5-dimethyl-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-19 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H4V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S1Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H4V N1 N1 N 0 1 Y N N N N N 14.940 -31.056 13.038 1.366 -3.351 0.123 N1 A1H4V 1 A1H4V N3 N2 N 0 1 N N N N N N 10.300 -30.846 14.832 -1.755 0.448 0.911 N3 A1H4V 2 A1H4V C4 C1 C 0 1 Y N N N N N 12.160 -31.002 13.323 -0.032 -1.009 -0.099 C4 A1H4V 3 A1H4V C5 C2 C 0 1 Y N N N N N 12.768 -30.810 12.050 1.347 -1.003 0.032 C5 A1H4V 4 A1H4V C6 C3 C 0 1 Y N N N N N 14.146 -30.885 11.961 2.020 -2.205 0.142 C6 A1H4V 5 A1H4V C7 C4 C 0 1 N N R N N N 8.896 -31.201 14.899 -2.802 1.417 0.577 C7 A1H4V 6 A1H4V C8 C5 C 0 1 N N N N N N 8.437 -30.800 16.295 -4.041 1.087 1.369 C8 A1H4V 7 A1H4V C10 C6 C 0 1 N N N N N N 7.283 -32.908 14.442 -2.958 2.815 -1.520 C10 A1H4V 8 A1H4V C2 C7 C 0 1 Y N N N N N 14.396 -31.169 14.245 0.055 -3.400 -0.002 C2 A1H4V 9 A1H4V C2A C8 C 0 1 N N N N N N 15.358 -31.324 15.393 -0.643 -4.735 -0.019 C2A A1H4V 10 A1H4V C3 C9 C 0 1 Y N N N N N 13.010 -31.113 14.435 -0.689 -2.235 -0.116 C3 A1H4V 11 A1H4V O3 O1 O 0 1 N N N N N N 12.552 -31.337 15.611 -2.042 -2.290 -0.243 O3 A1H4V 12 A1H4V C4A C10 C 0 1 N N R N N N 10.654 -31.008 13.452 -0.802 0.281 -0.221 C4A A1H4V 13 A1H4V C5A C11 C 0 1 N N N N N N 11.967 -30.658 10.777 2.105 0.300 0.055 C5A A1H4V 14 A1H4V O4P O2 O 0 1 N N N N N N 11.804 -29.225 10.488 3.509 0.033 0.080 O4P A1H4V 15 A1H4V P P1 P 0 1 N N N N N N 10.700 -28.876 9.317 4.622 1.197 0.109 P A1H4V 16 A1H4V O1P O3 O 0 1 N N N N N N 11.169 -27.499 8.897 4.406 2.114 -1.032 O1P A1H4V 17 A1H4V O2P O4 O 0 1 N N N N N N 10.925 -29.901 8.206 4.503 2.019 1.488 O2P A1H4V 18 A1H4V O3P O5 O 0 1 N N N N N N 9.308 -28.802 9.931 6.087 0.540 0.000 O3P A1H4V 19 A1H4V S1 S1 S 0 1 N N N N N N 9.679 -32.556 13.002 -1.964 0.228 -1.649 S1 A1H4V 20 A1H4V C9 C12 C 0 1 N N N N N N 8.775 -32.713 14.638 -3.158 1.421 -0.922 C9 A1H4V 21 A1H4V C11 C13 C 0 1 N N N N N N 9.311 -33.717 15.701 -4.595 0.942 -1.136 C11 A1H4V 22 A1H4V O12 O6 O 0 1 N N N N N N 7.276 -30.494 16.473 -4.999 2.013 1.532 O12 A1H4V 23 A1H4V O14 O7 O 0 1 N N N N N N 9.300 -30.967 17.166 -4.171 -0.010 1.858 O14 A1H4V 24 A1H4V HN3 H1 H 0 1 N N N N N N 10.845 -31.454 15.409 -2.155 -0.439 1.181 HN3 A1H4V 25 A1H4V H6 H3 H 0 1 N N N N N N 14.606 -30.803 10.987 3.095 -2.207 0.246 H6 A1H4V 26 A1H4V H7 H4 H 0 1 N N N N N N 8.317 -30.649 14.144 -2.461 2.414 0.857 H7 A1H4V 27 A1H4V H10 H5 H 0 1 N N N N N N 6.792 -32.995 15.423 -1.916 3.114 -1.404 H10 A1H4V 28 A1H4V H101 H6 H 0 0 N N N N N N 6.869 -32.045 13.900 -3.214 2.796 -2.579 H101 A1H4V 29 A1H4V H102 H7 H 0 0 N N N N N N 7.106 -33.825 13.861 -3.601 3.527 -1.003 H102 A1H4V 30 A1H4V H2A2 H8 H 0 0 N N N N N N 16.390 -31.316 15.011 -0.909 -5.019 1.000 H2A2 A1H4V 31 A1H4V H2A3 H9 H 0 0 N N N N N N 15.222 -30.492 16.100 -1.546 -4.666 -0.624 H2A3 A1H4V 32 A1H4V H2A1 H10 H 0 0 N N N N N N 15.165 -32.277 15.907 0.022 -5.488 -0.443 H2A1 A1H4V 33 A1H4V H2 H11 H 0 1 N N N N N N 11.605 -31.268 15.601 -2.517 -2.273 0.599 H2 A1H4V 34 A1H4V H4A H12 H 0 1 N N N N N N 10.226 -30.199 12.841 -0.126 1.133 -0.295 H4A A1H4V 35 A1H4V H5A1 H13 H 0 0 N N N N N N 12.498 -31.145 9.946 1.861 0.878 -0.836 H5A1 A1H4V 36 A1H4V H5A2 H14 H 0 0 N N N N N N 10.979 -31.124 10.904 1.827 0.866 0.944 H5A2 A1H4V 37 A1H4V H3 H15 H 0 1 N N N N N N 11.321 -29.474 7.456 4.633 1.480 2.280 H3 A1H4V 38 A1H4V H4 H16 H 0 1 N N N N N N 9.008 -27.901 9.929 6.809 1.184 0.011 H4 A1H4V 39 A1H4V H11 H17 H 0 1 N N N N N N 8.669 -33.684 16.594 -5.281 1.605 -0.609 H11 A1H4V 40 A1H4V H111 H18 H 0 0 N N N N N N 9.303 -34.734 15.282 -4.826 0.952 -2.201 H111 A1H4V 41 A1H4V H112 H19 H 0 0 N N N N N N 10.340 -33.443 15.978 -4.701 -0.072 -0.751 H112 A1H4V 42 A1H4V H5 H20 H 0 1 N N N N N N 7.113 -30.396 17.404 -5.775 1.755 2.048 H5 A1H4V 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H4V N1 C2 DOUB Y N 1 A1H4V N1 C6 SING Y N 2 A1H4V C2 C2A SING N N 3 A1H4V C2 C3 SING Y N 4 A1H4V C3 O3 SING N N 5 A1H4V C3 C4 DOUB Y N 6 A1H4V C4 C4A SING N N 7 A1H4V C4 C5 SING Y N 8 A1H4V C4A N3 SING N N 9 A1H4V C4A S1 SING N N 10 A1H4V C5 C6 DOUB Y N 11 A1H4V C5 C5A SING N N 12 A1H4V C5A O4P SING N N 13 A1H4V O4P P SING N N 14 A1H4V P O1P DOUB N N 15 A1H4V P O2P SING N N 16 A1H4V P O3P SING N N 17 A1H4V N3 C7 SING N N 18 A1H4V S1 C9 SING N N 19 A1H4V C7 C8 SING N N 20 A1H4V C7 C9 SING N N 21 A1H4V C8 O12 SING N N 22 A1H4V C8 O14 DOUB N N 23 A1H4V C9 C10 SING N N 24 A1H4V C9 C11 SING N N 25 A1H4V N3 HN3 SING N N 26 A1H4V C6 H6 SING N N 27 A1H4V C7 H7 SING N N 28 A1H4V C10 H10 SING N N 29 A1H4V C10 H101 SING N N 30 A1H4V C10 H102 SING N N 31 A1H4V C2A H2A2 SING N N 32 A1H4V C2A H2A3 SING N N 33 A1H4V C2A H2A1 SING N N 34 A1H4V O3 H2 SING N N 35 A1H4V C4A H4A SING N N 36 A1H4V C5A H5A1 SING N N 37 A1H4V C5A H5A2 SING N N 38 A1H4V O2P H3 SING N N 39 A1H4V O3P H4 SING N N 40 A1H4V C11 H11 SING N N 41 A1H4V C11 H111 SING N N 42 A1H4V C11 H112 SING N N 43 A1H4V O12 H5 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H4V InChI InChI 1.06 "InChI=1S/C13H19N2O7PS/c1-6-9(16)8(7(4-14-6)5-22-23(19,20)21)11-15-10(12(17)18)13(2,3)24-11/h4,10-11,15-16H,5H2,1-3H3,(H,17,18)(H2,19,20,21)/t10-,11-/m1/s1" A1H4V InChIKey InChI 1.06 YADZKSQVDLLMOU-GHMZBOCLSA-N A1H4V SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@@H]2N[C@H](C(O)=O)C(C)(C)S2)c1O" A1H4V SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH]2N[CH](C(O)=O)C(C)(C)S2)c1O" A1H4V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@@H]2N[C@@H](C(S2)(C)C)C(=O)O)O" A1H4V SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C2NC(C(S2)(C)C)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H4V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{R})-5,5-dimethyl-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H4V "Create component" 2024-02-19 PDBE A1H4V "Initial release" 2025-03-05 RCSB #