data_A1H5T # _chem_comp.id A1H5T _chem_comp.name "(~{Z},3~{R})-3-oxidanyldodec-5-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-07 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H5T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S8N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H5T O O1 O 0 1 N N N N N N -4.354 -0.310 -0.422 -5.016 0.184 -0.766 O A1H5T 1 A1H5T CA C1 C 0 1 N N N N N N -6.696 -0.199 0.166 -3.130 0.945 0.425 CA A1H5T 2 A1H5T C C2 C 0 1 N N N N N N -5.504 -0.247 -0.850 -4.513 1.097 -0.155 C A1H5T 3 A1H5T CB C3 C 0 1 N N R N N N -6.685 0.935 1.176 -2.591 -0.450 0.098 CB A1H5T 4 A1H5T CG2 C4 C 0 1 N N N N N N -6.776 2.285 0.440 -1.143 -0.562 0.577 CG2 A1H5T 5 A1H5T OG1 O2 O 0 1 N N N N N N -7.815 0.865 2.018 -3.389 -1.435 0.759 OG1 A1H5T 6 A1H5T CD C5 C 0 1 N N N N N N -8.092 2.658 -0.163 -0.573 -1.889 0.148 CD A1H5T 7 A1H5T CE C6 C 0 1 N N N N N N -8.238 3.626 -1.163 0.560 -1.934 -0.508 CE A1H5T 8 A1H5T CH C7 C 0 1 N N N N N N -6.624 4.175 -3.143 2.805 -0.929 -0.192 CH A1H5T 9 A1H5T CI C8 C 0 1 N N N N N N -4.471 4.250 -4.711 5.062 0.094 0.122 CI A1H5T 10 A1H5T CK C9 C 0 1 N N N N N N -3.222 5.047 -5.243 5.893 1.367 -0.058 CK A1H5T 11 A1H5T CL C10 C 0 1 N N N N N N -2.428 4.358 -6.443 7.320 1.118 0.436 CL A1H5T 12 A1H5T CF C11 C 0 1 N N N N N N -7.125 4.578 -1.718 1.379 -0.681 -0.686 CF A1H5T 13 A1H5T CT C12 C 0 1 N N N N N N -5.337 4.958 -3.631 3.636 0.343 -0.372 CT A1H5T 14 A1H5T O1 O3 O 0 1 N Y N N N N -5.811 -0.380 -2.159 -5.186 2.247 0.008 O1 A1H5T 15 A1H5T HA1 H1 H 0 1 N N N N N N -7.627 -0.119 -0.415 -2.471 1.699 -0.006 HA1 A1H5T 16 A1H5T HA2 H2 H 0 1 N N N N N N -6.694 -1.145 0.727 -3.173 1.074 1.506 HA2 A1H5T 17 A1H5T HB H3 H 0 1 N N N N N N -5.753 0.901 1.759 -2.632 -0.612 -0.979 HB A1H5T 18 A1H5T HG22 H4 H 0 0 N N N N N N -6.035 2.267 -0.373 -0.553 0.245 0.142 HG22 A1H5T 19 A1H5T HG21 H5 H 0 0 N N N N N N -6.510 3.072 1.161 -1.112 -0.488 1.664 HG21 A1H5T 20 A1H5T HG1 H6 H 0 1 N N N N N N -7.791 1.581 2.642 -3.399 -1.351 1.722 HG1 A1H5T 21 A1H5T HD H7 H 0 1 N N N N N N -8.978 2.153 0.192 -1.099 -2.803 0.381 HD A1H5T 22 A1H5T HE H8 H 0 1 N N N N N N -9.221 3.727 -1.598 0.908 -2.869 -0.922 HE A1H5T 23 A1H5T HH2 H9 H 0 1 N N N N N N -7.436 4.367 -3.860 2.782 -1.202 0.863 HH2 A1H5T 24 A1H5T HH1 H10 H 0 1 N N N N N N -6.390 3.100 -3.134 3.253 -1.740 -0.766 HH1 A1H5T 25 A1H5T HI2 H11 H 0 1 N N N N N N -5.121 4.034 -5.572 5.510 -0.716 -0.452 HI2 A1H5T 26 A1H5T HI1 H12 H 0 1 N N N N N N -4.106 3.306 -4.281 5.039 -0.178 1.177 HI1 A1H5T 27 A1H5T HK2 H13 H 0 1 N N N N N N -2.522 5.179 -4.405 5.916 1.639 -1.113 HK2 A1H5T 28 A1H5T HK1 H14 H 0 1 N N N N N N -3.570 6.032 -5.588 5.445 2.178 0.517 HK1 A1H5T 29 A1H5T HL2 H15 H 0 1 N N N N N N -1.580 4.995 -6.735 7.297 0.846 1.491 HL2 A1H5T 30 A1H5T HL3 H16 H 0 1 N N N N N N -2.054 3.376 -6.119 7.767 0.308 -0.139 HL3 A1H5T 31 A1H5T HL1 H17 H 0 1 N N N N N N -3.103 4.228 -7.302 7.911 2.025 0.308 HL1 A1H5T 32 A1H5T HF2 H18 H 0 1 N N N N N N -6.269 4.555 -1.027 1.402 -0.409 -1.741 HF2 A1H5T 33 A1H5T HF1 H19 H 0 1 N N N N N N -7.531 5.599 -1.766 0.931 0.130 -0.111 HF1 A1H5T 34 A1H5T HT2 H20 H 0 1 N N N N N N -4.699 5.135 -2.753 3.659 0.615 -1.427 HT2 A1H5T 35 A1H5T HT1 H21 H 0 1 N N N N N N -5.668 5.922 -4.045 3.188 1.153 0.203 HT1 A1H5T 36 A1H5T H1 H22 H 0 1 N N N N N N -5.016 -0.523 -2.658 -6.069 2.298 -0.381 H1 A1H5T 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H5T CL CK SING N N 1 A1H5T CK CI SING N N 2 A1H5T CI CT SING N N 3 A1H5T CT CH SING N N 4 A1H5T CH CF SING N N 5 A1H5T CF CE SING N N 6 A1H5T CE CD DOUB N Z 7 A1H5T C O DOUB N N 8 A1H5T C CA SING N N 9 A1H5T CD CG2 SING N N 10 A1H5T CA CB SING N N 11 A1H5T CG2 CB SING N N 12 A1H5T CB OG1 SING N N 13 A1H5T C O1 SING N N 14 A1H5T CA HA1 SING N N 15 A1H5T CA HA2 SING N N 16 A1H5T CB HB SING N N 17 A1H5T CG2 HG22 SING N N 18 A1H5T CG2 HG21 SING N N 19 A1H5T OG1 HG1 SING N N 20 A1H5T CD HD SING N N 21 A1H5T CE HE SING N N 22 A1H5T CH HH2 SING N N 23 A1H5T CH HH1 SING N N 24 A1H5T CI HI2 SING N N 25 A1H5T CI HI1 SING N N 26 A1H5T CK HK2 SING N N 27 A1H5T CK HK1 SING N N 28 A1H5T CL HL2 SING N N 29 A1H5T CL HL3 SING N N 30 A1H5T CL HL1 SING N N 31 A1H5T CF HF2 SING N N 32 A1H5T CF HF1 SING N N 33 A1H5T CT HT2 SING N N 34 A1H5T CT HT1 SING N N 35 A1H5T O1 H1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H5T InChI InChI 1.06 "InChI=1S/C12H22O3/c1-2-3-4-5-6-7-8-9-11(13)10-12(14)15/h7-8,11,13H,2-6,9-10H2,1H3,(H,14,15)/b8-7-/t11-/m1/s1" A1H5T InChIKey InChI 1.06 GZUALOWLHSCENG-SKVAFPRGSA-N A1H5T SMILES_CANONICAL CACTVS 3.385 "CCCCCC\C=C/C[C@@H](O)CC(O)=O" A1H5T SMILES CACTVS 3.385 "CCCCCCC=CC[CH](O)CC(O)=O" A1H5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC/C=C\C[C@H](CC(=O)O)O" A1H5T SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC=CCC(CC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H5T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z},3~{R})-3-oxidanyldodec-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H5T "Create component" 2024-03-07 PDBE A1H5T "Modify PCM" 2024-09-27 PDBE A1H5T "Initial release" 2025-02-26 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H5T _pdbx_chem_comp_pcm.modified_residue_id DLE _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom N _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #