data_A1H5U # _chem_comp.id A1H5U _chem_comp.name "(5aSa,17aRa)- 20-Chloro-2-[(2S,5R)-2,5-dimethyl-4-(prop-2-enoyl)piperazin-1-yl]-14,17-difluoro-6-(propan-2-yl)-11,12-dihydro-4H-1,18-(ethanediylidene)pyrido[4,3-e]pyrimido[1,6-g][1,4,7,9]benzodioxadiazacyclododecin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H33 Cl F2 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HYDROXYETHYLAMINE BACE INHIBITOR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 639.092 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S8C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H5U C1 C1 C 0 1 N N N N N N -12.450 -0.454 -20.024 -0.064 5.650 -0.410 C1 A1H5U 1 A1H5U C2 C2 C 0 1 N N N N N N -13.356 0.743 -19.749 0.287 4.291 -1.018 C2 A1H5U 2 A1H5U C3 C3 C 0 1 N N N N N N -13.954 1.266 -21.050 0.278 4.397 -2.545 C3 A1H5U 3 A1H5U C6 C4 C 0 1 Y N N N N N -16.032 -1.150 -18.067 3.915 4.356 -0.565 C6 A1H5U 4 A1H5U C7 C5 C 0 1 Y N N N N N -16.549 -0.307 -17.103 4.214 3.149 0.031 C7 A1H5U 5 A1H5U C8 C6 C 0 1 Y N N N N N -15.990 0.958 -16.993 3.184 2.295 0.405 C8 A1H5U 6 A1H5U O9 O1 O 0 1 N N N N N N -16.384 1.917 -16.090 3.454 1.096 0.968 O9 A1H5U 7 A1H5U C10 C7 C 0 1 N N N N N N -17.710 1.852 -15.523 4.808 0.744 1.245 C10 A1H5U 8 A1H5U C11 C8 C 0 1 N N N N N N -18.768 2.072 -16.577 5.303 -0.237 0.179 C11 A1H5U 9 A1H5U C13 C9 C 0 1 Y N N N N N -19.352 3.792 -18.156 3.905 -2.080 -0.334 C13 A1H5U 10 A1H5U C14 C10 C 0 1 Y N N N N N -20.668 3.539 -18.511 4.927 -3.021 -0.421 C14 A1H5U 11 A1H5U C16 C11 C 0 1 Y N N N N N -21.159 3.864 -19.755 4.689 -4.357 -0.159 C16 A1H5U 12 A1H5U C21 C12 C 0 1 Y N N N N N -17.089 4.655 -18.670 1.455 -1.555 -0.119 C21 A1H5U 13 A1H5U C23 C13 C 0 1 Y N N N N N -15.093 3.761 -18.031 0.632 0.557 0.334 C23 A1H5U 14 A1H5U C25 C14 C 0 1 Y N N N N N -14.944 1.317 -17.852 1.860 2.693 0.172 C25 A1H5U 15 A1H5U C26 C15 C 0 1 N N N N N N -13.110 2.737 -17.077 -0.205 2.546 1.250 C26 A1H5U 16 A1H5U C31 C16 C 0 1 N N N N N N -11.329 6.392 -16.481 -3.405 -0.912 1.217 C31 A1H5U 17 A1H5U C36 C17 C 0 1 N N N N N N -11.172 7.688 -19.079 -4.971 0.755 -0.660 C36 A1H5U 18 A1H5U C37 C18 C 0 1 N N S N N N -12.508 7.272 -18.491 -4.162 1.387 0.480 C37 A1H5U 19 A1H5U C39 C19 C 0 1 N N N N N N -13.134 8.467 -17.781 -3.573 2.720 0.014 C39 A1H5U 20 A1H5U C40 C20 C 0 1 N N N N N N -9.546 9.116 -17.979 -6.586 -1.050 -0.284 C40 A1H5U 21 A1H5U O41 O2 O 0 1 N N N N N N -9.903 10.031 -18.705 -6.859 -2.164 0.111 O41 A1H5U 22 A1H5U C42 C21 C 0 1 N N N N N N -8.366 9.290 -17.044 -7.680 -0.135 -0.772 C42 A1H5U 23 A1H5U C43 C22 C 0 1 N N N N N N -7.331 10.251 -17.604 -9.029 -0.849 -0.664 C43 A1H5U 24 A1H5U N35 N1 N 0 1 N N N N N N -10.204 7.932 -18.005 -5.306 -0.631 -0.287 N35 A1H5U 25 A1H5U N30 N2 N 0 1 N N N N N N -12.284 6.149 -17.561 -3.073 0.470 0.847 N30 A1H5U 26 A1H5U C32 C23 C 0 1 N N R N N N -9.989 6.820 -17.059 -4.216 -1.547 0.080 C32 A1H5U 27 A1H5U C34 C24 C 0 1 N N N N N N -9.303 5.648 -17.735 -4.803 -2.880 0.550 C34 A1H5U 28 A1H5U C29 C25 C 0 1 N N N N N N -13.091 5.033 -17.491 -1.774 0.897 0.844 C29 A1H5U 29 A1H5U N28 N3 N 0 1 N N N N N N -12.499 3.949 -17.006 -1.449 2.096 1.303 N28 A1H5U 30 A1H5U O27 O3 O 0 1 N N N N N N -12.628 1.726 -16.575 0.082 3.557 1.871 O27 A1H5U 31 A1H5U N24 N4 N 0 1 N N S N N N -14.346 2.633 -17.754 0.775 1.899 0.550 N24 A1H5U 32 A1H5U C4 C26 C 0 1 Y N N N N N -14.483 0.398 -18.800 1.656 3.870 -0.552 C4 A1H5U 33 A1H5U N5 N5 N 0 1 Y N N N N N -15.029 -0.823 -18.899 2.668 4.663 -0.847 N5 A1H5U 34 A1H5U O12 O4 O 0 1 N N N N N N -18.829 3.476 -16.909 4.183 -0.768 -0.537 O12 A1H5U 35 A1H5U F15 F1 F 0 1 N N N N N N -21.486 2.955 -17.604 6.173 -2.625 -0.757 F15 A1H5U 36 A1H5U C17 C27 C 0 1 Y N N N N N -20.315 4.461 -20.677 3.416 -4.763 0.199 C17 A1H5U 37 A1H5U C18 C28 C 0 1 Y N N N N N -19.010 4.712 -20.322 2.380 -3.847 0.263 C18 A1H5U 38 A1H5U F19 F2 F 0 1 N N N N N N -18.188 5.297 -21.229 1.186 -4.271 0.731 F19 A1H5U 39 A1H5U C20 C29 C 0 1 Y N N N N N -18.494 4.392 -19.074 2.593 -2.502 -0.067 C20 A1H5U 40 A1H5U N22 N6 N 0 1 Y N N N N N -16.357 3.568 -18.400 1.645 -0.268 0.139 N22 A1H5U 41 A1H5U C44 C30 C 0 1 Y N N N N N -14.480 5.015 -17.906 -0.684 0.038 0.359 C44 A1H5U 42 A1H5U C45 C31 C 0 1 Y N N N N N -15.260 6.122 -18.189 -0.926 -1.270 -0.070 C45 A1H5U 43 A1H5U C46 C32 C 0 1 Y N N N N N -16.570 5.930 -18.572 0.166 -2.046 -0.345 C46 A1H5U 44 A1H5U CL47 CL1 CL 0 0 N N N N N N -17.516 7.331 -18.918 -0.088 -3.604 -1.070 CL47 A1H5U 45 A1H5U H49 H1 H 0 1 N N N N N N -12.027 -0.819 -19.077 0.671 6.390 -0.727 H49 A1H5U 46 A1H5U H50 H2 H 0 1 N N N N N N -13.036 -1.256 -20.497 -1.055 5.955 -0.748 H50 A1H5U 47 A1H5U H48 H3 H 0 1 N N N N N N -11.635 -0.150 -20.697 -0.058 5.574 0.677 H48 A1H5U 48 A1H5U H51 H4 H 0 1 N N N N N N -12.750 1.542 -19.298 -0.449 3.551 -0.702 H51 A1H5U 49 A1H5U H52 H5 H 0 1 N N N N N N -14.604 2.127 -20.835 1.013 5.137 -2.861 H52 A1H5U 50 A1H5U H53 H6 H 0 1 N N N N N N -13.144 1.577 -21.727 0.528 3.429 -2.978 H53 A1H5U 51 A1H5U H54 H7 H 0 1 N N N N N N -14.545 0.471 -21.527 -0.712 4.702 -2.882 H54 A1H5U 52 A1H5U H55 H8 H 0 1 N N N N N N -16.462 -2.137 -18.158 4.710 5.039 -0.823 H55 A1H5U 53 A1H5U H56 H9 H 0 1 N N N N N N -17.358 -0.621 -16.459 5.252 2.893 0.180 H56 A1H5U 54 A1H5U H58 H10 H 0 1 N N N N N N -17.808 2.628 -14.750 5.456 1.623 1.269 H58 A1H5U 55 A1H5U H57 H11 H 0 1 N N N N N N -17.857 0.861 -15.069 4.869 0.267 2.229 H57 A1H5U 56 A1H5U H60 H12 H 0 1 N N N N N N -19.744 1.743 -16.191 5.971 0.277 -0.512 H60 A1H5U 57 A1H5U H59 H13 H 0 1 N N N N N N -18.515 1.493 -17.477 5.848 -1.050 0.669 H59 A1H5U 58 A1H5U H61 H14 H 0 1 N N N N N N -22.188 3.656 -20.009 5.492 -5.074 -0.231 H61 A1H5U 59 A1H5U H63 H15 H 0 1 N N N N N N -11.714 7.187 -15.826 -2.488 -1.480 1.373 H63 A1H5U 60 A1H5U H64 H16 H 0 1 N N N N N N -11.196 5.469 -15.898 -3.996 -0.914 2.133 H64 A1H5U 61 A1H5U H68 H17 H 0 1 N N N N N N -10.797 6.887 -19.732 -5.887 1.323 -0.817 H68 A1H5U 62 A1H5U H69 H18 H 0 1 N N N N N N -11.304 8.609 -19.666 -4.377 0.755 -1.574 H69 A1H5U 63 A1H5U H38 H19 H 0 1 N N N N N N -13.174 6.950 -19.305 -4.810 1.553 1.340 H38 A1H5U 64 A1H5U H72 H20 H 0 1 N N N N N N -14.103 8.173 -17.352 -4.367 3.343 -0.398 H72 A1H5U 65 A1H5U H70 H21 H 0 1 N N N N N N -12.465 8.807 -16.977 -3.114 3.230 0.861 H70 A1H5U 66 A1H5U H71 H22 H 0 1 N N N N N N -13.285 9.284 -18.502 -2.820 2.537 -0.752 H71 A1H5U 67 A1H5U H77 H23 H 0 1 N N N N N N -8.730 9.681 -16.082 -7.697 0.768 -0.162 H77 A1H5U 68 A1H5U H73 H24 H 0 1 N N N N N N -7.891 8.310 -16.885 -7.493 0.133 -1.812 H73 A1H5U 69 A1H5U H1 H25 H 0 1 N N N N N N -6.496 10.346 -16.894 -9.011 -1.752 -1.275 H1 A1H5U 70 A1H5U H74 H26 H 0 1 N N N N N N -6.955 9.866 -18.563 -9.216 -1.117 0.376 H74 A1H5U 71 A1H5U H75 H27 H 0 1 N N N N N N -7.793 11.237 -17.760 -9.819 -0.187 -1.017 H75 A1H5U 72 A1H5U H33 H28 H 0 1 N N N N N N -9.350 7.169 -16.234 -3.571 -1.712 -0.782 H33 A1H5U 73 A1H5U H65 H29 H 0 1 N N N N N N -9.157 4.837 -17.006 -5.355 -3.342 -0.268 H65 A1H5U 74 A1H5U H66 H30 H 0 1 N N N N N N -9.928 5.286 -18.565 -3.996 -3.541 0.863 H66 A1H5U 75 A1H5U H67 H31 H 0 1 N N N N N N -8.326 5.970 -18.125 -5.476 -2.705 1.389 H67 A1H5U 76 A1H5U H62 H32 H 0 1 N N N N N N -20.676 4.725 -21.660 3.226 -5.801 0.426 H62 A1H5U 77 A1H5U H76 H33 H 0 1 N N N N N N -14.850 7.118 -18.111 -1.924 -1.675 -0.138 H76 A1H5U 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H5U F19 C18 SING N N 1 A1H5U C3 C2 SING N N 2 A1H5U C17 C18 DOUB Y N 3 A1H5U C17 C16 SING Y N 4 A1H5U C18 C20 SING Y N 5 A1H5U C1 C2 SING N N 6 A1H5U C16 C14 DOUB Y N 7 A1H5U C2 C4 SING N N 8 A1H5U C36 C37 SING N N 9 A1H5U C36 N35 SING N N 10 A1H5U C20 C21 SING N N 11 A1H5U C20 C13 DOUB Y N 12 A1H5U CL47 C46 SING N N 13 A1H5U N5 C4 DOUB Y N 14 A1H5U N5 C6 SING Y N 15 A1H5U C4 C25 SING Y N 16 A1H5U O41 C40 DOUB N N 17 A1H5U C21 C46 DOUB Y N 18 A1H5U C21 N22 SING Y N 19 A1H5U C46 C45 SING Y N 20 A1H5U C14 C13 SING Y N 21 A1H5U C14 F15 SING N N 22 A1H5U C37 C39 SING N N 23 A1H5U C37 N30 SING N N 24 A1H5U N22 C23 DOUB Y N 25 A1H5U C45 C44 DOUB Y N 26 A1H5U C13 O12 SING N N 27 A1H5U C6 C7 DOUB Y N 28 A1H5U C23 C44 SING Y N 29 A1H5U C23 N24 SING N N 30 A1H5U N35 C40 SING N N 31 A1H5U N35 C32 SING N N 32 A1H5U C40 C42 SING N N 33 A1H5U C44 C29 SING N N 34 A1H5U C25 N24 SING N N 35 A1H5U C25 C8 DOUB Y N 36 A1H5U N24 C26 SING N N 37 A1H5U C34 C32 SING N N 38 A1H5U C43 C42 SING N N 39 A1H5U N30 C29 SING N N 40 A1H5U N30 C31 SING N N 41 A1H5U C29 N28 DOUB N N 42 A1H5U C7 C8 SING Y N 43 A1H5U C26 N28 SING N N 44 A1H5U C26 O27 DOUB N N 45 A1H5U C32 C31 SING N N 46 A1H5U C8 O9 SING N N 47 A1H5U O12 C11 SING N N 48 A1H5U C11 C10 SING N N 49 A1H5U O9 C10 SING N N 50 A1H5U C1 H49 SING N N 51 A1H5U C1 H50 SING N N 52 A1H5U C1 H48 SING N N 53 A1H5U C2 H51 SING N N 54 A1H5U C3 H52 SING N N 55 A1H5U C3 H53 SING N N 56 A1H5U C3 H54 SING N N 57 A1H5U C6 H55 SING N N 58 A1H5U C7 H56 SING N N 59 A1H5U C10 H58 SING N N 60 A1H5U C10 H57 SING N N 61 A1H5U C11 H60 SING N N 62 A1H5U C11 H59 SING N N 63 A1H5U C16 H61 SING N N 64 A1H5U C31 H63 SING N N 65 A1H5U C31 H64 SING N N 66 A1H5U C36 H68 SING N N 67 A1H5U C36 H69 SING N N 68 A1H5U C37 H38 SING N N 69 A1H5U C39 H72 SING N N 70 A1H5U C39 H70 SING N N 71 A1H5U C39 H71 SING N N 72 A1H5U C42 H77 SING N N 73 A1H5U C42 H73 SING N N 74 A1H5U C43 H1 SING N N 75 A1H5U C43 H74 SING N N 76 A1H5U C43 H75 SING N N 77 A1H5U C32 H33 SING N N 78 A1H5U C34 H65 SING N N 79 A1H5U C34 H66 SING N N 80 A1H5U C34 H67 SING N N 81 A1H5U C17 H62 SING N N 82 A1H5U C45 H76 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H5U InChI InChI 1.06 "InChI=1S/C32H33ClF2N6O4/c1-6-24(42)39-14-18(5)40(15-17(39)4)30-19-13-20(33)27-25-21(34)7-8-22(35)29(25)45-12-11-44-23-9-10-36-26(16(2)3)28(23)41(31(19)37-27)32(43)38-30/h7-10,13,16-18H,6,11-12,14-15H2,1-5H3/t17-,18+/m1/s1" A1H5U InChIKey InChI 1.06 ZCLGGAMHRVYGDO-MSOLQXFVSA-N A1H5U SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1C[C@H](C)N(C[C@H]1C)C2=NC(=O)[N@@]3c4nc(c(Cl)cc24)c5c(F)ccc(F)c5OCCOc6ccnc(C(C)C)c36" A1H5U SMILES CACTVS 3.385 "CCC(=O)N1C[CH](C)N(C[CH]1C)C2=NC(=O)[N]3c4nc(c(Cl)cc24)c5c(F)ccc(F)c5OCCOc6ccnc(C(C)C)c36" A1H5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1C[C@@H](N(C[C@H]1C)C2=NC(=O)N3c4c(ccnc4C(C)C)OCCOc5c(ccc(c5-c6c(cc2c3n6)Cl)F)F)C" A1H5U SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC(N(CC1C)C2=NC(=O)N3c4c(ccnc4C(C)C)OCCOc5c(ccc(c5-c6c(cc2c3n6)Cl)F)F)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H5U "Create component" 2024-03-07 PDBE A1H5U "Modify name" 2024-03-31 PDBE A1H5U "Initial release" 2024-07-10 RCSB A1H5U "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H5U _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C43 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #