data_A1H5X # _chem_comp.id A1H5X _chem_comp.name "(2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-3-azanyl-2-oxidanyl-propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H24 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-11 _chem_comp.pdbx_modified_date 2024-11-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.396 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H5X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EMS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H5X C2 C1 C 0 1 N N N N N N -1.231 -22.668 2.984 -0.614 1.478 2.367 C2 A1H5X 1 A1H5X C3 C2 C 0 1 N N R N N N -2.648 -22.647 2.448 -1.075 0.352 1.439 C3 A1H5X 2 A1H5X C4 C3 C 0 1 N N S N N N -3.307 -21.265 2.490 -0.346 -0.943 1.806 C4 A1H5X 3 A1H5X C6 C4 C 0 1 N N R N N N -4.803 -21.364 2.233 -0.766 -2.050 0.835 C6 A1H5X 4 A1H5X C8 C5 C 0 1 N N S N N N -5.460 -22.403 3.141 -0.464 -1.599 -0.597 C8 A1H5X 5 A1H5X O1 O1 O 0 1 N N N N N N -0.368 -23.483 2.192 -1.378 2.656 2.101 O1 A1H5X 6 A1H5X C12 C6 C 0 1 Y N N N N N -5.185 -21.421 6.602 2.972 -0.547 -0.745 C12 A1H5X 7 A1H5X C13 C7 C 0 1 Y N N N N N -4.634 -21.168 7.944 4.126 0.373 -0.582 C13 A1H5X 8 A1H5X C14 C8 C 0 1 Y N N N N N -3.711 -22.051 8.506 5.407 -0.043 -0.937 C14 A1H5X 9 A1H5X C15 C9 C 0 1 Y N N N N N -3.198 -21.821 9.771 6.476 0.816 -0.783 C15 A1H5X 10 A1H5X C16 C10 C 0 1 Y N N N N N -3.599 -20.711 10.488 6.277 2.088 -0.276 C16 A1H5X 11 A1H5X C17 C11 C 0 1 Y N N N N N -4.513 -19.833 9.944 5.007 2.505 0.079 C17 A1H5X 12 A1H5X C18 C12 C 0 1 Y N N N N N -5.033 -20.057 8.681 3.930 1.656 -0.077 C18 A1H5X 13 A1H5X C19 C13 C 0 1 Y N N N N N -4.581 -21.922 5.479 1.667 -0.286 -0.444 C19 A1H5X 14 A1H5X C20 C14 C 0 1 N N S N N N -4.746 -23.740 2.971 -1.189 -0.279 -0.872 C20 A1H5X 15 A1H5X C22 C15 C 0 1 N N N N N N -4.323 -25.506 1.378 -3.379 0.628 -1.226 C22 A1H5X 16 A1H5X C23 C16 C 0 1 N N S N N N -4.399 -25.741 -0.117 -4.866 0.304 -1.070 C23 A1H5X 17 A1H5X C25 C17 C 0 1 N N N N N N -3.294 -24.986 -0.842 -5.701 1.436 -1.672 C25 A1H5X 18 A1H5X N10 N1 N 0 1 Y N N N N N -6.714 -21.501 5.043 1.807 -2.279 -1.215 N10 A1H5X 19 A1H5X N11 N2 N 0 1 Y N N N N N -6.495 -21.177 6.298 3.002 -1.803 -1.226 N11 A1H5X 20 A1H5X N26 N3 N 0 1 N N N N N N -3.039 -25.610 -2.164 -7.128 1.126 -1.523 N26 A1H5X 21 A1H5X N9 N4 N 0 1 Y N N N N N -5.545 -21.955 4.539 0.979 -1.408 -0.756 N9 A1H5X 22 A1H5X O21 O2 O 0 1 N N N N N N -4.972 -24.269 1.697 -2.600 -0.479 -0.769 O21 A1H5X 23 A1H5X O24 O3 O 0 1 N N N N N N -5.665 -25.300 -0.622 -5.181 0.167 0.317 O24 A1H5X 24 A1H5X O27 O4 O 0 1 N N N N N N -3.364 -23.601 3.248 -0.775 0.698 0.085 O27 A1H5X 25 A1H5X O5 O5 O 0 1 N N N N N N -2.734 -20.428 1.489 -0.688 -1.321 3.141 O5 A1H5X 26 A1H5X O7 O6 O 0 1 N N N N N N -5.442 -20.107 2.428 -0.036 -3.243 1.125 O7 A1H5X 27 A1H5X H2B H1 H 0 1 N N N N N N -1.246 -23.062 4.011 -0.761 1.176 3.404 H2B A1H5X 28 A1H5X H2A H2 H 0 1 N N N N N N -0.840 -21.640 2.991 0.442 1.683 2.194 H2A A1H5X 29 A1H5X H3 H3 H 0 1 N N N N N N -2.629 -22.987 1.402 -2.150 0.208 1.548 H3 A1H5X 30 A1H5X H4 H4 H 0 1 N N N N N N -3.146 -20.828 3.487 0.731 -0.787 1.737 H4 A1H5X 31 A1H5X H6 H5 H 0 1 N N N N N N -4.948 -21.686 1.191 -1.834 -2.241 0.941 H6 A1H5X 32 A1H5X H8 H6 H 0 1 N N N N N N -6.488 -22.541 2.775 -0.810 -2.359 -1.299 H8 A1H5X 33 A1H5X H1 H7 H 0 1 N N N N N N 0.508 -23.469 2.560 -1.139 3.413 2.655 H1 A1H5X 34 A1H5X H14 H8 H 0 1 N N N N N N -3.394 -22.921 7.950 5.563 -1.036 -1.333 H14 A1H5X 35 A1H5X H15 H9 H 0 1 N N N N N N -2.484 -22.510 10.197 7.470 0.495 -1.058 H15 A1H5X 36 A1H5X H16 H10 H 0 1 N N N N N N -3.197 -20.531 11.474 7.117 2.757 -0.157 H16 A1H5X 37 A1H5X H17 H11 H 0 1 N N N N N N -4.825 -18.966 10.507 4.858 3.499 0.474 H17 A1H5X 38 A1H5X H18 H12 H 0 1 N N N N N N -5.752 -19.366 8.265 2.938 1.985 0.196 H18 A1H5X 39 A1H5X H19 H13 H 0 1 N N N N N N -3.550 -22.226 5.370 1.264 0.630 -0.038 H19 A1H5X 40 A1H5X H20 H14 H 0 1 N N N N N N -5.177 -24.427 3.714 -0.943 0.068 -1.876 H20 A1H5X 41 A1H5X H22B H15 H 0 0 N N N N N N -4.825 -26.331 1.905 -3.157 0.820 -2.276 H22B A1H5X 42 A1H5X H22A H16 H 0 0 N N N N N N -3.269 -25.459 1.689 -3.136 1.512 -0.635 H22A A1H5X 43 A1H5X H23 H17 H 0 1 N N N N N N -4.275 -26.817 -0.311 -5.091 -0.628 -1.587 H23 A1H5X 44 A1H5X H25A H18 H 0 0 N N N N N N -2.374 -25.019 -0.240 -5.476 2.369 -1.155 H25A A1H5X 45 A1H5X H25B H19 H 0 0 N N N N N N -3.601 -23.940 -0.986 -5.461 1.541 -2.730 H25B A1H5X 46 A1H5X H26A H20 H 0 0 N N N N N N -2.312 -25.110 -2.635 -7.363 0.960 -0.555 H26A A1H5X 47 A1H5X H26B H21 H 0 0 N N N N N N -2.759 -26.561 -2.035 -7.701 1.859 -1.913 H26B A1H5X 48 A1H5X H24 H23 H 0 1 N N N N N N -6.363 -25.765 -0.176 -5.005 0.961 0.841 H24 A1H5X 49 A1H5X H5 H24 H 0 1 N N N N N N -1.798 -20.355 1.634 -0.454 -0.663 3.809 H5 A1H5X 50 A1H5X H7 H25 H 0 1 N N N N N N -6.373 -20.195 2.262 -0.175 -3.582 2.020 H7 A1H5X 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H5X N26 C25 SING N N 1 A1H5X C25 C23 SING N N 2 A1H5X O24 C23 SING N N 3 A1H5X C23 C22 SING N N 4 A1H5X C22 O21 SING N N 5 A1H5X O5 C4 SING N N 6 A1H5X O21 C20 SING N N 7 A1H5X O1 C2 SING N N 8 A1H5X C6 O7 SING N N 9 A1H5X C6 C4 SING N N 10 A1H5X C6 C8 SING N N 11 A1H5X C3 C4 SING N N 12 A1H5X C3 C2 SING N N 13 A1H5X C3 O27 SING N N 14 A1H5X C20 C8 SING N N 15 A1H5X C20 O27 SING N N 16 A1H5X C8 N9 SING N N 17 A1H5X N9 N10 SING Y N 18 A1H5X N9 C19 SING Y N 19 A1H5X N10 N11 DOUB Y N 20 A1H5X C19 C12 DOUB Y N 21 A1H5X N11 C12 SING Y N 22 A1H5X C12 C13 SING N N 23 A1H5X C13 C14 DOUB Y N 24 A1H5X C13 C18 SING Y N 25 A1H5X C14 C15 SING Y N 26 A1H5X C18 C17 DOUB Y N 27 A1H5X C15 C16 DOUB Y N 28 A1H5X C17 C16 SING Y N 29 A1H5X C2 H2B SING N N 30 A1H5X C2 H2A SING N N 31 A1H5X C3 H3 SING N N 32 A1H5X C4 H4 SING N N 33 A1H5X C6 H6 SING N N 34 A1H5X C8 H8 SING N N 35 A1H5X O1 H1 SING N N 36 A1H5X C14 H14 SING N N 37 A1H5X C15 H15 SING N N 38 A1H5X C16 H16 SING N N 39 A1H5X C17 H17 SING N N 40 A1H5X C18 H18 SING N N 41 A1H5X C19 H19 SING N N 42 A1H5X C20 H20 SING N N 43 A1H5X C22 H22B SING N N 44 A1H5X C22 H22A SING N N 45 A1H5X C23 H23 SING N N 46 A1H5X C25 H25A SING N N 47 A1H5X C25 H25B SING N N 48 A1H5X N26 H26A SING N N 49 A1H5X N26 H26B SING N N 50 A1H5X O24 H24 SING N N 51 A1H5X O5 H5 SING N N 52 A1H5X O7 H7 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H5X InChI InChI 1.06 "InChI=1S/C17H24N4O6/c18-6-11(23)9-26-17-14(16(25)15(24)13(8-22)27-17)21-7-12(19-20-21)10-4-2-1-3-5-10/h1-5,7,11,13-17,22-25H,6,8-9,18H2/t11-,13+,14-,15+,16+,17-/m0/s1" A1H5X InChIKey InChI 1.06 KSCFACOHPRFOGC-RLKGDUNQSA-N A1H5X SMILES_CANONICAL CACTVS 3.385 "NC[C@H](O)CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1n2cc(nn2)c3ccccc3" A1H5X SMILES CACTVS 3.385 "NC[CH](O)CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1n2cc(nn2)c3ccccc3" A1H5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(nn2)[C@H]3[C@H]([C@@H]([C@H](O[C@@H]3OC[C@H](CN)O)CO)O)O" A1H5X SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(nn2)C3C(C(C(OC3OCC(CN)O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id A1H5X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-3-azanyl-2-oxidanyl-propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H5X "Create component" 2024-03-11 PDBE A1H5X "Initial release" 2024-11-13 RCSB #