data_A1H6H # _chem_comp.id A1H6H _chem_comp.name "5-[[2-[(3-chloranyl-4-phenyl-phenyl)methylamino]-7-azaspiro[3.5]nonan-7-yl]sulfonyl]-1,3-dimethyl-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 Cl N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-20 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.126 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H6H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EPV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H6H C36 C1 C 0 1 Y N N N N N 33.857 -5.419 0.161 7.729 2.622 2.467 C36 A1H6H 1 A1H6H C35 C2 C 0 1 Y N N N N N 35.068 -4.840 0.514 6.799 1.759 1.925 C35 A1H6H 2 A1H6H C38 C3 C 0 1 Y N N N N N 34.902 -6.506 -1.694 9.257 2.107 0.691 C38 A1H6H 3 A1H6H C34 C4 C 0 1 Y N N N N N 36.224 -5.085 -0.236 7.100 1.057 0.759 C34 A1H6H 4 A1H6H C33 C5 C 0 1 Y N N N N N 37.493 -4.342 0.023 6.103 0.127 0.172 C33 A1H6H 5 A1H6H C32 C6 C 0 1 Y N N N N N 38.187 -3.871 -1.086 5.481 -0.828 0.973 C32 A1H6H 6 A1H6H C31 C7 C 0 1 Y N N N N N 39.329 -3.104 -0.941 4.555 -1.690 0.421 C31 A1H6H 7 A1H6H C24 C8 C 0 1 Y N N N N N 46.059 4.501 -6.025 -5.846 1.035 -0.094 C24 A1H6H 8 A1H6H C25 C9 C 0 1 Y N N N N N 46.665 4.120 -4.845 -5.319 -0.040 0.605 C25 A1H6H 9 A1H6H C14 C10 C 0 1 Y N N N N N 46.208 4.685 -3.666 -4.196 0.133 1.389 C14 A1H6H 10 A1H6H C15 C11 C 0 1 Y N N N N N 45.164 5.614 -3.651 -3.593 1.376 1.481 C15 A1H6H 11 A1H6H C16 C12 C 0 1 Y N N N N N 44.557 5.986 -4.842 -4.110 2.453 0.788 C16 A1H6H 12 A1H6H C11 C13 C 0 1 N N N N N N 44.780 3.379 -0.777 -1.013 -1.553 1.302 C11 A1H6H 13 A1H6H C4 C14 C 0 1 Y N N N N N 39.830 -2.784 0.309 4.243 -1.607 -0.924 C4 A1H6H 14 A1H6H C5 C15 C 0 1 N N N N N N 41.155 -2.086 0.447 3.231 -2.551 -1.520 C5 A1H6H 15 A1H6H C2 C16 C 0 1 Y N N N N N 38.013 -4.015 1.295 5.782 0.210 -1.183 C2 A1H6H 16 A1H6H CL1 CL1 CL 0 0 N N N N N N 37.366 -4.688 2.766 6.547 1.402 -2.187 CL1 A1H6H 17 A1H6H C3 C17 C 0 1 Y N N N N N 39.152 -3.242 1.431 4.857 -0.661 -1.724 C3 A1H6H 18 A1H6H N6 N1 N 0 1 N N N N N N 41.208 -0.798 -0.316 1.891 -1.957 -1.424 N6 A1H6H 19 A1H6H C7 C18 C 0 1 N N N N N N 42.595 -0.529 -0.839 0.876 -2.852 -1.996 C7 A1H6H 20 A1H6H C8 C19 C 0 1 N N N N N N 43.631 -0.252 0.213 -0.384 -2.119 -2.488 C8 A1H6H 21 A1H6H C9 C20 C 0 1 N N N N N N 44.142 0.945 -0.615 -0.947 -2.307 -1.074 C9 A1H6H 22 A1H6H C10 C21 C 0 1 N N N N N N 44.383 2.251 0.162 -0.596 -1.165 -0.122 C10 A1H6H 23 A1H6H N12 N2 N 0 1 N N N N N N 45.981 2.979 -1.538 -2.421 -1.969 1.286 N12 A1H6H 24 A1H6H S13 S1 S 0 1 N N N N N N 46.929 4.167 -2.152 -3.526 -1.234 2.277 S13 A1H6H 25 A1H6H C17 C22 C 0 1 Y N N N N N 45.018 5.419 -6.029 -5.238 2.289 -0.002 C17 A1H6H 26 A1H6H N18 N3 N 0 1 N N N N N N 44.691 5.650 -7.365 -5.980 3.155 -0.801 N18 A1H6H 27 A1H6H C19 C23 C 0 1 N N N N N N 43.649 6.559 -7.840 -5.705 4.580 -1.005 C19 A1H6H 28 A1H6H C20 C24 C 0 1 N N N N N N 45.505 4.898 -8.192 -6.992 2.461 -1.354 C20 A1H6H 29 A1H6H N21 N4 N 0 1 N N N N N N 46.342 4.196 -7.361 -6.935 1.178 -0.951 N21 A1H6H 30 A1H6H C22 C25 C 0 1 N N N N N N 47.383 3.284 -7.836 -7.865 0.115 -1.339 C22 A1H6H 31 A1H6H O23 O1 O 0 1 N N N N N N 45.497 4.866 -9.411 -7.828 2.922 -2.108 O23 A1H6H 32 A1H6H O26 O2 O 0 1 N N N N N N 46.827 5.271 -1.253 -2.790 -0.686 3.362 O26 A1H6H 33 A1H6H O27 O3 O 0 1 N N N N N N 48.204 3.580 -2.430 -4.590 -2.160 2.449 O27 A1H6H 34 A1H6H C28 C26 C 0 1 N N N N N N 45.731 1.788 -2.372 -2.836 -3.046 0.377 C28 A1H6H 35 A1H6H C29 C27 C 0 1 N N N N N N 45.388 0.626 -1.454 -2.431 -2.668 -1.052 C29 A1H6H 36 A1H6H C30 C28 C 0 1 N N N N N N 42.806 0.911 -1.379 -0.020 -3.522 -0.940 C30 A1H6H 37 A1H6H C37 C29 C 0 1 Y N N N N N 33.773 -6.251 -0.942 8.956 2.796 1.852 C37 A1H6H 38 A1H6H C39 C30 C 0 1 Y N N N N N 36.118 -5.933 -1.348 8.339 1.232 0.147 C39 A1H6H 39 A1H6H H1 H1 H 0 1 N N N N N N 32.975 -5.219 0.751 7.497 3.167 3.370 H1 A1H6H 40 A1H6H H2 H2 H 0 1 N N N N N N 35.119 -4.193 1.377 5.840 1.627 2.404 H2 A1H6H 41 A1H6H H3 H3 H 0 1 N N N N N N 34.839 -7.154 -2.555 10.218 2.243 0.218 H3 A1H6H 42 A1H6H H4 H4 H 0 1 N N N N N N 37.829 -4.108 -2.077 5.723 -0.895 2.023 H4 A1H6H 43 A1H6H H5 H5 H 0 1 N N N N N N 39.841 -2.747 -1.822 4.073 -2.431 1.041 H5 A1H6H 44 A1H6H H6 H6 H 0 1 N N N N N N 47.472 3.402 -4.841 -5.787 -1.012 0.536 H6 A1H6H 45 A1H6H H7 H7 H 0 1 N N N N N N 44.831 6.041 -2.716 -2.715 1.504 2.096 H7 A1H6H 46 A1H6H H8 H8 H 0 1 N N N N N N 43.746 6.699 -4.849 -3.638 3.422 0.863 H8 A1H6H 47 A1H6H H9 H9 H 0 1 N N N N N N 45.000 4.284 -0.192 -0.392 -2.377 1.653 H9 A1H6H 48 A1H6H H10 H10 H 0 1 N N N N N N 43.954 3.585 -1.474 -0.890 -0.696 1.965 H10 A1H6H 49 A1H6H H11 H11 H 0 1 N N N N N N 41.945 -2.752 0.070 3.474 -2.731 -2.567 H11 A1H6H 50 A1H6H H12 H12 H 0 1 N N N N N N 41.332 -1.873 1.512 3.250 -3.495 -0.975 H12 A1H6H 51 A1H6H H13 H13 H 0 1 N N N N N N 39.517 -2.993 2.417 4.610 -0.600 -2.774 H13 A1H6H 52 A1H6H H14 H14 H 0 1 N N N N N N 40.937 -0.049 0.289 1.865 -1.051 -1.866 H14 A1H6H 53 A1H6H H16 H16 H 0 1 N N N N N N 42.924 -1.288 -1.564 1.289 -3.548 -2.726 H16 A1H6H 54 A1H6H H17 H17 H 0 1 N N N N N N 43.215 0.024 1.193 -0.207 -1.076 -2.753 H17 A1H6H 55 A1H6H H18 H18 H 0 1 N N N N N N 44.369 -1.058 0.342 -0.934 -2.663 -3.256 H18 A1H6H 56 A1H6H H19 H19 H 0 1 N N N N N N 45.189 2.091 0.893 -1.128 -0.263 -0.424 H19 A1H6H 57 A1H6H H20 H20 H 0 1 N N N N N N 43.460 2.531 0.690 0.478 -0.984 -0.150 H20 A1H6H 58 A1H6H H21 H21 H 0 1 N N N N N N 43.152 7.030 -6.979 -5.040 4.703 -1.860 H21 A1H6H 59 A1H6H H22 H22 H 0 1 N N N N N N 44.102 7.337 -8.473 -6.640 5.107 -1.195 H22 A1H6H 60 A1H6H H23 H23 H 0 1 N N N N N N 42.909 5.994 -8.426 -5.231 4.990 -0.114 H23 A1H6H 61 A1H6H H24 H24 H 0 1 N N N N N N 47.911 2.849 -6.975 -8.620 0.521 -2.012 H24 A1H6H 62 A1H6H H25 H25 H 0 1 N N N N N N 46.923 2.479 -8.428 -7.317 -0.680 -1.845 H25 A1H6H 63 A1H6H H26 H26 H 0 1 N N N N N N 48.097 3.838 -8.463 -8.349 -0.288 -0.449 H26 A1H6H 64 A1H6H H27 H27 H 0 1 N N N N N N 44.891 1.982 -3.056 -2.343 -3.975 0.663 H27 A1H6H 65 A1H6H H28 H28 H 0 1 N N N N N N 46.631 1.547 -2.956 -3.917 -3.172 0.430 H28 A1H6H 66 A1H6H H29 H29 H 0 1 N N N N N N 45.194 -0.269 -2.063 -3.019 -1.812 -1.383 H29 A1H6H 67 A1H6H H30 H30 H 0 1 N N N N N N 46.237 0.435 -0.781 -2.610 -3.513 -1.717 H30 A1H6H 68 A1H6H H31 H31 H 0 1 N N N N N N 42.903 0.979 -2.473 -0.471 -4.455 -1.278 H31 A1H6H 69 A1H6H H32 H32 H 0 1 N N N N N N 42.062 1.643 -1.031 0.449 -3.608 0.040 H32 A1H6H 70 A1H6H H33 H33 H 0 1 N N N N N N 32.828 -6.699 -1.213 9.677 3.480 2.274 H33 A1H6H 71 A1H6H H34 H34 H 0 1 N N N N N N 36.994 -6.143 -1.943 8.575 0.694 -0.759 H34 A1H6H 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H6H O23 C20 DOUB N N 1 A1H6H C20 N18 SING N N 2 A1H6H C20 N21 SING N N 3 A1H6H C19 N18 SING N N 4 A1H6H C22 N21 SING N N 5 A1H6H N18 C17 SING N N 6 A1H6H N21 C24 SING N N 7 A1H6H C17 C24 DOUB Y N 8 A1H6H C17 C16 SING Y N 9 A1H6H C24 C25 SING Y N 10 A1H6H C25 C14 DOUB Y N 11 A1H6H C16 C15 DOUB Y N 12 A1H6H C14 C15 SING Y N 13 A1H6H C14 S13 SING N N 14 A1H6H O27 S13 DOUB N N 15 A1H6H C28 N12 SING N N 16 A1H6H C28 C29 SING N N 17 A1H6H S13 N12 SING N N 18 A1H6H S13 O26 DOUB N N 19 A1H6H C38 C39 DOUB Y N 20 A1H6H C38 C37 SING Y N 21 A1H6H N12 C11 SING N N 22 A1H6H C29 C9 SING N N 23 A1H6H C30 C7 SING N N 24 A1H6H C30 C9 SING N N 25 A1H6H C39 C34 SING Y N 26 A1H6H C32 C31 DOUB Y N 27 A1H6H C32 C33 SING Y N 28 A1H6H C37 C36 DOUB Y N 29 A1H6H C31 C4 SING Y N 30 A1H6H C7 N6 SING N N 31 A1H6H C7 C8 SING N N 32 A1H6H C11 C10 SING N N 33 A1H6H C9 C10 SING N N 34 A1H6H C9 C8 SING N N 35 A1H6H N6 C5 SING N N 36 A1H6H C34 C33 SING N N 37 A1H6H C34 C35 DOUB Y N 38 A1H6H C33 C2 DOUB Y N 39 A1H6H C36 C35 SING Y N 40 A1H6H C4 C5 SING N N 41 A1H6H C4 C3 DOUB Y N 42 A1H6H C2 C3 SING Y N 43 A1H6H C2 CL1 SING N N 44 A1H6H C36 H1 SING N N 45 A1H6H C35 H2 SING N N 46 A1H6H C38 H3 SING N N 47 A1H6H C32 H4 SING N N 48 A1H6H C31 H5 SING N N 49 A1H6H C25 H6 SING N N 50 A1H6H C15 H7 SING N N 51 A1H6H C16 H8 SING N N 52 A1H6H C11 H9 SING N N 53 A1H6H C11 H10 SING N N 54 A1H6H C5 H11 SING N N 55 A1H6H C5 H12 SING N N 56 A1H6H C3 H13 SING N N 57 A1H6H N6 H14 SING N N 58 A1H6H C7 H16 SING N N 59 A1H6H C8 H17 SING N N 60 A1H6H C8 H18 SING N N 61 A1H6H C10 H19 SING N N 62 A1H6H C10 H20 SING N N 63 A1H6H C19 H21 SING N N 64 A1H6H C19 H22 SING N N 65 A1H6H C19 H23 SING N N 66 A1H6H C22 H24 SING N N 67 A1H6H C22 H25 SING N N 68 A1H6H C22 H26 SING N N 69 A1H6H C28 H27 SING N N 70 A1H6H C28 H28 SING N N 71 A1H6H C29 H29 SING N N 72 A1H6H C29 H30 SING N N 73 A1H6H C30 H31 SING N N 74 A1H6H C30 H32 SING N N 75 A1H6H C37 H33 SING N N 76 A1H6H C39 H34 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H6H InChI InChI 1.06 "InChI=1S/C30H33ClN4O3S/c1-33-27-11-9-24(17-28(27)34(2)29(33)36)39(37,38)35-14-12-30(13-15-35)18-23(19-30)32-20-21-8-10-25(26(31)16-21)22-6-4-3-5-7-22/h3-11,16-17,23,32H,12-15,18-20H2,1-2H3" A1H6H InChIKey InChI 1.06 VXLVVZOFGXUTDP-UHFFFAOYSA-N A1H6H SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2cc(ccc12)[S](=O)(=O)N3CCC4(CC3)CC(C4)NCc5ccc(c(Cl)c5)c6ccccc6" A1H6H SMILES CACTVS 3.385 "CN1C(=O)N(C)c2cc(ccc12)[S](=O)(=O)N3CCC4(CC3)CC(C4)NCc5ccc(c(Cl)c5)c6ccccc6" A1H6H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2N(C1=O)C)S(=O)(=O)N3CCC4(CC3)CC(C4)NCc5ccc(c(c5)Cl)c6ccccc6" A1H6H SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2N(C1=O)C)S(=O)(=O)N3CCC4(CC3)CC(C4)NCc5ccc(c(c5)Cl)c6ccccc6" # _pdbx_chem_comp_identifier.comp_id A1H6H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[2-[(3-chloranyl-4-phenyl-phenyl)methylamino]-7-azaspiro[3.5]nonan-7-yl]sulfonyl]-1,3-dimethyl-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H6H "Create component" 2024-03-20 PDBE A1H6H "Initial release" 2024-05-01 RCSB #