data_A1H6M # _chem_comp.id A1H6M _chem_comp.name 11,20-Ethanoretinal _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2E)-2-[3-[(1E,3E)-2-methyl-4-(2,6,6-trimethylcyclohexen-1-yl)buta-1,3-dienyl]cyclohex-2-en-1-ylidene]ethanal; Retinal 6.11" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-25 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H6M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EPP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H6M C10 C1 C 0 1 N N N N N N 127.097 121.553 94.502 2.427 1.217 -0.275 C10 A1H6M 1 A1H6M C12 C2 C 0 1 N N N N N N 129.253 120.416 94.555 4.380 -0.198 -0.133 C12 A1H6M 2 A1H6M C14 C3 C 0 1 N N N N N N 127.420 119.567 95.971 4.679 2.247 -0.403 C14 A1H6M 3 A1H6M C15 C4 C 0 1 N N N N N N 126.529 120.732 95.623 3.239 2.434 0.084 C15 A1H6M 4 A1H6M C16 C5 C 0 1 N N N N N N 130.504 120.235 94.090 4.933 -1.457 -0.234 C16 A1H6M 5 A1H6M C19 C6 C 0 1 N N N N N N 122.830 126.625 92.866 -4.103 1.073 0.176 C19 A1H6M 6 A1H6M C20 C7 C 0 1 N N N N N N 122.718 125.500 91.878 -3.329 2.333 0.466 C20 A1H6M 7 A1H6M C21 C8 C 0 1 N N N N N N 122.280 127.934 92.363 -5.552 1.202 -0.196 C21 A1H6M 8 A1H6M C22 C9 C 0 1 N N N N N N 122.420 129.097 93.347 -6.042 -0.087 -0.860 C22 A1H6M 9 A1H6M C23 C10 C 0 1 N N N N N N 122.270 128.598 94.772 -5.635 -1.274 0.022 C23 A1H6M 10 A1H6M C1 C11 C 0 1 N N N N N N 123.463 127.148 96.492 -3.682 -1.904 -1.401 C1 A1H6M 11 A1H6M C11 C12 C 0 1 N N N N N N 128.224 121.127 93.881 3.015 -0.021 -0.366 C11 A1H6M 12 A1H6M C13 C13 C 0 1 N N N N N N 128.861 120.001 95.941 5.255 0.975 0.228 C13 A1H6M 13 A1H6M C17 C14 C 0 1 N N N N N N 131.567 119.725 94.921 6.299 -1.641 -0.001 C17 A1H6M 14 A1H6M C2 C15 C 0 1 N N N N N N 123.442 127.669 95.056 -4.112 -1.410 -0.018 C2 A1H6M 15 A1H6M C3 C16 C 0 1 N N N N N N 124.704 128.484 94.787 -3.665 -2.419 1.043 C3 A1H6M 16 A1H6M C4 C17 C 0 1 N N N N N N 123.357 126.507 94.094 -3.467 -0.083 0.259 C4 A1H6M 17 A1H6M C5 C18 C 0 1 N N N N N N 123.901 125.327 94.590 -2.097 -0.068 0.624 C5 A1H6M 18 A1H6M C6 C19 C 0 1 N N N N N N 125.010 124.724 94.186 -1.208 0.659 -0.103 C6 A1H6M 19 A1H6M C7 C20 C 0 1 N N N N N N 125.641 123.599 94.847 0.160 0.619 0.216 C7 A1H6M 20 A1H6M C8 C21 C 0 1 N N N N N N 125.209 123.302 96.253 0.641 -0.229 1.365 C8 A1H6M 21 A1H6M C9 C22 C 0 1 N N N N N N 126.547 122.852 94.183 1.053 1.349 -0.515 C9 A1H6M 22 A1H6M H2 H2 H 0 1 N N N N N N 127.169 119.203 96.978 4.687 2.152 -1.489 H2 A1H6M 23 A1H6M H3 H3 H 0 1 N N N N N N 127.267 118.759 95.241 5.279 3.107 -0.107 H3 A1H6M 24 A1H6M H4 H4 H 0 1 N N N N N N 126.416 121.371 96.511 2.806 3.313 -0.392 H4 A1H6M 25 A1H6M H5 H5 H 0 1 N N N N N N 125.544 120.348 95.320 3.235 2.566 1.166 H5 A1H6M 26 A1H6M H6 H6 H 0 1 N N N N N N 130.718 120.480 93.060 4.311 -2.301 -0.492 H6 A1H6M 27 A1H6M H8 H8 H 0 1 N N N N N N 123.139 124.583 92.316 -2.893 2.712 -0.458 H8 A1H6M 28 A1H6M H9 H9 H 0 1 N N N N N N 121.659 125.335 91.629 -4.000 3.083 0.886 H9 A1H6M 29 A1H6M H10 H10 H 0 1 N N N N N N 123.274 125.758 90.964 -2.535 2.116 1.180 H10 A1H6M 30 A1H6M H11 H11 H 0 1 N N N N N N 122.814 128.199 91.438 -6.140 1.392 0.702 H11 A1H6M 31 A1H6M H12 H12 H 0 1 N N N N N N 121.211 127.796 92.143 -5.674 2.034 -0.889 H12 A1H6M 32 A1H6M H13 H13 H 0 1 N N N N N N 123.411 129.558 93.226 -7.127 -0.059 -0.958 H13 A1H6M 33 A1H6M H14 H14 H 0 1 N N N N N N 121.640 129.844 93.140 -5.584 -0.189 -1.844 H14 A1H6M 34 A1H6M H15 H15 H 0 1 N N N N N N 122.286 129.447 95.471 -5.960 -1.097 1.047 H15 A1H6M 35 A1H6M H16 H16 H 0 1 N N N N N N 121.322 128.051 94.881 -6.094 -2.187 -0.358 H16 A1H6M 36 A1H6M H17 H17 H 0 1 N N N N N N 123.525 127.996 97.190 -4.004 -1.189 -2.158 H17 A1H6M 37 A1H6M H18 H18 H 0 1 N N N N N N 122.543 126.578 96.689 -2.597 -2.002 -1.431 H18 A1H6M 38 A1H6M H19 H19 H 0 1 N N N N N N 124.336 126.494 96.632 -4.140 -2.874 -1.598 H19 A1H6M 39 A1H6M H20 H20 H 0 1 N N N N N N 128.345 121.337 92.829 2.408 -0.877 -0.623 H20 A1H6M 40 A1H6M H21 H21 H 0 1 N N N N N N 129.498 119.164 96.263 5.284 1.087 1.311 H21 A1H6M 41 A1H6M H22 H22 H 0 1 N N N N N N 128.998 120.851 96.626 6.264 0.806 -0.149 H22 A1H6M 42 A1H6M H23 H23 H 0 1 N N N N N N 132.546 120.168 95.026 6.922 -0.797 0.257 H23 A1H6M 43 A1H6M O1 O1 O 0 1 N Y N N N N 131.231 118.838 95.417 6.787 -2.752 -0.090 O1 A1H6M 44 A1H6M H26 H26 H 0 1 N N N N N N 124.755 129.326 95.493 -4.071 -3.402 0.803 H26 A1H6M 45 A1H6M H27 H27 H 0 1 N N N N N N 125.589 127.843 94.917 -2.576 -2.470 1.060 H27 A1H6M 46 A1H6M H28 H28 H 0 1 N N N N N N 124.679 128.870 93.757 -4.029 -2.104 2.020 H28 A1H6M 47 A1H6M H29 H29 H 0 1 N N N N N N 123.360 124.849 95.393 -1.760 -0.634 1.480 H29 A1H6M 48 A1H6M H30 H30 H 0 1 N N N N N N 125.482 125.102 93.291 -1.553 1.266 -0.927 H30 A1H6M 49 A1H6M H31 H31 H 0 1 N N N N N N 124.467 124.048 96.574 0.906 -1.221 0.998 H31 A1H6M 50 A1H6M H32 H32 H 0 1 N N N N N N 124.762 122.298 96.295 1.516 0.236 1.819 H32 A1H6M 51 A1H6M H33 H33 H 0 1 N N N N N N 126.082 123.343 96.921 -0.151 -0.317 2.109 H33 A1H6M 52 A1H6M H34 H34 H 0 1 N N N N N N 126.920 123.293 93.270 0.700 2.028 -1.277 H34 A1H6M 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H6M C20 C19 SING N N 1 A1H6M C21 C19 SING N N 2 A1H6M C21 C22 SING N N 3 A1H6M C19 C4 DOUB N N 4 A1H6M C22 C23 SING N N 5 A1H6M C11 C10 DOUB N N 6 A1H6M C11 C12 SING N N 7 A1H6M C16 C12 DOUB N E 8 A1H6M C16 C17 SING N N 9 A1H6M C4 C5 SING N N 10 A1H6M C4 C2 SING N N 11 A1H6M C9 C10 SING N N 12 A1H6M C9 C7 DOUB N E 13 A1H6M C6 C5 DOUB N E 14 A1H6M C6 C7 SING N N 15 A1H6M C10 C15 SING N N 16 A1H6M C12 C13 SING N N 17 A1H6M C23 C2 SING N N 18 A1H6M C3 C2 SING N N 19 A1H6M C7 C8 SING N N 20 A1H6M C2 C1 SING N N 21 A1H6M C15 C14 SING N N 22 A1H6M C13 C14 SING N N 23 A1H6M C14 H2 SING N N 24 A1H6M C14 H3 SING N N 25 A1H6M C15 H4 SING N N 26 A1H6M C15 H5 SING N N 27 A1H6M C16 H6 SING N N 28 A1H6M C20 H8 SING N N 29 A1H6M C20 H9 SING N N 30 A1H6M C20 H10 SING N N 31 A1H6M C21 H11 SING N N 32 A1H6M C21 H12 SING N N 33 A1H6M C22 H13 SING N N 34 A1H6M C22 H14 SING N N 35 A1H6M C23 H15 SING N N 36 A1H6M C23 H16 SING N N 37 A1H6M C1 H17 SING N N 38 A1H6M C1 H18 SING N N 39 A1H6M C1 H19 SING N N 40 A1H6M C11 H20 SING N N 41 A1H6M C13 H21 SING N N 42 A1H6M C13 H22 SING N N 43 A1H6M C17 H23 SING N N 44 A1H6M C17 O1 DOUB N N 45 A1H6M C3 H26 SING N N 46 A1H6M C3 H27 SING N N 47 A1H6M C3 H28 SING N N 48 A1H6M C5 H29 SING N N 49 A1H6M C6 H30 SING N N 50 A1H6M C8 H31 SING N N 51 A1H6M C8 H32 SING N N 52 A1H6M C8 H33 SING N N 53 A1H6M C9 H34 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H6M InChI InChI 1.06 "InChI=1S/C22H30O/c1-17(15-20-9-5-8-19(16-20)12-14-23)10-11-21-18(2)7-6-13-22(21,3)4/h10-12,14-16H,5-9,13H2,1-4H3/b11-10+,17-15+,19-12+" A1H6M InChIKey InChI 1.06 FOYUFPJPFUUNOX-ZRTTZBFNSA-N A1H6M SMILES_CANONICAL CACTVS 3.385 "CC(\C=C\C1=C(C)CCCC1(C)C)=C/C2=C/C(CCC2)=C/C=O" A1H6M SMILES CACTVS 3.385 "CC(C=CC1=C(C)CCCC1(C)C)=CC2=CC(CCC2)=CC=O" A1H6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C2=C/C(=C/C=O)/CCC2)/C" A1H6M SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)C=CC(=CC2=CC(=CC=O)CCC2)C" # _pdbx_chem_comp_identifier.comp_id A1H6M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{E})-2-[3-[(1~{E},3~{E})-2-methyl-4-(2,6,6-trimethylcyclohexen-1-yl)buta-1,3-dienyl]cyclohex-2-en-1-ylidene]ethanal" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H6M "Create component" 2024-03-25 PDBE A1H6M "Modify leaving atom flag" 2024-03-25 PDBE A1H6M "Modify PCM" 2024-09-27 PDBE A1H6M "Initial release" 2024-10-23 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1H6M "(2E)-2-[3-[(1E,3E)-2-methyl-4-(2,6,6-trimethylcyclohexen-1-yl)buta-1,3-dienyl]cyclohex-2-en-1-ylidene]ethanal" PDB ? 2 A1H6M "Retinal 6.11" PUBCHEM ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H6M _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #