data_A1H6W # _chem_comp.id A1H6W _chem_comp.name Puerarin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Daidzein-8-C-glucoside; Kakonein; 8-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-3-(4-hydroxyphenyl)-7-oxidanyl-chromen-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-26 _chem_comp.pdbx_modified_date 2024-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H6W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EQG _chem_comp.pdbx_subcomponent_list "ZF1 GLC" _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H6W O29 O7 O 0 1 N N N N N N 237.787 211.728 242.571 2.944 2.316 -1.046 O1 ZF1 1 A1H6W C16 C14 C 0 1 Y N N N N N 237.555 213.004 242.957 1.623 2.119 -0.801 C1 ZF1 2 A1H6W C15 C13 C 0 1 Y N N N N N 237.195 213.259 244.275 0.706 3.118 -1.119 C2 ZF1 3 A1H6W C14 C12 C 0 1 Y N N N N N 236.991 214.555 244.709 -0.627 2.930 -0.882 C3 ZF1 4 A1H6W C11 C10 C 0 1 Y N N N N N 237.134 215.614 243.815 -1.066 1.732 -0.319 C4 ZF1 5 A1H6W C10 C6 C 0 1 Y N N N N N 237.510 215.331 242.505 -0.149 0.719 0.013 C5 ZF1 6 A1H6W C17 C15 C 0 1 Y N N N N N 237.680 214.042 242.028 1.201 0.924 -0.244 C6 ZF1 7 A1H6W O9 O9 O 0 1 N N N N N N 237.750 216.339 241.604 -0.571 -0.430 0.573 O2 ZF1 8 A1H6W C8 C9 C 0 1 N N N N N N 237.576 217.614 241.998 -1.857 -0.781 0.551 C7 ZF1 9 A1H6W C7 C8 C 0 1 N N N N N N 237.198 218.017 243.221 -2.859 0.091 0.265 C8 ZF1 10 A1H6W C12 C11 C 0 1 N N N N N N 236.919 217.006 244.238 -2.496 1.485 -0.055 C9 ZF1 11 A1H6W O13 O1 O 0 1 N N N N N N 236.465 217.282 245.336 -3.326 2.377 -0.098 O3 ZF1 12 A1H6W C6 C5 C 0 1 Y N N N N N 237.068 219.466 243.489 -4.276 -0.346 0.273 C10 ZF1 13 A1H6W C1 C7 C 0 1 Y N N N N N 235.944 219.969 244.131 -4.872 -0.762 1.463 C11 ZF1 14 A1H6W C2 C1 C 0 1 Y N N N N N 235.720 221.331 244.204 -6.190 -1.168 1.467 C12 ZF1 15 A1H6W C3 C2 C 0 1 Y N N N N N 236.625 222.211 243.634 -6.923 -1.163 0.289 C13 ZF1 16 A1H6W O30 O8 O 0 1 N N N N N N 236.382 223.545 243.641 -8.222 -1.563 0.296 O4 ZF1 17 A1H6W C4 C3 C 0 1 Y N N N N N 237.753 221.723 242.996 -6.333 -0.749 -0.898 C14 ZF1 18 A1H6W C5 C4 C 0 1 Y N N N N N 237.971 220.360 242.927 -5.016 -0.337 -0.908 C15 ZF1 19 A1H6W C18 C16 C 0 1 N N S N N N 237.766 213.898 240.525 2.205 -0.148 0.094 C1 GLC 20 A1H6W C19 C17 C 0 1 N N R N N N 239.063 213.425 239.890 2.663 -0.843 -1.191 C2 GLC 21 A1H6W C20 C18 C 0 1 N N R N N N 238.903 213.682 238.401 3.727 -1.889 -0.846 C3 GLC 22 A1H6W C21 C19 C 0 1 N N S N N N 237.680 212.945 237.873 4.884 -1.202 -0.114 C4 GLC 23 A1H6W C22 C20 C 0 1 N N R N N N 236.447 213.303 238.699 4.340 -0.494 1.130 C5 GLC 24 A1H6W C24 C21 C 0 1 N N N N N N 235.220 212.508 238.326 5.480 0.245 1.835 C6 GLC 25 A1H6W O28 O6 O 0 1 N N N N N N 240.166 214.156 240.409 1.546 -1.484 -1.811 O2 GLC 26 A1H6W O27 O5 O 0 1 N N N N N N 240.067 213.291 237.684 4.211 -2.493 -2.048 O3 GLC 27 A1H6W O26 O4 O 0 1 N N N N N N 237.454 213.317 236.520 5.849 -2.181 0.277 O4 GLC 28 A1H6W O23 O2 O 0 1 N N N N N N 236.710 213.035 240.082 3.333 0.443 0.742 O5 GLC 29 A1H6W O25 O3 O 0 1 N N N N N N 234.041 213.301 238.355 4.998 0.809 3.057 O6 GLC 30 A1H6W H19 H19 H 0 1 N N N N N N 237.662 211.145 243.311 3.424 2.720 -0.310 H1O ZF1 31 A1H6W H7 H7 H 0 1 N N N N N N 237.074 212.438 244.966 1.049 4.045 -1.554 H21 ZF1 32 A1H6W H6 H6 H 0 1 N N N N N N 236.722 214.746 245.737 -1.336 3.705 -1.129 H31 ZF1 33 A1H6W H5 H5 H 0 1 N N N N N N 237.757 218.384 241.262 -2.114 -1.806 0.771 H71 ZF1 34 A1H6W H4 H4 H 0 1 N N N N N N 235.236 219.287 244.579 -4.302 -0.767 2.380 H111 ZF1 35 A1H6W H1 H1 H 0 1 N N N N N N 234.841 221.708 244.705 -6.652 -1.490 2.388 H121 ZF1 36 A1H6W H20 H20 H 0 1 N N N N N N 235.577 223.718 244.115 -8.853 -0.849 0.460 H4O ZF1 37 A1H6W H2 H2 H 0 1 N N N N N N 238.462 222.407 242.553 -6.906 -0.746 -1.813 H141 ZF1 38 A1H6W H3 H3 H 0 1 N N N N N N 238.854 219.985 242.430 -4.558 -0.015 -1.831 H151 ZF1 39 A1H6W H8 H8 H 0 1 N N N N N N 237.567 214.896 240.108 1.746 -0.880 0.759 H12 GLC 40 A1H6W H9 H9 H 0 1 N N N N N N 239.187 212.346 240.066 3.084 -0.105 -1.874 H2 GLC 41 A1H6W H10 H10 H 0 1 N N N N N N 238.736 214.760 238.259 3.291 -2.654 -0.204 H3 GLC 42 A1H6W H11 H11 H 0 1 N N N N N N 237.856 211.862 237.947 5.351 -0.472 -0.774 H4 GLC 43 A1H6W H12 H12 H 0 1 N N N N N N 236.232 214.373 238.561 3.909 -1.230 1.809 H5 GLC 44 A1H6W H13 H13 H 0 1 N N N N N N 235.106 211.677 239.037 6.287 -0.455 2.051 H61 GLC 45 A1H6W H14 H14 H 0 1 N N N N N N 235.353 212.106 237.311 5.852 1.040 1.189 H62 GLC 46 A1H6W H18 H18 H 0 1 N N N N N N 240.251 213.984 241.339 1.763 -1.945 -2.633 HO2 GLC 47 A1H6W H17 H17 H 0 1 N N N N N N 240.821 213.758 238.024 4.889 -3.167 -1.904 HO3 GLC 48 A1H6W H16 H16 H 0 1 N N N N N N 236.691 212.858 236.188 6.232 -2.672 -0.462 HO4 GLC 49 A1H6W H15 H15 H 0 1 N N N N N N 233.293 212.766 238.115 5.669 1.293 3.558 HO6 GLC 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H6W O26 C21 SING N N 1 A1H6W O27 C20 SING N N 2 A1H6W C21 C20 SING N N 3 A1H6W C21 C22 SING N N 4 A1H6W C24 O25 SING N N 5 A1H6W C24 C22 SING N N 6 A1H6W C20 C19 SING N N 7 A1H6W C22 O23 SING N N 8 A1H6W C19 O28 SING N N 9 A1H6W C19 C18 SING N N 10 A1H6W O23 C18 SING N N 11 A1H6W C18 C17 SING N N 12 A1H6W O9 C8 SING N N 13 A1H6W O9 C10 SING N N 14 A1H6W C8 C7 DOUB N N 15 A1H6W C17 C10 DOUB Y N 16 A1H6W C17 C16 SING Y N 17 A1H6W C10 C11 SING Y N 18 A1H6W O29 C16 SING N N 19 A1H6W C5 C4 DOUB Y N 20 A1H6W C5 C6 SING Y N 21 A1H6W C16 C15 DOUB Y N 22 A1H6W C4 C3 SING Y N 23 A1H6W C7 C6 SING N N 24 A1H6W C7 C12 SING N N 25 A1H6W C6 C1 DOUB Y N 26 A1H6W C3 O30 SING N N 27 A1H6W C3 C2 DOUB Y N 28 A1H6W C11 C12 SING N N 29 A1H6W C11 C14 DOUB Y N 30 A1H6W C1 C2 SING Y N 31 A1H6W C12 O13 DOUB N N 32 A1H6W C15 C14 SING Y N 33 A1H6W C2 H1 SING N N 34 A1H6W C4 H2 SING N N 35 A1H6W C5 H3 SING N N 36 A1H6W C1 H4 SING N N 37 A1H6W C8 H5 SING N N 38 A1H6W C14 H6 SING N N 39 A1H6W C15 H7 SING N N 40 A1H6W C18 H8 SING N N 41 A1H6W C19 H9 SING N N 42 A1H6W C20 H10 SING N N 43 A1H6W C21 H11 SING N N 44 A1H6W C22 H12 SING N N 45 A1H6W C24 H13 SING N N 46 A1H6W C24 H14 SING N N 47 A1H6W O25 H15 SING N N 48 A1H6W O26 H16 SING N N 49 A1H6W O27 H17 SING N N 50 A1H6W O28 H18 SING N N 51 A1H6W O29 H19 SING N N 52 A1H6W O30 H20 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H6W InChI InChI 1.06 "InChI=1S/C21H20O9/c22-7-14-17(26)18(27)19(28)21(30-14)15-13(24)6-5-11-16(25)12(8-29-20(11)15)9-1-3-10(23)4-2-9/h1-6,8,14,17-19,21-24,26-28H,7H2/t14-,17-,18+,19-,21+/m1/s1" A1H6W InChIKey InChI 1.06 HKEAFJYKMMKDOR-VPRICQMDSA-N A1H6W SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2c(O)ccc3C(=O)C(=COc23)c4ccc(O)cc4" A1H6W SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2c(O)ccc3C(=O)C(=COc23)c4ccc(O)cc4" A1H6W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2=COc3c(ccc(c3[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)C2=O)O" A1H6W SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C2=COc3c(ccc(c3C4C(C(C(C(O4)CO)O)O)O)O)C2=O)O" # _pdbx_chem_comp_identifier.comp_id A1H6W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-3-(4-hydroxyphenyl)-7-oxidanyl-chromen-4-one" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1H6W Daidzein-8-C-glucoside PUBCHEM ? 2 A1H6W Kakonein PUBCHEM ? 3 A1H6W "8-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-3-(4-hydroxyphenyl)-7-oxidanyl-chromen-4-one" PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H6W "Create component" 2024-03-26 PDBE A1H6W "Initial release" 2024-09-18 RCSB #