data_A1H72 # _chem_comp.id A1H72 _chem_comp.name "1,4b,25-trihydroxyvitamin D3" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H44 O4" _chem_comp.mon_nstd_parent_comp_id A1H72 _chem_comp.pdbx_synonyms "(1R,2S,4S,6E)-6-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-5-methylidene-cyclohexane-1,2,4-triol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-10 _chem_comp.pdbx_modified_date 2024-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 432.636 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H72 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EZ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H72 C14 C1 C 0 1 N N S N N N -30.500 17.446 -4.589 -0.072 1.836 -1.153 C14 A1H72 1 A1H72 C6 C2 C 0 1 N N N N N N -31.986 17.494 -4.873 -1.397 1.845 -0.450 C6 A1H72 2 A1H72 C9 C3 C 0 1 N N N N N N -32.503 16.122 -5.211 -1.625 3.020 0.490 C9 A1H72 3 A1H72 C11 C4 C 0 1 N N N N N N -31.726 15.525 -6.396 -0.443 3.187 1.444 C11 A1H72 4 A1H72 C12 C5 C 0 1 N N N N N N -30.218 15.546 -6.150 0.901 3.162 0.696 C12 A1H72 5 A1H72 C18 C6 C 0 1 N N N N N N -29.920 17.909 -6.995 0.705 0.704 0.939 C18 A1H72 6 A1H72 C5 C7 C 0 1 N N N N N N -34.737 19.845 -5.597 -4.512 -0.012 -0.109 C5 A1H72 7 A1H72 C10 C8 C 0 1 N N N N N N -34.067 21.127 -5.929 -4.273 -1.146 -1.027 C10 A1H72 8 A1H72 C19 C9 C 0 1 N N N N N N -32.979 21.237 -6.675 -3.717 -0.969 -2.225 C19 A1H72 9 A1H72 C21 C10 C 0 1 N N N N N N -25.804 16.367 -5.264 3.660 1.679 1.302 C21 A1H72 10 A1H72 C23 C11 C 0 1 N N N N N N -25.602 17.492 -8.114 5.430 -0.458 0.205 C23 A1H72 11 A1H72 C25 C12 C 0 1 N N N N N N -24.379 18.123 -10.325 7.597 -1.700 0.284 C25 A1H72 12 A1H72 C17 C13 C 0 1 N N R N N N -28.267 17.049 -5.219 2.293 1.538 -0.785 C17 A1H72 13 A1H72 C7 C14 C 0 1 N N N N N N -32.692 18.628 -4.934 -2.310 0.892 -0.635 C7 A1H72 14 A1H72 C28 C15 C 0 1 N N N N N N -34.086 18.738 -5.215 -3.588 0.952 0.079 C28 A1H72 15 A1H72 C4 C16 C 0 1 N N R N N N -36.221 19.842 -5.878 -5.848 0.018 0.605 C4 A1H72 16 A1H72 C3 C17 C 0 1 N N S N N N -36.941 21.084 -5.363 -6.120 -1.377 1.178 C3 A1H72 17 A1H72 C2 C18 C 0 1 N N N N N N -36.248 22.341 -5.874 -6.103 -2.412 0.053 C2 A1H72 18 A1H72 C1 C19 C 0 1 N N S N N N -34.797 22.341 -5.411 -4.690 -2.519 -0.539 C1 A1H72 19 A1H72 C16 C20 C 0 1 N N N N N N -28.247 18.433 -4.540 1.847 0.630 -1.972 C16 A1H72 20 A1H72 C20 C21 C 0 1 N N R N N N -27.023 16.764 -6.093 3.264 0.784 0.126 C20 A1H72 21 A1H72 C22 C22 C 0 1 N N N N N N -26.655 17.897 -7.075 4.515 0.402 -0.668 C22 A1H72 22 A1H72 C24 C23 C 0 1 N N N N N N -25.449 18.483 -9.282 6.681 -0.840 -0.589 C24 A1H72 23 A1H72 C26 C24 C 0 1 N N N N N N -24.711 16.823 -11.037 8.902 -1.978 -0.464 C26 A1H72 24 A1H72 C15 C25 C 0 1 N N N N N N -29.727 18.695 -4.115 0.295 0.558 -1.911 C15 A1H72 25 A1H72 C27 C26 C 0 1 N N N N N N -24.169 19.246 -11.328 7.904 -0.959 1.587 C27 A1H72 26 A1H72 C13 C27 C 0 1 N N R N N N -29.689 16.949 -5.814 1.007 1.846 -0.033 C13 A1H72 27 A1H72 O4 O1 O 0 1 N N N N N N -36.809 18.658 -5.365 -6.881 0.368 -0.318 O4 A1H72 28 A1H72 O2 O2 O 0 1 N N N N N N -36.944 21.082 -3.931 -7.400 -1.388 1.814 O2 A1H72 29 A1H72 O1 O3 O 0 1 N N N N N N -34.166 23.538 -5.840 -3.781 -2.969 0.467 O1 A1H72 30 A1H72 O3 O4 O 0 1 N N N N N N -23.133 17.907 -9.636 6.946 -2.937 0.582 O3 A1H72 31 A1H72 H141 H1 H 0 0 N N N N N N -30.359 16.687 -3.806 0.028 2.710 -1.797 H141 A1H72 32 A1H72 H91 H2 H 0 1 N N N N N N -33.568 16.193 -5.477 -1.744 3.931 -0.096 H91 A1H72 33 A1H72 H92 H3 H 0 1 N N N N N N -32.386 15.466 -4.336 -2.531 2.846 1.070 H92 A1H72 34 A1H72 H111 H4 H 0 0 N N N N N N -31.948 16.111 -7.300 -0.539 4.136 1.971 H111 A1H72 35 A1H72 H112 H5 H 0 0 N N N N N N -32.048 14.484 -6.546 -0.460 2.374 2.170 H112 A1H72 36 A1H72 H121 H6 H 0 0 N N N N N N -29.990 14.874 -5.310 0.938 3.979 -0.025 H121 A1H72 37 A1H72 H122 H7 H 0 0 N N N N N N -29.709 15.186 -7.056 1.721 3.258 1.407 H122 A1H72 38 A1H72 H181 H8 H 0 0 N N N N N N -29.536 18.907 -6.737 -0.299 0.828 1.345 H181 A1H72 39 A1H72 H182 H9 H 0 0 N N N N N N -29.392 17.531 -7.883 0.769 -0.248 0.413 H182 A1H72 40 A1H72 H183 H10 H 0 0 N N N N N N -30.997 17.975 -7.209 1.430 0.718 1.753 H183 A1H72 41 A1H72 H191 H11 H 0 0 N N N N N N -32.593 22.214 -6.927 -3.429 0.021 -2.547 H191 A1H72 42 A1H72 H192 H12 H 0 0 N N N N N N -32.477 20.350 -7.032 -3.554 -1.816 -2.875 H192 A1H72 43 A1H72 H211 H13 H 0 0 N N N N N N -26.079 15.560 -4.569 4.141 2.582 0.925 H211 A1H72 44 A1H72 H212 H14 H 0 0 N N N N N N -25.004 16.018 -5.933 2.769 1.952 1.867 H212 A1H72 45 A1H72 H213 H15 H 0 0 N N N N N N -25.450 17.238 -4.692 4.352 1.142 1.950 H213 A1H72 46 A1H72 H231 H16 H 0 0 N N N N N N -25.885 16.513 -8.528 5.721 0.105 1.092 H231 A1H72 47 A1H72 H232 H17 H 0 0 N N N N N N -24.631 17.407 -7.605 4.901 -1.362 0.506 H232 A1H72 48 A1H72 H171 H18 H 0 0 N N N N N N -28.232 16.314 -4.402 2.757 2.451 -1.160 H171 A1H72 49 A1H72 H71 H19 H 0 1 N N N N N N -32.156 19.548 -4.753 -2.108 0.075 -1.312 H71 A1H72 50 A1H72 H61 H20 H 0 1 N N N N N N -34.676 17.839 -5.109 -3.790 1.770 0.756 H61 A1H72 51 A1H72 H41 H21 H 0 1 N N N N N N -36.340 19.836 -6.972 -5.816 0.748 1.414 H41 A1H72 52 A1H72 H31 H22 H 0 1 N N N N N N -37.974 21.073 -5.740 -5.351 -1.625 1.909 H31 A1H72 53 A1H72 H21 H23 H 0 1 N N N N N N -36.760 23.230 -5.477 -6.405 -3.383 0.445 H21 A1H72 54 A1H72 H22 H24 H 0 1 N N N N N N -36.283 22.358 -6.973 -6.800 -2.104 -0.727 H22 A1H72 55 A1H72 H11 H25 H 0 1 N N N N N N -34.792 22.301 -4.312 -4.692 -3.220 -1.373 H11 A1H72 56 A1H72 H161 H26 H 0 0 N N N N N N -27.588 18.422 -3.659 2.164 1.069 -2.918 H161 A1H72 57 A1H72 H162 H27 H 0 0 N N N N N N -27.905 19.205 -5.245 2.272 -0.368 -1.860 H162 A1H72 58 A1H72 H201 H28 H 0 0 N N N N N N -27.276 15.891 -6.712 2.783 -0.118 0.502 H201 A1H72 59 A1H72 H221 H29 H 0 0 N N N N N N -26.263 18.746 -6.495 5.044 1.306 -0.969 H221 A1H72 60 A1H72 H222 H30 H 0 0 N N N N N N -27.567 18.206 -7.607 4.225 -0.161 -1.555 H222 A1H72 61 A1H72 H241 H31 H 0 0 N N N N N N -25.193 19.466 -8.860 6.391 -1.403 -1.476 H241 A1H72 62 A1H72 H242 H32 H 0 0 N N N N N N -26.417 18.548 -9.800 7.211 0.064 -0.890 H242 A1H72 63 A1H72 H261 H33 H 0 0 N N N N N N -24.859 16.025 -10.294 8.683 -2.507 -1.392 H261 A1H72 64 A1H72 H262 H34 H 0 0 N N N N N N -25.632 16.952 -11.625 9.398 -1.035 -0.692 H262 A1H72 65 A1H72 H263 H35 H 0 0 N N N N N N -23.883 16.551 -11.708 9.554 -2.591 0.158 H263 A1H72 66 A1H72 H151 H36 H 0 0 N N N N N N -30.116 19.600 -4.604 -0.030 -0.324 -1.360 H151 A1H72 67 A1H72 H152 H37 H 0 0 N N N N N N -29.803 18.806 -3.023 -0.132 0.568 -2.913 H152 A1H72 68 A1H72 H271 H38 H 0 0 N N N N N N -23.930 20.177 -10.793 8.556 -1.571 2.209 H271 A1H72 69 A1H72 H272 H39 H 0 0 N N N N N N -23.338 18.986 -12.000 8.400 -0.015 1.359 H272 A1H72 70 A1H72 H273 H40 H 0 0 N N N N N N -25.087 19.388 -11.917 6.974 -0.761 2.120 H273 A1H72 71 A1H72 H39 H41 H 0 1 N N N N N N -37.742 18.663 -5.545 -6.761 1.235 -0.732 H39 A1H72 72 A1H72 HO2 H42 H 0 1 N N N N N N -37.393 21.857 -3.614 -7.640 -2.241 2.201 HO2 A1H72 73 A1H72 HO1 H43 H 0 1 N N N N N N -34.643 24.287 -5.502 -2.865 -3.042 0.165 HO1 A1H72 74 A1H72 HO3 H44 H 0 1 N N N N N N -23.238 17.208 -9.002 7.470 -3.534 1.134 HO3 A1H72 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H72 C27 C25 SING N N 1 A1H72 C26 C25 SING N N 2 A1H72 C25 O3 SING N N 3 A1H72 C25 C24 SING N N 4 A1H72 C24 C23 SING N N 5 A1H72 C23 C22 SING N N 6 A1H72 C22 C20 SING N N 7 A1H72 C18 C13 SING N N 8 A1H72 C19 C10 DOUB N N 9 A1H72 C11 C12 SING N N 10 A1H72 C11 C9 SING N N 11 A1H72 C12 C13 SING N N 12 A1H72 C20 C21 SING N N 13 A1H72 C20 C17 SING N N 14 A1H72 C10 C5 SING N N 15 A1H72 C10 C1 SING N N 16 A1H72 C4 C5 SING N N 17 A1H72 C4 O4 SING N N 18 A1H72 C4 C3 SING N N 19 A1H72 C2 C1 SING N N 20 A1H72 C2 C3 SING N N 21 A1H72 O1 C1 SING N N 22 A1H72 C13 C17 SING N N 23 A1H72 C13 C14 SING N N 24 A1H72 C5 C28 DOUB N E 25 A1H72 C3 O2 SING N N 26 A1H72 C17 C16 SING N N 27 A1H72 C28 C7 SING N N 28 A1H72 C9 C6 SING N N 29 A1H72 C7 C6 DOUB N E 30 A1H72 C6 C14 SING N N 31 A1H72 C14 C15 SING N N 32 A1H72 C16 C15 SING N N 33 A1H72 C14 H141 SING N N 34 A1H72 C9 H91 SING N N 35 A1H72 C9 H92 SING N N 36 A1H72 C11 H111 SING N N 37 A1H72 C11 H112 SING N N 38 A1H72 C12 H121 SING N N 39 A1H72 C12 H122 SING N N 40 A1H72 C18 H181 SING N N 41 A1H72 C18 H182 SING N N 42 A1H72 C18 H183 SING N N 43 A1H72 C19 H191 SING N N 44 A1H72 C19 H192 SING N N 45 A1H72 C21 H211 SING N N 46 A1H72 C21 H212 SING N N 47 A1H72 C21 H213 SING N N 48 A1H72 C23 H231 SING N N 49 A1H72 C23 H232 SING N N 50 A1H72 C17 H171 SING N N 51 A1H72 C7 H71 SING N N 52 A1H72 C28 H61 SING N N 53 A1H72 C4 H41 SING N N 54 A1H72 C3 H31 SING N N 55 A1H72 C2 H21 SING N N 56 A1H72 C2 H22 SING N N 57 A1H72 C1 H11 SING N N 58 A1H72 C16 H161 SING N N 59 A1H72 C16 H162 SING N N 60 A1H72 C20 H201 SING N N 61 A1H72 C22 H221 SING N N 62 A1H72 C22 H222 SING N N 63 A1H72 C24 H241 SING N N 64 A1H72 C24 H242 SING N N 65 A1H72 C26 H261 SING N N 66 A1H72 C26 H262 SING N N 67 A1H72 C26 H263 SING N N 68 A1H72 C15 H151 SING N N 69 A1H72 C15 H152 SING N N 70 A1H72 C27 H271 SING N N 71 A1H72 C27 H272 SING N N 72 A1H72 C27 H273 SING N N 73 A1H72 O4 H39 SING N N 74 A1H72 O2 HO2 SING N N 75 A1H72 O1 HO1 SING N N 76 A1H72 O3 HO3 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H72 InChI InChI 1.06 "InChI=1S/C27H44O4/c1-17(8-6-14-26(3,4)31)21-12-13-22-19(9-7-15-27(21,22)5)10-11-20-18(2)23(28)16-24(29)25(20)30/h10-11,17,21-25,28-31H,2,6-9,12-16H2,1,3-5H3/b19-10+,20-11+/t17-,21-,22+,23+,24+,25-,27-/m1/s1" A1H72 InChIKey InChI 1.06 PYBFQKUAPVFDQB-ABENJQMPSA-N A1H72 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C/3[C@@H](O)[C@@H](O)C[C@H](O)C/3=C" A1H72 SMILES CACTVS 3.385 "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3[CH](O)[CH](O)C[CH](O)C3=C" A1H72 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\[C@H]([C@H](C[C@@H](C3=C)O)O)O)C" A1H72 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3C(C(CC(C3=C)O)O)O)C" # _pdbx_chem_comp_identifier.comp_id A1H72 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},4~{S},6~{E})-6-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-5-methylidene-cyclohexane-1,2,4-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H72 "Create component" 2024-04-10 PDBE A1H72 "Modify aromatic_flag" 2024-04-27 PDBE A1H72 "Other modification" 2024-04-28 PDBE A1H72 "Modify model coordinates code" 2024-04-28 PDBE A1H72 "Initial release" 2024-06-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H72 _pdbx_chem_comp_synonyms.name "(1R,2S,4S,6E)-6-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-5-methylidene-cyclohexane-1,2,4-triol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #