data_A1H7N # _chem_comp.id A1H7N _chem_comp.name "1-[3-pyridin-4-yl-2-[3-(2-pyrimidin-2-ylethynyl)phenyl]-4,6-dihydropyrrolo[3,4-d]imidazol-5-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H20 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-04 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H7N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EWS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H7N C1 C1 C 0 1 N N N N N N -25.777 -10.184 4.577 -5.698 4.109 0.061 C1 A1H7N 1 A1H7N C2 C2 C 0 1 N N N N N N -27.036 -9.374 4.392 -5.706 2.609 -0.082 C2 A1H7N 2 A1H7N C3 C3 C 0 1 N N N N N N -28.093 -11.422 3.457 -3.206 2.472 0.197 C3 A1H7N 3 A1H7N C7 C4 C 0 1 Y N N N N N -31.867 -11.957 -1.107 0.540 -2.380 0.491 C7 A1H7N 4 A1H7N C8 C5 C 0 1 Y N N N N N -32.705 -12.550 -2.037 1.743 -3.055 0.563 C8 A1H7N 5 A1H7N C9 C6 C 0 1 Y N N N N N -33.483 -13.638 -1.680 2.935 -2.369 0.451 C9 A1H7N 6 A1H7N C10 C7 C 0 1 Y N N N N N -33.423 -14.140 -0.384 2.932 -0.983 0.263 C10 A1H7N 7 A1H7N C11 C8 C 0 1 Y N N N N N -32.580 -13.543 0.552 1.720 -0.296 0.189 C11 A1H7N 8 A1H7N C12 C9 C 0 1 N N N N N N -34.225 -15.270 -0.005 4.169 -0.271 0.147 C12 A1H7N 9 A1H7N C13 C10 C 0 1 N N N N N N -34.870 -16.207 0.367 5.183 0.313 0.052 C13 A1H7N 10 A1H7N C14 C11 C 0 1 Y N N N N N -35.644 -17.308 0.827 6.420 1.024 -0.063 C14 A1H7N 11 A1H7N C15 C12 C 0 1 Y N N N N N -37.419 -18.052 1.983 7.522 3.027 -0.352 C15 A1H7N 12 A1H7N C16 C13 C 0 1 Y N N N N N -37.090 -19.355 1.680 8.734 2.356 -0.280 C16 A1H7N 13 A1H7N C19 C14 C 0 1 N N N N N N -29.392 -9.425 3.596 -4.382 0.466 -0.131 C19 A1H7N 14 A1H7N C20 C15 C 0 1 Y N N N N N -32.124 -9.619 1.501 -2.259 -2.214 -0.137 C20 A1H7N 15 A1H7N C21 C16 C 0 1 Y N N N N N -33.451 -9.987 1.621 -1.777 -2.911 -1.243 C21 A1H7N 16 A1H7N C22 C17 C 0 1 Y N N N N N -34.425 -9.040 1.373 -2.062 -4.256 -1.365 C22 A1H7N 17 A1H7N C24 C18 C 0 1 Y N N N N N -31.826 -8.319 1.138 -3.008 -2.912 0.808 C24 A1H7N 18 A1H7N O O1 O 0 1 N N N N N N -27.089 -8.196 4.709 -6.752 2.022 -0.260 O A1H7N 19 A1H7N C C19 C 0 1 N N N N N N -25.260 -10.133 5.997 -7.128 4.640 -0.056 C A1H7N 20 A1H7N N N1 N 0 1 N N N N N N -28.090 -10.022 3.858 -4.549 1.920 -0.012 N A1H7N 21 A1H7N C18 C20 C 0 1 Y N N N N N -30.013 -10.379 2.626 -2.912 0.169 0.013 C18 A1H7N 22 A1H7N C4 C21 C 0 1 Y N N N N N -29.264 -11.521 2.551 -2.236 1.316 0.201 C4 A1H7N 23 A1H7N N4 N2 N 0 1 Y N N N N N -31.073 -10.571 1.749 -1.993 -0.850 0.023 N4 A1H7N 24 A1H7N C23 C22 C 0 1 Y N N N N N -32.868 -7.440 0.910 -3.243 -4.258 0.616 C23 A1H7N 25 A1H7N N5 N3 N 0 1 Y N N N N N -34.158 -7.777 1.021 -2.780 -4.880 -0.451 N5 A1H7N 26 A1H7N C5 C23 C 0 1 Y N N N N N -30.910 -11.822 1.187 -0.768 -0.277 0.221 C5 A1H7N 27 A1H7N N1 N4 N 0 1 Y N N N N N -29.824 -12.411 1.659 -0.933 1.022 0.325 N1 A1H7N 28 A1H7N C6 C24 C 0 1 Y N N N N N -31.798 -12.448 0.192 0.522 -0.997 0.303 C6 A1H7N 29 A1H7N N3 N5 N 0 1 Y N N N N N -35.211 -18.515 0.459 7.565 0.352 0.005 N3 A1H7N 30 A1H7N C17 C25 C 0 1 Y N N N N N -35.964 -19.529 0.906 8.723 0.980 -0.099 C17 A1H7N 31 A1H7N N2 N6 N 0 1 Y N N N N N -36.709 -16.995 1.568 6.398 2.341 -0.241 N2 A1H7N 32 A1H7N H1 H1 H 0 1 N N N N N N -25.990 -11.231 4.316 -5.289 4.380 1.034 H1 A1H7N 33 A1H7N H2 H2 H 0 1 N N N N N N -25.001 -9.789 3.905 -5.083 4.546 -0.726 H2 A1H7N 34 A1H7N H3 H3 H 0 1 N N N N N N -28.214 -12.081 4.330 -2.958 3.160 -0.611 H3 A1H7N 35 A1H7N H4 H4 H 0 1 N N N N N N -27.164 -11.681 2.928 -3.165 2.994 1.153 H4 A1H7N 36 A1H7N H5 H5 H 0 1 N N N N N N -31.264 -11.108 -1.393 -0.389 -2.925 0.575 H5 A1H7N 37 A1H7N H6 H6 H 0 1 N N N N N N -32.752 -12.162 -3.044 1.751 -4.126 0.708 H6 A1H7N 38 A1H7N H7 H7 H 0 1 N N N N N N -34.136 -14.097 -2.407 3.872 -2.903 0.509 H7 A1H7N 39 A1H7N H8 H8 H 0 1 N N N N N N -32.533 -13.931 1.559 1.711 0.774 0.044 H8 A1H7N 40 A1H7N H9 H9 H 0 1 N N N N N N -38.296 -17.873 2.587 7.498 4.097 -0.493 H9 A1H7N 41 A1H7N H10 H10 H 0 1 N N N N N N -37.680 -20.190 2.028 9.667 2.893 -0.364 H10 A1H7N 42 A1H7N H11 H11 H 0 1 N N N N N N -29.285 -8.424 3.152 -4.940 -0.036 0.659 H11 A1H7N 43 A1H7N H12 H12 H 0 1 N N N N N N -29.988 -9.356 4.518 -4.736 0.131 -1.106 H12 A1H7N 44 A1H7N H13 H13 H 0 1 N N N N N N -33.720 -10.994 1.903 -1.190 -2.405 -1.996 H13 A1H7N 45 A1H7N H14 H14 H 0 1 N N N N N N -35.459 -9.335 1.468 -1.692 -4.804 -2.219 H14 A1H7N 46 A1H7N H15 H15 H 0 1 N N N N N N -30.800 -7.997 1.035 -3.398 -2.407 1.679 H15 A1H7N 47 A1H7N H16 H16 H 0 1 N N N N N N -24.345 -10.738 6.076 -7.123 5.725 0.047 H16 A1H7N 48 A1H7N H17 H17 H 0 1 N N N N N N -25.036 -9.091 6.268 -7.538 4.370 -1.030 H17 A1H7N 49 A1H7N H18 H18 H 0 1 N N N N N N -26.024 -10.533 6.680 -7.743 4.203 0.731 H18 A1H7N 50 A1H7N H19 H19 H 0 1 N N N N N N -32.628 -6.426 0.627 -3.827 -4.806 1.341 H19 A1H7N 51 A1H7N H20 H20 H 0 1 N N N N N N -35.673 -20.536 0.646 9.650 0.429 -0.043 H20 A1H7N 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H7N C8 C9 DOUB Y N 1 A1H7N C8 C7 SING Y N 2 A1H7N C9 C10 SING Y N 3 A1H7N C7 C6 DOUB Y N 4 A1H7N C10 C12 SING N N 5 A1H7N C10 C11 DOUB Y N 6 A1H7N C12 C13 TRIP N N 7 A1H7N C6 C11 SING Y N 8 A1H7N C6 C5 SING N N 9 A1H7N C13 C14 SING N N 10 A1H7N N3 C14 DOUB Y N 11 A1H7N N3 C17 SING Y N 12 A1H7N C14 N2 SING Y N 13 A1H7N C17 C16 DOUB Y N 14 A1H7N C23 N5 DOUB Y N 15 A1H7N C23 C24 SING Y N 16 A1H7N N5 C22 SING Y N 17 A1H7N C24 C20 DOUB Y N 18 A1H7N C5 N1 DOUB Y N 19 A1H7N C5 N4 SING Y N 20 A1H7N C22 C21 DOUB Y N 21 A1H7N C20 C21 SING Y N 22 A1H7N C20 N4 SING N N 23 A1H7N N2 C15 DOUB Y N 24 A1H7N N1 C4 SING Y N 25 A1H7N C16 C15 SING Y N 26 A1H7N N4 C18 SING Y N 27 A1H7N C4 C18 DOUB Y N 28 A1H7N C4 C3 SING N N 29 A1H7N C18 C19 SING N N 30 A1H7N C3 N SING N N 31 A1H7N C19 N SING N N 32 A1H7N N C2 SING N N 33 A1H7N C2 C1 SING N N 34 A1H7N C2 O DOUB N N 35 A1H7N C1 C SING N N 36 A1H7N C1 H1 SING N N 37 A1H7N C1 H2 SING N N 38 A1H7N C3 H3 SING N N 39 A1H7N C3 H4 SING N N 40 A1H7N C7 H5 SING N N 41 A1H7N C8 H6 SING N N 42 A1H7N C9 H7 SING N N 43 A1H7N C11 H8 SING N N 44 A1H7N C15 H9 SING N N 45 A1H7N C16 H10 SING N N 46 A1H7N C19 H11 SING N N 47 A1H7N C19 H12 SING N N 48 A1H7N C21 H13 SING N N 49 A1H7N C22 H14 SING N N 50 A1H7N C24 H15 SING N N 51 A1H7N C H16 SING N N 52 A1H7N C H17 SING N N 53 A1H7N C H18 SING N N 54 A1H7N C23 H19 SING N N 55 A1H7N C17 H20 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H7N InChI InChI 1.06 "InChI=1S/C25H20N6O/c1-2-24(32)30-16-21-22(17-30)31(20-9-13-26-14-10-20)25(29-21)19-6-3-5-18(15-19)7-8-23-27-11-4-12-28-23/h3-6,9-15H,2,16-17H2,1H3" A1H7N InChIKey InChI 1.06 LFOYLHMWBDCPST-UHFFFAOYSA-N A1H7N SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1Cc2nc(n(c3ccncc3)c2C1)c4cccc(c4)C#Cc5ncccn5" A1H7N SMILES CACTVS 3.385 "CCC(=O)N1Cc2nc(n(c3ccncc3)c2C1)c4cccc(c4)C#Cc5ncccn5" A1H7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1Cc2c(n(c(n2)c3cccc(c3)C#Cc4ncccn4)c5ccncc5)C1" A1H7N SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1Cc2c(n(c(n2)c3cccc(c3)C#Cc4ncccn4)c5ccncc5)C1" # _pdbx_chem_comp_identifier.comp_id A1H7N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3-pyridin-4-yl-2-[3-(2-pyrimidin-2-ylethynyl)phenyl]-4,6-dihydropyrrolo[3,4-d]imidazol-5-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H7N "Create component" 2024-04-04 PDBE A1H7N "Modify PCM" 2024-09-27 PDBE A1H7N "Initial release" 2024-11-06 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H7N _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #