data_A1H7V # _chem_comp.id A1H7V _chem_comp.name "(2R,3S,4S,5R,6R)-6-dodecoxy-5-fluoranyl-2-(hydroxymethyl)oxane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H35 F O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-[1-[(2R,3R,4S,5S,6R)-3-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadecanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H7V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EWF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H7V C4 C1 C 0 1 N N S N N N 9.592 61.572 3.754 -6.379 0.506 0.315 C4 A1H7V 1 A1H7V C3 C2 C 0 1 N N S N N N 8.255 61.489 3.154 -6.224 -0.920 -0.222 C3 A1H7V 2 A1H7V C2 C3 C 0 1 N N R N N N 8.213 60.750 1.859 -4.866 -1.475 0.219 C2 A1H7V 3 A1H7V C1 C4 C 0 1 N N R N N N 9.174 61.410 0.884 -3.757 -0.543 -0.277 C1 A1H7V 4 A1H7V CAA CAA C 0 1 N N N N N N 9.444 62.034 -1.338 -1.374 -0.287 -0.325 CAA A1H7V 5 A1H7V CAB CAB C 0 1 N N N N N N 10.979 62.286 -1.295 -0.078 -0.886 0.224 CAB A1H7V 6 A1H7V C5 C7 C 0 1 N N R N N N 10.673 61.830 2.707 -5.212 1.362 -0.183 C5 A1H7V 7 A1H7V C6 C8 C 0 1 N N N N N N 12.037 61.406 3.275 -5.328 2.772 0.400 C6 A1H7V 8 A1H7V F1 F1 F 0 1 N N N N N N 6.943 60.806 1.308 -4.683 -2.751 -0.325 F1 A1H7V 9 A1H7V O4 O1 O 0 1 N N N N N N 9.725 62.733 4.694 -7.611 1.060 -0.150 O4 A1H7V 10 A1H7V O3 O2 O 0 1 N N N N N N 7.419 60.742 4.118 -7.269 -1.744 0.299 O3 A1H7V 11 A1H7V O1 O3 O 0 1 N Y N N N N 9.126 60.961 -0.406 -2.490 -1.024 0.177 O1 A1H7V 12 A1H7V O5 O4 O 0 1 N N N N N N 10.548 61.176 1.409 -3.978 0.773 0.234 O5 A1H7V 13 A1H7V O6 O5 O 0 1 N N N N N N 13.064 61.557 2.335 -4.307 3.603 -0.156 O6 A1H7V 14 A1H7V H4 H4 H 0 1 N N N N N N 9.822 60.638 4.288 -6.377 0.486 1.405 H4 A1H7V 15 A1H7V H3 H3 H 0 1 N N N N N N 7.845 62.500 3.014 -6.278 -0.907 -1.311 H3 A1H7V 16 A1H7V H2 H2 H 0 1 N N N N N N 8.526 59.708 2.022 -4.832 -1.534 1.306 H2 A1H7V 17 A1H7V H1 H1 H 0 1 N N N N N N 8.981 62.493 0.907 -3.766 -0.516 -1.367 H1 A1H7V 18 A1H7V H5 H5 H 0 1 N N N N N N 10.714 62.917 2.540 -5.239 1.415 -1.271 H5 A1H7V 19 A1H7V H61 H61 H 0 1 N N N N N N 11.984 60.350 3.577 -6.306 3.187 0.156 H61 A1H7V 20 A1H7V H62 H62 H 0 1 N N N N N N 12.265 62.027 4.154 -5.212 2.728 1.483 H62 A1H7V 21 A1H7V H6 H6 H 0 1 N Y N N N N 9.081 62.654 5.388 -8.394 0.566 0.127 H6 A1H7V 22 A1H7V HO3 HO3 H 0 1 N Y N N N N 7.425 61.189 4.956 -7.232 -2.662 -0.001 HO3 A1H7V 23 A1H7V HO6 HO6 H 0 1 N Y N N N N 13.889 61.286 2.720 -4.320 4.513 0.170 HO6 A1H7V 24 A1H7V CAC CAC C 0 1 N N N N N N ? ? ? 1.117 -0.097 -0.314 CAC A1H7V 25 A1H7V CAD CAD C 0 1 N N N N N N ? ? ? 2.413 -0.697 0.235 CAD A1H7V 26 A1H7V CAE CAE C 0 1 N N N N N N ? ? ? 3.608 0.093 -0.303 CAE A1H7V 27 A1H7V CAF CAF C 0 1 N N N N N N ? ? ? 4.904 -0.507 0.246 CAF A1H7V 28 A1H7V CAG CAG C 0 1 N N N N N N ? ? ? 6.100 0.283 -0.292 CAG A1H7V 29 A1H7V CAH CAH C 0 1 N N N N N N ? ? ? 7.396 -0.317 0.257 CAH A1H7V 30 A1H7V CAI CAI C 0 1 N N N N N N ? ? ? 8.591 0.473 -0.281 CAI A1H7V 31 A1H7V CAJ CAJ C 0 1 N N N N N N ? ? ? 9.887 -0.127 0.268 CAJ A1H7V 32 A1H7V CAK CAK C 0 1 N N N N N N ? ? ? 11.082 0.663 -0.270 CAK A1H7V 33 A1H7V CAL CAL C 0 1 N N N N N N ? ? ? 12.378 0.063 0.279 CAL A1H7V 34 A1H7V H7 H7 H 0 1 N N N N N N 8.909 62.950 -1.046 -1.455 0.754 -0.011 H7 A1H7V 35 A1H7V H8 H8 H 0 1 N N N N N N 9.144 61.743 -2.355 -1.365 -0.338 -1.414 H8 A1H7V 36 A1H7V H9 H9 H 0 1 N N N N N N 11.460 62.709 -2.190 -0.087 -0.835 1.313 H9 A1H7V 37 A1H7V H10 H10 H 0 1 N N N N N N 11.402 62.756 -0.395 0.003 -1.927 -0.091 H10 A1H7V 38 A1H7V H11 H11 H 0 1 N N N N N N ? ? ? 1.126 -0.148 -1.403 H11 A1H7V 39 A1H7V H12 H12 H 0 1 N N N N N N ? ? ? 1.036 0.944 0.000 H12 A1H7V 40 A1H7V H13 H13 H 0 1 N N N N N N ? ? ? 2.405 -0.646 1.324 H13 A1H7V 41 A1H7V H14 H14 H 0 1 N N N N N N ? ? ? 2.494 -1.737 -0.080 H14 A1H7V 42 A1H7V H15 H15 H 0 1 N N N N N N ? ? ? 3.617 0.042 -1.392 H15 A1H7V 43 A1H7V H16 H16 H 0 1 N N N N N N ? ? ? 3.528 1.134 0.011 H16 A1H7V 44 A1H7V H17 H17 H 0 1 N N N N N N ? ? ? 4.896 -0.456 1.335 H17 A1H7V 45 A1H7V H18 H18 H 0 1 N N N N N N ? ? ? 4.985 -1.547 -0.069 H18 A1H7V 46 A1H7V H19 H19 H 0 1 N N N N N N ? ? ? 6.108 0.232 -1.381 H19 A1H7V 47 A1H7V H20 H20 H 0 1 N N N N N N ? ? ? 6.019 1.323 0.022 H20 A1H7V 48 A1H7V H21 H21 H 0 1 N N N N N N ? ? ? 7.387 -0.266 1.346 H21 A1H7V 49 A1H7V H22 H22 H 0 1 N N N N N N ? ? ? 7.476 -1.357 -0.058 H22 A1H7V 50 A1H7V H23 H23 H 0 1 N N N N N N ? ? ? 8.599 0.422 -1.370 H23 A1H7V 51 A1H7V H24 H24 H 0 1 N N N N N N ? ? ? 8.510 1.513 0.033 H24 A1H7V 52 A1H7V H25 H25 H 0 1 N N N N N N ? ? ? 9.878 -0.076 1.357 H25 A1H7V 53 A1H7V H26 H26 H 0 1 N N N N N N ? ? ? 9.967 -1.168 -0.047 H26 A1H7V 54 A1H7V H27 H27 H 0 1 N N N N N N ? ? ? 11.091 0.612 -1.359 H27 A1H7V 55 A1H7V H28 H28 H 0 1 N N N N N N ? ? ? 11.001 1.703 0.044 H28 A1H7V 56 A1H7V H29 H29 H 0 1 N N N N N N ? ? ? 13.229 0.625 -0.104 H29 A1H7V 57 A1H7V H30 H30 H 0 1 N N N N N N ? ? ? 12.369 0.114 1.368 H30 A1H7V 58 A1H7V H31 H31 H 0 1 N N N N N N ? ? ? 12.459 -0.978 -0.036 H31 A1H7V 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H7V CAA CAB SING N N 1 A1H7V CAA O1 SING N N 2 A1H7V O1 C1 SING N N 3 A1H7V C1 O5 SING N N 4 A1H7V C1 C2 SING N N 5 A1H7V F1 C2 SING N N 6 A1H7V O5 C5 SING N N 7 A1H7V C2 C3 SING N N 8 A1H7V O6 C6 SING N N 9 A1H7V C5 C6 SING N N 10 A1H7V C5 C4 SING N N 11 A1H7V C3 C4 SING N N 12 A1H7V C3 O3 SING N N 13 A1H7V C4 O4 SING N N 14 A1H7V C4 H4 SING N N 15 A1H7V C3 H3 SING N N 16 A1H7V C2 H2 SING N N 17 A1H7V C1 H1 SING N N 18 A1H7V C5 H5 SING N N 19 A1H7V C6 H61 SING N N 20 A1H7V C6 H62 SING N N 21 A1H7V O4 H6 SING N N 22 A1H7V O3 HO3 SING N N 23 A1H7V O6 HO6 SING N N 24 A1H7V CAB CAC SING N N 25 A1H7V CAC CAD SING N N 26 A1H7V CAD CAE SING N N 27 A1H7V CAE CAF SING N N 28 A1H7V CAF CAG SING N N 29 A1H7V CAG CAH SING N N 30 A1H7V CAH CAI SING N N 31 A1H7V CAI CAJ SING N N 32 A1H7V CAJ CAK SING N N 33 A1H7V CAK CAL SING N N 34 A1H7V CAA H7 SING N N 35 A1H7V CAA H8 SING N N 36 A1H7V CAB H9 SING N N 37 A1H7V CAB H10 SING N N 38 A1H7V CAC H11 SING N N 39 A1H7V CAC H12 SING N N 40 A1H7V CAD H13 SING N N 41 A1H7V CAD H14 SING N N 42 A1H7V CAE H15 SING N N 43 A1H7V CAE H16 SING N N 44 A1H7V CAF H17 SING N N 45 A1H7V CAF H18 SING N N 46 A1H7V CAG H19 SING N N 47 A1H7V CAG H20 SING N N 48 A1H7V CAH H21 SING N N 49 A1H7V CAH H22 SING N N 50 A1H7V CAI H23 SING N N 51 A1H7V CAI H24 SING N N 52 A1H7V CAJ H25 SING N N 53 A1H7V CAJ H26 SING N N 54 A1H7V CAK H27 SING N N 55 A1H7V CAK H28 SING N N 56 A1H7V CAL H29 SING N N 57 A1H7V CAL H30 SING N N 58 A1H7V CAL H31 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H7V InChI InChI 1.06 "InChI=1S/C18H35FO5/c1-2-3-4-5-6-7-8-9-10-11-12-23-18-15(19)17(22)16(21)14(13-20)24-18/h14-18,20-22H,2-13H2,1H3/t14-,15-,16-,17-,18-/m1/s1" A1H7V InChIKey InChI 1.06 WREKVDBUBSBPMM-DUQPFJRNSA-N A1H7V SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1F" A1H7V SMILES CACTVS 3.385 "CCCCCCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1F" A1H7V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)F" A1H7V SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCOC1C(C(C(C(O1)CO)O)O)F" # _pdbx_chem_comp_identifier.comp_id A1H7V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{R})-6-dodecoxy-5-fluoranyl-2-(hydroxymethyl)oxane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H7V "Create component" 2024-04-05 PDBE A1H7V "Modify coordinates" 2024-04-15 PDBE A1H7V "Modify atom id" 2024-04-16 PDBE A1H7V "Modify leaving atom flag" 2024-04-16 PDBE A1H7V "Initial release" 2025-02-26 RCSB #