data_A1H81 # _chem_comp.id A1H81 _chem_comp.name "2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]-N-(2-methoxyethyl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H51 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-22 _chem_comp.pdbx_modified_date 2024-09-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 645.835 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H81 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F1K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H81 C12 C1 C 0 1 N N N N N N -7.340 5.143 -28.340 2.650 3.611 -0.511 C12 A1H81 1 A1H81 C1 C2 C 0 1 Y N N N N N -6.026 11.540 -20.782 2.889 -8.375 0.398 C1 A1H81 2 A1H81 C5 C3 C 0 1 Y N N N N N -4.518 10.155 -22.416 2.638 -5.817 -0.085 C5 A1H81 3 A1H81 N4 N1 N 0 1 N N N N N N -9.900 5.768 -30.088 5.117 6.951 -0.073 N4 A1H81 4 A1H81 C3 C4 C 0 1 N N N N N N -3.549 13.239 -22.910 4.999 -6.644 -2.061 C3 A1H81 5 A1H81 C10 C5 C 0 1 N N N N N N -4.591 5.074 -25.775 1.656 -0.020 -0.385 C10 A1H81 6 A1H81 C13 C6 C 0 1 N N N N N N -7.579 6.348 -30.422 4.174 4.874 0.885 C13 A1H81 7 A1H81 C14 C7 C 0 1 N N N N N N -8.771 5.452 -30.721 4.703 5.684 -0.271 C14 A1H81 8 A1H81 C16 C8 C 0 1 N N N N N N -11.878 6.191 -31.491 6.029 9.130 -0.704 C16 A1H81 9 A1H81 C17 C9 C 0 1 N N N N N N -13.169 8.131 -31.118 7.573 10.269 0.732 C17 A1H81 10 A1H81 N2 N2 N 0 1 N N N N N N -5.513 5.631 -26.777 2.039 1.317 0.088 N2 A1H81 11 A1H81 C6 C10 C 0 1 Y N N N N N -4.508 10.075 -23.812 3.416 -4.774 0.429 C6 A1H81 12 A1H81 C11 C11 C 0 1 N N N N N N -6.349 4.569 -27.346 2.334 2.210 -1.041 C11 A1H81 13 A1H81 C28 C12 C 0 1 N N N N N N 4.011 5.065 -24.808 -9.241 2.233 0.044 C28 A1H81 14 A1H81 C29 C13 C 0 1 N N N N N N 2.735 5.464 -25.534 -10.530 1.625 -0.513 C29 A1H81 15 A1H81 C30 C14 C 0 1 N N N N N N 1.551 7.191 -26.727 -11.244 3.709 -1.519 C30 A1H81 16 A1H81 C31 C15 C 0 1 N N N N N N 3.655 6.405 -27.553 -12.887 2.058 -0.857 C31 A1H81 17 A1H81 C32 C16 C 0 1 Y N N N N N 1.260 5.224 -21.260 -5.970 -0.421 0.320 C32 A1H81 18 A1H81 N N3 N 0 1 Y N N N N N -6.228 12.794 -20.495 3.682 -9.290 -0.076 N A1H81 19 A1H81 C C17 C 0 1 N N N N N N -6.832 10.487 -20.096 1.821 -8.559 1.445 C A1H81 20 A1H81 O O1 O 0 1 Y N N N N N -5.314 13.529 -21.293 4.438 -8.846 -0.908 O A1H81 21 A1H81 C15 C18 C 0 1 N N N N N N -11.207 5.276 -30.501 5.631 7.738 -1.197 C15 A1H81 22 A1H81 C18 C19 C 0 1 N N N N N N -5.795 6.879 -28.877 3.496 2.643 1.540 C18 A1H81 23 A1H81 C19 C20 C 0 1 N N N N N N -4.804 6.309 -27.868 3.181 1.243 1.010 C19 A1H81 24 A1H81 C2 C21 C 0 1 Y N N N N N -4.593 12.659 -22.029 4.245 -7.534 -1.107 C2 A1H81 25 A1H81 C20 C22 C 0 1 Y N N N N N -3.386 5.824 -22.809 -0.484 -2.546 -0.151 C20 A1H81 26 A1H81 C21 C23 C 0 1 N N N N N N -3.159 4.353 -22.726 -1.677 -1.633 -0.266 C21 A1H81 27 A1H81 C22 C24 C 0 1 N N N N N N -2.316 3.953 -21.516 -2.484 -1.682 1.033 C22 A1H81 28 A1H81 C23 C25 C 0 1 Y N N N N N -0.847 4.169 -21.792 -3.678 -0.769 0.917 C23 A1H81 29 A1H81 C24 C26 C 0 1 Y N N N N N -0.226 3.525 -22.852 -3.573 0.555 1.303 C24 A1H81 30 A1H81 C25 C27 C 0 1 Y N N N N N 1.118 3.717 -23.120 -4.669 1.391 1.209 C25 A1H81 31 A1H81 C26 C28 C 0 1 Y N N N N N 1.865 4.568 -22.321 -5.870 0.906 0.711 C26 A1H81 32 A1H81 C27 C29 C 0 1 N N N N N N 3.764 4.055 -23.712 -8.149 1.162 0.086 C27 A1H81 33 A1H81 C33 C30 C 0 1 Y N N N N N -0.086 5.019 -21.003 -4.875 -1.256 0.426 C33 A1H81 34 A1H81 C34 C31 C 0 1 Y N N N N N -3.820 7.862 -22.290 0.760 -4.325 -0.258 C34 A1H81 35 A1H81 C35 C32 C 0 1 Y N N N N N -4.150 9.053 -21.646 1.314 -5.595 -0.431 C35 A1H81 36 A1H81 C4 C33 C 0 1 Y N N N N N -5.001 11.391 -21.755 3.235 -7.165 -0.265 C4 A1H81 37 A1H81 C7 C34 C 0 1 Y N N N N N -4.169 8.900 -24.460 2.880 -3.530 0.600 C7 A1H81 38 A1H81 C8 C35 C 0 1 Y N N N N N -3.843 7.804 -23.679 1.554 -3.290 0.264 C8 A1H81 39 A1H81 C9 C36 C 0 1 N N N N N N -3.407 5.955 -25.366 1.120 -0.842 0.788 C9 A1H81 40 A1H81 N1 N4 N 0 1 Y N N N N N -3.552 6.486 -23.998 0.738 -2.176 0.316 N1 A1H81 41 A1H81 N3 N5 N 0 1 N N N N N N -6.637 5.814 -29.437 3.792 3.537 0.411 N3 A1H81 42 A1H81 N5 N6 N 0 1 N N N N N N 2.866 6.671 -26.354 -11.579 2.653 -0.554 N5 A1H81 43 A1H81 N6 N7 N 0 1 Y N N N N N -3.519 6.610 -21.762 -0.473 -3.804 -0.484 N6 A1H81 44 A1H81 O1 O2 O 0 1 N N N N N N -11.909 7.499 -30.951 7.122 9.018 0.210 O1 A1H81 45 A1H81 O2 O3 O 0 1 N N N N N N -8.685 4.518 -31.513 4.756 5.195 -1.380 O2 A1H81 46 A1H81 O3 O4 O 0 1 N N N N N N 3.201 4.743 -22.584 -6.946 1.730 0.607 O3 A1H81 47 A1H81 H1 H1 H 0 1 N N N N N N -7.988 5.869 -27.827 2.898 4.268 -1.344 H1 A1H81 48 A1H81 H2 H2 H 0 1 N N N N N N -7.955 4.328 -28.749 1.781 4.004 0.017 H2 A1H81 49 A1H81 H3 H3 H 0 1 N N N N N N -9.847 6.371 -29.292 5.074 7.342 0.814 H3 A1H81 50 A1H81 H4 H4 H 0 1 N N N N N N -3.545 14.334 -22.803 5.868 -6.223 -1.556 H4 A1H81 51 A1H81 H5 H5 H 0 1 N N N N N N -2.565 12.840 -22.624 5.326 -7.228 -2.921 H5 A1H81 52 A1H81 H6 H6 H 0 1 N N N N N N -3.763 12.973 -23.956 4.347 -5.837 -2.396 H6 A1H81 53 A1H81 H7 H7 H 0 1 N N N N N N -5.175 4.858 -24.868 0.883 0.072 -1.148 H7 A1H81 54 A1H81 H8 H8 H 0 1 N N N N N N -4.184 4.136 -26.181 2.528 -0.519 -0.809 H8 A1H81 55 A1H81 H9 H9 H 0 1 N N N N N N -7.032 6.514 -31.362 4.947 4.782 1.648 H9 A1H81 56 A1H81 H10 H10 H 0 1 N N N N N N -7.960 7.308 -30.045 3.302 5.372 1.309 H10 A1H81 57 A1H81 H11 H11 H 0 1 N N N N N N -12.905 5.844 -31.679 6.327 9.745 -1.554 H11 A1H81 58 A1H81 H12 H12 H 0 1 N N N N N N -11.313 6.193 -32.435 5.180 9.594 -0.201 H12 A1H81 59 A1H81 H13 H13 H 0 1 N N N N N N -13.134 9.140 -30.681 7.904 10.907 -0.087 H13 A1H81 60 A1H81 H14 H14 H 0 1 N N N N N N -13.403 8.203 -32.190 6.757 10.756 1.265 H14 A1H81 61 A1H81 H15 H15 H 0 1 N N N N N N -13.946 7.539 -30.612 8.404 10.098 1.417 H15 A1H81 62 A1H81 H17 H17 H 0 1 N N N N N N -4.769 10.946 -24.395 4.448 -4.955 0.692 H17 A1H81 63 A1H81 H18 H18 H 0 1 N N N N N N -6.899 4.069 -26.535 1.469 2.259 -1.703 H18 A1H81 64 A1H81 H19 H19 H 0 1 N N N N N N -5.706 3.838 -27.858 3.193 1.828 -1.592 H19 A1H81 65 A1H81 H20 H20 H 0 1 N N N N N N 4.710 4.630 -25.537 -8.920 3.054 -0.596 H20 A1H81 66 A1H81 H21 H21 H 0 1 N N N N N N 4.459 5.965 -24.363 -9.422 2.607 1.052 H21 A1H81 67 A1H81 H22 H22 H 0 1 N N N N N N 1.951 5.640 -24.783 -10.349 1.251 -1.521 H22 A1H81 68 A1H81 H23 H23 H 0 1 N N N N N N 2.436 4.632 -26.189 -10.851 0.803 0.127 H23 A1H81 69 A1H81 H24 H24 H 0 1 N N N N N N 0.963 7.389 -25.819 -12.001 4.492 -1.478 H24 A1H81 70 A1H81 H25 H25 H 0 1 N N N N N N 1.674 8.125 -27.295 -10.270 4.132 -1.271 H25 A1H81 71 A1H81 H26 H26 H 0 1 N N N N N N 1.027 6.450 -27.349 -11.212 3.286 -2.523 H26 A1H81 72 A1H81 H27 H27 H 0 1 N N N N N N 4.642 6.014 -27.264 -12.845 1.563 -1.827 H27 A1H81 73 A1H81 H28 H28 H 0 1 N N N N N N 3.135 5.663 -28.177 -13.142 1.329 -0.088 H28 A1H81 74 A1H81 H29 H29 H 0 1 N N N N N N 3.782 7.338 -28.122 -13.645 2.841 -0.881 H29 A1H81 75 A1H81 H30 H30 H 0 1 N N N N N N 1.835 5.892 -20.636 -6.905 -0.802 -0.064 H30 A1H81 76 A1H81 H31 H31 H 0 1 N N N N N N -7.533 10.961 -19.394 2.249 -8.391 2.434 H31 A1H81 77 A1H81 H32 H32 H 0 1 N N N N N N -7.396 9.911 -20.845 1.015 -7.845 1.272 H32 A1H81 78 A1H81 H33 H33 H 0 1 N N N N N N -6.160 9.813 -19.544 1.426 -9.573 1.388 H33 A1H81 79 A1H81 H34 H34 H 0 1 N N N N N N -11.848 5.187 -29.612 6.502 7.239 -1.621 H34 A1H81 80 A1H81 H35 H35 H 0 1 N N N N N N -11.082 4.286 -30.964 4.858 7.830 -1.960 H35 A1H81 81 A1H81 H36 H36 H 0 1 N N N N N N -5.240 7.367 -29.692 2.637 3.026 2.091 H36 A1H81 82 A1H81 H37 H37 H 0 1 N N N N N N -6.435 7.619 -28.375 4.361 2.595 2.202 H37 A1H81 83 A1H81 H38 H38 H 0 1 N N N N N N -4.146 5.588 -28.375 2.933 0.586 1.843 H38 A1H81 84 A1H81 H39 H39 H 0 1 N N N N N N -4.199 7.128 -27.452 4.049 0.850 0.482 H39 A1H81 85 A1H81 H40 H40 H 0 1 N N N N N N -4.135 3.850 -22.657 -1.338 -0.613 -0.445 H40 A1H81 86 A1H81 H41 H41 H 0 1 N N N N N N -2.641 4.025 -23.639 -2.305 -1.957 -1.097 H41 A1H81 87 A1H81 H42 H42 H 0 1 N N N N N N -2.614 4.563 -20.651 -2.824 -2.703 1.211 H42 A1H81 88 A1H81 H43 H43 H 0 1 N N N N N N -2.488 2.890 -21.292 -1.857 -1.358 1.863 H43 A1H81 89 A1H81 H44 H44 H 0 1 N N N N N N -0.802 2.861 -23.480 -2.637 0.933 1.686 H44 A1H81 90 A1H81 H45 H45 H 0 1 N N N N N N 1.583 3.205 -23.949 -4.587 2.425 1.511 H45 A1H81 91 A1H81 H46 H46 H 0 1 N N N N N N 3.062 3.285 -24.066 -8.470 0.340 0.727 H46 A1H81 92 A1H81 H47 H47 H 0 1 N N N N N N 4.713 3.580 -23.423 -7.968 0.788 -0.921 H47 A1H81 93 A1H81 H48 H48 H 0 1 N N N N N N -0.551 5.530 -20.173 -4.954 -2.290 0.125 H48 A1H81 94 A1H81 H49 H49 H 0 1 N N N N N N -4.121 9.121 -20.569 0.715 -6.400 -0.832 H49 A1H81 95 A1H81 H50 H50 H 0 1 N N N N N N -4.159 8.840 -25.538 3.488 -2.731 0.998 H50 A1H81 96 A1H81 H51 H51 H 0 1 N N N N N N -2.486 5.356 -25.417 1.893 -0.934 1.551 H51 A1H81 97 A1H81 H52 H52 H 0 1 N N N N N N -3.335 6.799 -26.068 0.248 -0.344 1.212 H52 A1H81 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H81 O2 C14 DOUB N N 1 A1H81 C16 O1 SING N N 2 A1H81 C16 C15 SING N N 3 A1H81 C17 O1 SING N N 4 A1H81 C14 C13 SING N N 5 A1H81 C14 N4 SING N N 6 A1H81 C15 N4 SING N N 7 A1H81 C13 N3 SING N N 8 A1H81 N3 C18 SING N N 9 A1H81 N3 C12 SING N N 10 A1H81 C18 C19 SING N N 11 A1H81 C12 C11 SING N N 12 A1H81 C19 N2 SING N N 13 A1H81 C31 N5 SING N N 14 A1H81 C11 N2 SING N N 15 A1H81 N2 C10 SING N N 16 A1H81 C30 N5 SING N N 17 A1H81 N5 C29 SING N N 18 A1H81 C10 C9 SING N N 19 A1H81 C29 C28 SING N N 20 A1H81 C9 N1 SING N N 21 A1H81 C28 C27 SING N N 22 A1H81 C7 C6 DOUB Y N 23 A1H81 C7 C8 SING Y N 24 A1H81 N1 C8 SING Y N 25 A1H81 N1 C20 SING Y N 26 A1H81 C6 C5 SING Y N 27 A1H81 C27 O3 SING N N 28 A1H81 C8 C34 DOUB Y N 29 A1H81 C25 C24 DOUB Y N 30 A1H81 C25 C26 SING Y N 31 A1H81 C3 C2 SING N N 32 A1H81 C24 C23 SING Y N 33 A1H81 C20 C21 SING N N 34 A1H81 C20 N6 DOUB Y N 35 A1H81 C21 C22 SING N N 36 A1H81 O3 C26 SING N N 37 A1H81 C5 C4 SING N N 38 A1H81 C5 C35 DOUB Y N 39 A1H81 C26 C32 DOUB Y N 40 A1H81 C34 N6 SING Y N 41 A1H81 C34 C35 SING Y N 42 A1H81 C2 C4 DOUB Y N 43 A1H81 C2 O SING Y N 44 A1H81 C23 C22 SING N N 45 A1H81 C23 C33 DOUB Y N 46 A1H81 C4 C1 SING Y N 47 A1H81 O N SING Y N 48 A1H81 C32 C33 SING Y N 49 A1H81 C1 N DOUB Y N 50 A1H81 C1 C SING N N 51 A1H81 C12 H1 SING N N 52 A1H81 C12 H2 SING N N 53 A1H81 N4 H3 SING N N 54 A1H81 C3 H4 SING N N 55 A1H81 C3 H5 SING N N 56 A1H81 C3 H6 SING N N 57 A1H81 C10 H7 SING N N 58 A1H81 C10 H8 SING N N 59 A1H81 C13 H9 SING N N 60 A1H81 C13 H10 SING N N 61 A1H81 C16 H11 SING N N 62 A1H81 C16 H12 SING N N 63 A1H81 C17 H13 SING N N 64 A1H81 C17 H14 SING N N 65 A1H81 C17 H15 SING N N 66 A1H81 C6 H17 SING N N 67 A1H81 C11 H18 SING N N 68 A1H81 C11 H19 SING N N 69 A1H81 C28 H20 SING N N 70 A1H81 C28 H21 SING N N 71 A1H81 C29 H22 SING N N 72 A1H81 C29 H23 SING N N 73 A1H81 C30 H24 SING N N 74 A1H81 C30 H25 SING N N 75 A1H81 C30 H26 SING N N 76 A1H81 C31 H27 SING N N 77 A1H81 C31 H28 SING N N 78 A1H81 C31 H29 SING N N 79 A1H81 C32 H30 SING N N 80 A1H81 C H31 SING N N 81 A1H81 C H32 SING N N 82 A1H81 C H33 SING N N 83 A1H81 C15 H34 SING N N 84 A1H81 C15 H35 SING N N 85 A1H81 C18 H36 SING N N 86 A1H81 C18 H37 SING N N 87 A1H81 C19 H38 SING N N 88 A1H81 C19 H39 SING N N 89 A1H81 C21 H40 SING N N 90 A1H81 C21 H41 SING N N 91 A1H81 C22 H42 SING N N 92 A1H81 C22 H43 SING N N 93 A1H81 C24 H44 SING N N 94 A1H81 C25 H45 SING N N 95 A1H81 C27 H46 SING N N 96 A1H81 C27 H47 SING N N 97 A1H81 C33 H48 SING N N 98 A1H81 C35 H49 SING N N 99 A1H81 C7 H50 SING N N 100 A1H81 C9 H51 SING N N 101 A1H81 C9 H52 SING N N 102 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H81 InChI InChI 1.06 "InChI=1S/C36H51N7O4/c1-27-36(28(2)47-39-27)30-10-13-33-32(25-30)38-34(14-9-29-7-11-31(12-8-29)46-23-6-16-40(3)4)43(33)22-21-41-17-19-42(20-18-41)26-35(44)37-15-24-45-5/h7-8,10-13,25H,6,9,14-24,26H2,1-5H3,(H,37,44)" A1H81 InChIKey InChI 1.06 ZLYGYWHWWJLPIA-UHFFFAOYSA-N A1H81 SMILES_CANONICAL CACTVS 3.385 "COCCNC(=O)CN1CCN(CC1)CCn2c(CCc3ccc(OCCCN(C)C)cc3)nc4cc(ccc24)c5c(C)onc5C" A1H81 SMILES CACTVS 3.385 "COCCNC(=O)CN1CCN(CC1)CCn2c(CCc3ccc(OCCCN(C)C)cc3)nc4cc(ccc24)c5c(C)onc5C" A1H81 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCOC)CCc5ccc(cc5)OCCCN(C)C" A1H81 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCOC)CCc5ccc(cc5)OCCCN(C)C" # _pdbx_chem_comp_identifier.comp_id A1H81 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]-~{N}-(2-methoxyethyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H81 "Create component" 2024-04-22 PDBE A1H81 "Modify name" 2024-04-30 PDBE A1H81 "Initial release" 2024-09-11 RCSB #