data_A1H8B # _chem_comp.id A1H8B _chem_comp.name "(3~{S})-2-[(5-azanyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H21 F2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-12 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H8B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EYW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H8B C1 C1 C 0 1 Y N N N N N 22.300 86.227 11.441 4.688 3.206 0.374 C1 A1H8B 1 A1H8B C2 C2 C 0 1 Y N N N N N 22.875 85.306 10.607 4.470 3.392 -0.980 C2 A1H8B 2 A1H8B C3 C3 C 0 1 Y N N N N N 24.193 85.356 10.242 3.201 3.224 -1.506 C3 A1H8B 3 A1H8B C7 C4 C 0 1 N N N N N N 25.977 89.652 9.978 1.822 0.004 2.629 C7 A1H8B 4 A1H8B C8 C5 C 0 1 N N N N N N 27.296 90.295 9.572 1.102 -1.363 2.595 C8 A1H8B 5 A1H8B C9 C6 C 0 1 N N S N N N 28.378 89.390 10.204 0.506 -1.365 1.176 C9 A1H8B 6 A1H8B C10 C7 C 0 1 N N N N N N 27.634 88.734 11.391 0.386 0.089 0.804 C10 A1H8B 7 A1H8B C11 C8 C 0 1 Y N N N N N 28.927 88.351 9.252 1.398 -2.106 0.222 C11 A1H8B 8 A1H8B C12 C9 C 0 1 Y N N N N N 28.271 87.403 8.481 2.705 -1.948 -0.175 C12 A1H8B 9 A1H8B C13 C10 C 0 1 Y N N N N N 28.997 86.561 7.654 3.261 -2.819 -1.097 C13 A1H8B 10 A1H8B C14 C11 C 0 1 Y N N N N N 30.366 86.700 7.617 2.503 -3.853 -1.622 C14 A1H8B 11 A1H8B C15 C12 C 0 1 Y N N N N N 31.055 87.633 8.359 1.189 -4.022 -1.230 C15 A1H8B 12 A1H8B C16 C13 C 0 1 Y N N N N N 30.304 88.470 9.181 0.623 -3.147 -0.302 C16 A1H8B 13 A1H8B C19 C14 C 0 1 Y N N N N N 29.699 92.505 11.073 -2.793 -0.662 1.149 C19 A1H8B 14 A1H8B C20 C15 C 0 1 Y N N N N N 30.778 93.276 10.677 -3.845 -0.984 0.377 C20 A1H8B 15 A1H8B C21 C16 C 0 1 Y N N N N N 30.262 94.543 10.256 -4.351 0.262 -0.203 C21 A1H8B 16 A1H8B C22 C17 C 0 1 Y N N N N N 28.878 94.518 10.424 -3.520 1.282 0.293 C22 A1H8B 17 A1H8B C24 C18 C 0 1 Y N N N N N 28.743 96.729 9.604 -4.812 2.851 -0.949 C24 A1H8B 18 A1H8B F1 F1 F 0 1 N N N N N N 22.101 84.300 10.118 5.496 3.739 -1.789 F1 A1H8B 19 A1H8B C4 C19 C 0 1 Y N N N N N 24.973 86.385 10.743 2.152 2.870 -0.678 C4 A1H8B 20 A1H8B C5 C20 C 0 1 Y N N N N N 24.436 87.345 11.593 2.371 2.685 0.674 C5 A1H8B 21 A1H8B C C21 C 0 1 Y N N N N N 23.093 87.250 11.934 3.638 2.852 1.200 C A1H8B 22 A1H8B C6 C22 C 0 1 N N N N N N 25.291 88.464 12.140 1.226 2.299 1.576 C6 A1H8B 23 A1H8B N N1 N 0 1 N N N N N N 26.317 88.925 11.204 1.127 0.839 1.641 N A1H8B 24 A1H8B O O1 O 0 1 N N N N N N 28.148 88.172 12.338 -0.280 0.521 -0.114 O A1H8B 25 A1H8B N1 N2 N 0 1 N N N N N N 29.610 90.074 10.640 -0.791 -2.034 1.157 N1 A1H8B 26 A1H8B C17 C23 C 0 1 N N N N N N 30.741 89.558 10.085 -0.723 -3.070 0.299 C17 A1H8B 27 A1H8B O1 O2 O 0 1 N N N N N N 31.872 89.954 10.299 -1.638 -3.831 0.055 O1 A1H8B 28 A1H8B F F2 F 0 1 N N N N N N 31.079 85.873 6.808 3.052 -4.701 -2.520 F A1H8B 29 A1H8B C18 C24 C 0 1 N N N N N N 29.634 91.131 11.638 -1.968 -1.645 1.939 C18 A1H8B 30 A1H8B N2 N3 N 0 1 Y N N N N N 28.574 93.270 10.935 -2.580 0.686 1.107 N2 A1H8B 31 A1H8B C23 C25 C 0 1 Y N N N N N 28.089 95.613 10.100 -3.761 2.599 -0.091 C23 A1H8B 32 A1H8B C25 C26 C 0 1 Y N N N N N 30.161 96.706 9.452 -5.605 1.794 -1.397 C25 A1H8B 33 A1H8B N4 N4 N 0 1 N N N N N N 30.823 97.773 8.971 -6.664 2.052 -2.262 N4 A1H8B 34 A1H8B N3 N5 N 0 1 Y N N N N N 30.913 95.622 9.775 -5.358 0.551 -1.025 N3 A1H8B 35 A1H8B H1 H1 H 0 1 N N N N N N 21.256 86.158 11.707 5.679 3.333 0.784 H1 A1H8B 36 A1H8B H2 H2 H 0 1 N N N N N N 24.614 84.613 9.581 3.030 3.369 -2.563 H2 A1H8B 37 A1H8B H3 H3 H 0 1 N N N N N N 25.210 90.416 10.173 1.742 0.448 3.621 H3 A1H8B 38 A1H8B H4 H4 H 0 1 N N N N N N 25.618 88.963 9.199 2.870 -0.113 2.352 H4 A1H8B 39 A1H8B H5 H5 H 0 1 N N N N N N 27.398 90.316 8.477 1.811 -2.182 2.722 H5 A1H8B 40 A1H8B H6 H6 H 0 1 N N N N N N 27.367 91.319 9.966 0.316 -1.410 3.349 H6 A1H8B 41 A1H8B H7 H7 H 0 1 N N N N N N 27.195 87.321 8.525 3.299 -1.143 0.232 H7 A1H8B 42 A1H8B H8 H8 H 0 1 N N N N N N 28.501 85.814 7.053 4.287 -2.691 -1.408 H8 A1H8B 43 A1H8B H9 H9 H 0 1 N N N N N N 32.131 87.712 8.306 0.600 -4.828 -1.642 H9 A1H8B 44 A1H8B H10 H10 H 0 1 N N N N N N 31.816 92.977 10.684 -4.243 -1.975 0.214 H10 A1H8B 45 A1H8B H11 H11 H 0 1 N N N N N N 28.182 97.612 9.334 -5.025 3.862 -1.266 H11 A1H8B 46 A1H8B H12 H12 H 0 1 N N N N N N 26.016 86.443 10.469 1.162 2.738 -1.088 H12 A1H8B 47 A1H8B H13 H13 H 0 1 N N N N N N 22.660 87.986 12.595 3.809 2.703 2.256 H13 A1H8B 48 A1H8B H14 H14 H 0 1 N N N N N N 25.788 88.107 13.054 1.402 2.697 2.576 H14 A1H8B 49 A1H8B H15 H15 H 0 1 N N N N N N 24.637 89.314 12.386 0.298 2.709 1.180 H15 A1H8B 50 A1H8B H16 H16 H 0 1 N N N N N N 28.721 91.051 12.246 -1.647 -1.182 2.872 H16 A1H8B 51 A1H8B H17 H17 H 0 1 N N N N N N 30.515 90.980 12.279 -2.566 -2.529 2.159 H17 A1H8B 52 A1H8B H18 H18 H 0 1 N N N N N N 27.651 92.966 11.173 -1.877 1.155 1.583 H18 A1H8B 53 A1H8B H19 H19 H 0 1 N N N N N N 27.017 95.596 10.228 -3.140 3.404 0.273 H19 A1H8B 54 A1H8B H20 H20 H 0 1 N N N N N N 31.801 97.570 8.934 -6.846 2.960 -2.549 H20 A1H8B 55 A1H8B H21 H21 H 0 1 N N N N N N 30.492 97.984 8.051 -7.221 1.323 -2.578 H21 A1H8B 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H8B F C14 SING N N 1 A1H8B C14 C13 DOUB Y N 2 A1H8B C14 C15 SING Y N 3 A1H8B C13 C12 SING Y N 4 A1H8B C15 C16 DOUB Y N 5 A1H8B C12 C11 DOUB Y N 6 A1H8B N4 C25 SING N N 7 A1H8B C16 C11 SING Y N 8 A1H8B C16 C17 SING N N 9 A1H8B C11 C9 SING N N 10 A1H8B C25 C24 DOUB Y N 11 A1H8B C25 N3 SING Y N 12 A1H8B C8 C7 SING N N 13 A1H8B C8 C9 SING N N 14 A1H8B C24 C23 SING Y N 15 A1H8B N3 C21 DOUB Y N 16 A1H8B C7 N SING N N 17 A1H8B C17 O1 DOUB N N 18 A1H8B C17 N1 SING N N 19 A1H8B C23 C22 DOUB Y N 20 A1H8B F1 C2 SING N N 21 A1H8B C9 N1 SING N N 22 A1H8B C9 C10 SING N N 23 A1H8B C3 C2 DOUB Y N 24 A1H8B C3 C4 SING Y N 25 A1H8B C21 C22 SING Y N 26 A1H8B C21 C20 SING Y N 27 A1H8B C22 N2 SING Y N 28 A1H8B C2 C1 SING Y N 29 A1H8B N1 C18 SING N N 30 A1H8B C20 C19 DOUB Y N 31 A1H8B C4 C5 DOUB Y N 32 A1H8B N2 C19 SING Y N 33 A1H8B C19 C18 SING N N 34 A1H8B N C10 SING N N 35 A1H8B N C6 SING N N 36 A1H8B C10 O DOUB N N 37 A1H8B C1 C DOUB Y N 38 A1H8B C5 C SING Y N 39 A1H8B C5 C6 SING N N 40 A1H8B C1 H1 SING N N 41 A1H8B C3 H2 SING N N 42 A1H8B C7 H3 SING N N 43 A1H8B C7 H4 SING N N 44 A1H8B C8 H5 SING N N 45 A1H8B C8 H6 SING N N 46 A1H8B C12 H7 SING N N 47 A1H8B C13 H8 SING N N 48 A1H8B C15 H9 SING N N 49 A1H8B C20 H10 SING N N 50 A1H8B C24 H11 SING N N 51 A1H8B C4 H12 SING N N 52 A1H8B C H13 SING N N 53 A1H8B C6 H14 SING N N 54 A1H8B C6 H15 SING N N 55 A1H8B C18 H16 SING N N 56 A1H8B C18 H17 SING N N 57 A1H8B N2 H18 SING N N 58 A1H8B C23 H19 SING N N 59 A1H8B N4 H20 SING N N 60 A1H8B N4 H21 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H8B InChI InChI 1.06 "InChI=1S/C26H21F2N5O2/c27-16-3-1-15(2-4-16)13-32-10-9-26(25(32)35)20-6-5-17(28)11-19(20)24(34)33(26)14-18-12-22-21(30-18)7-8-23(29)31-22/h1-8,11-12,30H,9-10,13-14H2,(H2,29,31)/t26-/m0/s1" A1H8B InChIKey InChI 1.06 TWPCXFCEZJPTDU-SANMLTNESA-N A1H8B SMILES_CANONICAL CACTVS 3.385 "Nc1ccc2[nH]c(CN3C(=O)c4cc(F)ccc4[C@]35CCN(Cc6ccc(F)cc6)C5=O)cc2n1" A1H8B SMILES CACTVS 3.385 "Nc1ccc2[nH]c(CN3C(=O)c4cc(F)ccc4[C]35CCN(Cc6ccc(F)cc6)C5=O)cc2n1" A1H8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CC[C@@]3(C2=O)c4ccc(cc4C(=O)N3Cc5cc6c([nH]5)ccc(n6)N)F)F" A1H8B SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC3(C2=O)c4ccc(cc4C(=O)N3Cc5cc6c([nH]5)ccc(n6)N)F)F" # _pdbx_chem_comp_identifier.comp_id A1H8B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-2-[(5-azanyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H8B "Create component" 2024-04-12 PDBE A1H8B "Initial release" 2024-08-14 RCSB #