data_A1H9D # _chem_comp.id A1H9D _chem_comp.name "~{tert}-butyl ~{N}-[4-[(2~{S})-1-[[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-3-oxidanylidene-pyrazin-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H34 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-24 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F2X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H9D N1 N1 N 0 1 N N N N N N -8.554 2.399 21.797 0.906 -0.951 -0.266 N1 A1H9D 1 A1H9D N3 N2 N 0 1 N N N N N N -8.176 1.144 18.339 4.194 0.715 -0.493 N3 A1H9D 2 A1H9D C4 C1 C 0 1 N N N N N N -7.950 1.828 20.681 1.877 -0.140 -0.742 C4 A1H9D 3 A1H9D C5 C2 C 0 1 N N N N N N -8.808 0.941 17.129 5.373 0.740 0.159 C5 A1H9D 4 A1H9D C6 C3 C 0 1 N N S N N N -7.776 2.509 23.047 -0.394 -1.025 -0.938 C6 A1H9D 5 A1H9D C7 C4 C 0 1 N N N N N N -7.793 1.165 23.744 -1.480 -0.614 0.023 C7 A1H9D 6 A1H9D C8 C5 C 0 1 N N N N N N -8.253 3.629 23.978 -0.645 -2.459 -1.408 C8 A1H9D 7 A1H9D C10 C6 C 0 1 N N N N N N -6.699 5.614 23.354 0.230 -4.192 -3.161 C10 A1H9D 8 A1H9D C13 C7 C 0 1 N N R N N N -6.622 -0.035 26.693 -4.426 -1.453 1.207 C13 A1H9D 9 A1H9D C15 C8 C 0 1 N N S N N N -6.124 -1.933 23.305 -4.317 1.820 -0.817 C15 A1H9D 10 A1H9D C17 C9 C 0 1 N N N N N N -6.948 -3.858 22.067 -4.218 4.169 -0.340 C17 A1H9D 11 A1H9D C20 C10 C 0 1 N N N N N N -8.085 -0.018 14.918 7.610 1.508 0.472 C20 A1H9D 12 A1H9D C21 C11 C 0 1 N N N N N N -9.472 -0.416 14.458 8.182 0.089 0.467 C21 A1H9D 13 A1H9D C22 C12 C 0 1 N N N N N N -7.085 -1.098 14.552 8.615 2.466 -0.172 C22 A1H9D 14 A1H9D C1 C13 C 0 1 N N N N N N -9.859 2.802 21.739 1.154 -1.703 0.842 C1 A1H9D 15 A1H9D C2 C14 C 0 1 N N N N N N -10.532 2.677 20.569 2.351 -1.646 1.465 C2 A1H9D 16 A1H9D N2 N3 N 0 1 N N N N N N -9.976 2.143 19.466 3.332 -0.859 1.026 N2 A1H9D 17 A1H9D C3 C15 C 0 1 N N N N N N -8.704 1.728 19.508 3.164 -0.105 -0.039 C3 A1H9D 18 A1H9D O1 O1 O 0 1 N N N N N N -8.032 0.113 16.392 6.369 1.533 -0.280 O1 A1H9D 19 A1H9D O2 O2 O 0 1 N N N N N N -8.772 0.446 23.639 -1.196 -0.292 1.158 O2 A1H9D 20 A1H9D N4 N4 N 0 1 N N N N N N -6.736 0.770 24.441 -2.767 -0.605 -0.377 N4 A1H9D 21 A1H9D C9 C16 C 0 1 N N N N N N -8.058 4.988 23.373 0.384 -2.832 -2.477 C9 A1H9D 22 A1H9D C11 C17 C 0 1 N N N N N N -7.758 6.156 24.258 1.359 -3.967 -2.153 C11 A1H9D 23 A1H9D C12 C18 C 0 1 N N S N N N -6.749 -0.452 25.226 -3.822 -0.206 0.557 C12 A1H9D 24 A1H9D C14 C19 C 0 1 N N N N N N -5.714 -1.451 24.704 -4.913 0.554 -0.200 C14 A1H9D 25 A1H9D C16 C20 C 0 1 N N N N N N -7.263 -2.939 23.267 -3.867 2.802 0.289 C16 A1H9D 26 A1H9D N5 N5 N 0 1 N N N N N N -5.514 -3.664 21.867 -5.299 3.895 -1.293 N5 A1H9D 27 A1H9D C18 C21 C 0 1 N N N N N N -5.015 -2.631 22.538 -5.374 2.584 -1.583 C18 A1H9D 28 A1H9D O3 O3 O 0 1 N N N N N N -3.858 -2.286 22.532 -6.173 2.087 -2.348 O3 A1H9D 29 A1H9D O4 O4 O 0 1 N N N N N N -7.578 0.979 26.904 -3.386 -2.235 1.797 O4 A1H9D 30 A1H9D C19 C22 C 0 1 N N N N N N -6.929 -1.181 27.625 -5.409 -1.038 2.272 C19 A1H9D 31 A1H9D N6 N6 N 0 1 N N N N N N -7.987 -1.051 28.570 -6.594 -0.502 1.923 N6 A1H9D 32 A1H9D O5 O5 O 0 1 N N N N N N -6.343 -2.215 27.573 -5.132 -1.188 3.443 O5 A1H9D 33 A1H9D O6 O6 O 0 1 N N N N N N -9.865 1.425 16.785 5.537 0.047 1.144 O6 A1H9D 34 A1H9D C23 C23 C 0 1 N N N N N N -7.667 1.319 14.344 7.342 1.945 1.914 C23 A1H9D 35 A1H9D O7 O7 O 0 1 N N N N N N -6.776 1.445 20.789 1.688 0.546 -1.732 O7 A1H9D 36 A1H9D H3 H1 H 0 1 N N N N N N -7.225 0.839 18.393 4.063 1.268 -1.279 H3 A1H9D 37 A1H9D H4 H2 H 0 1 N N N N N N -6.732 2.729 22.779 -0.398 -0.355 -1.797 H4 A1H9D 38 A1H9D H6 H3 H 0 1 N N N N N N -9.323 3.484 24.187 -0.553 -3.140 -0.562 H6 A1H9D 39 A1H9D H5 H4 H 0 1 N N N N N N -7.685 3.575 24.918 -1.648 -2.534 -1.827 H5 A1H9D 40 A1H9D H9 H5 H 0 1 N N N N N N -5.839 5.074 23.776 -0.604 -4.821 -2.850 H9 A1H9D 41 A1H9D H10 H6 H 0 1 N N N N N N -6.373 6.195 22.478 0.502 -4.260 -4.214 H10 A1H9D 42 A1H9D H14 H7 H 0 1 N N N N N N -5.603 0.334 26.882 -4.940 -2.045 0.449 H14 A1H9D 43 A1H9D H17 H8 H 0 1 N N N N N N -6.433 -1.051 22.725 -3.480 1.571 -1.469 H17 A1H9D 44 A1H9D H20 H9 H 0 1 N N N N N N -7.175 -4.908 22.304 -4.559 4.862 0.429 H20 A1H9D 45 A1H9D H21 H10 H 0 1 N N N N N N -7.516 -3.552 21.176 -3.352 4.579 -0.860 H21 A1H9D 46 A1H9D H28 H11 H 0 1 N N N N N N -9.484 -0.506 13.362 9.115 0.071 1.031 H28 A1H9D 47 A1H9D H27 H12 H 0 1 N N N N N N -9.744 -1.382 14.908 7.466 -0.592 0.926 H27 A1H9D 48 A1H9D H29 H13 H 0 1 N N N N N N -10.196 0.351 14.770 8.373 -0.222 -0.560 H29 A1H9D 49 A1H9D H32 H14 H 0 1 N N N N N N -7.081 -1.240 13.461 8.806 2.154 -1.199 H32 A1H9D 50 A1H9D H31 H15 H 0 1 N N N N N N -6.081 -0.797 14.886 8.208 3.477 -0.169 H31 A1H9D 51 A1H9D H30 H16 H 0 1 N N N N N N -7.368 -2.041 15.043 9.548 2.447 0.392 H30 A1H9D 52 A1H9D H1 H17 H 0 1 N N N N N N -10.346 3.213 22.611 0.383 -2.353 1.229 H1 A1H9D 53 A1H9D H2 H18 H 0 1 N N N N N N -11.555 3.020 20.520 2.518 -2.253 2.342 H2 A1H9D 54 A1H9D H7 H19 H 0 1 N N N N N N -5.907 1.329 24.426 -2.994 -0.863 -1.284 H7 A1H9D 55 A1H9D H8 H20 H 0 1 N N N N N N -8.690 5.209 22.500 0.757 -2.005 -3.080 H8 A1H9D 56 A1H9D H11 H21 H 0 1 N N N N N N -7.677 6.015 25.346 1.267 -4.446 -1.178 H11 A1H9D 57 A1H9D H12 H22 H 0 1 N N N N N N -8.212 7.136 24.048 2.374 -3.885 -2.543 H12 A1H9D 58 A1H9D H13 H23 H 0 1 N N N N N N -7.737 -0.921 25.109 -3.400 0.437 1.329 H13 A1H9D 59 A1H9D H16 H24 H 0 1 N N N N N N -4.730 -0.963 24.649 -5.711 0.827 0.490 H16 A1H9D 60 A1H9D H15 H25 H 0 1 N N N N N N -5.659 -2.312 25.387 -5.316 -0.080 -0.989 H15 A1H9D 61 A1H9D H18 H26 H 0 1 N N N N N N -7.296 -3.520 24.200 -4.431 2.640 1.208 H18 A1H9D 62 A1H9D H19 H27 H 0 1 N N N N N N -8.225 -2.427 23.119 -2.795 2.720 0.471 H19 A1H9D 63 A1H9D H22 H28 H 0 1 N N N N N N -4.959 -4.254 21.280 -5.885 4.572 -1.666 H22 A1H9D 64 A1H9D H23 H29 H 0 1 N N N N N N -7.536 1.271 27.807 -2.716 -2.537 1.168 H23 A1H9D 65 A1H9D H24 H30 H 0 1 N N N N N N -8.220 -1.818 29.168 -6.851 -0.457 0.988 H24 A1H9D 66 A1H9D H25 H31 H 0 1 N N N N N N -8.496 -0.193 28.635 -7.192 -0.159 2.606 H25 A1H9D 67 A1H9D H35 H32 H 0 1 N N N N N N -7.691 1.271 13.245 8.275 1.927 2.478 H35 A1H9D 68 A1H9D H33 H33 H 0 1 N N N N N N -8.359 2.100 14.692 6.935 2.956 1.917 H33 A1H9D 69 A1H9D H34 H34 H 0 1 N N N N N N -6.647 1.559 14.678 6.626 1.263 2.373 H34 A1H9D 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H9D N1 C1 SING N N 1 A1H9D C1 C2 DOUB N N 2 A1H9D C2 N2 SING N N 3 A1H9D N2 C3 DOUB N N 4 A1H9D C3 C4 SING N N 5 A1H9D N1 C4 SING N N 6 A1H9D C3 N3 SING N N 7 A1H9D N3 C5 SING N N 8 A1H9D C5 O1 SING N N 9 A1H9D N1 C6 SING N N 10 A1H9D C6 C7 SING N N 11 A1H9D C6 C8 SING N N 12 A1H9D C7 O2 DOUB N N 13 A1H9D C7 N4 SING N N 14 A1H9D C8 C9 SING N N 15 A1H9D C9 C10 SING N N 16 A1H9D C10 C11 SING N N 17 A1H9D C9 C11 SING N N 18 A1H9D N4 C12 SING N N 19 A1H9D C12 C13 SING N N 20 A1H9D C12 C14 SING N N 21 A1H9D C14 C15 SING N N 22 A1H9D C15 C16 SING N N 23 A1H9D C16 C17 SING N N 24 A1H9D C17 N5 SING N N 25 A1H9D N5 C18 SING N N 26 A1H9D C15 C18 SING N N 27 A1H9D C18 O3 DOUB N N 28 A1H9D C13 O4 SING N N 29 A1H9D C13 C19 SING N N 30 A1H9D C19 N6 SING N N 31 A1H9D C19 O5 DOUB N N 32 A1H9D O1 C20 SING N N 33 A1H9D C5 O6 DOUB N N 34 A1H9D C20 C21 SING N N 35 A1H9D C20 C22 SING N N 36 A1H9D C20 C23 SING N N 37 A1H9D C4 O7 DOUB N N 38 A1H9D N3 H3 SING N N 39 A1H9D C6 H4 SING N N 40 A1H9D C8 H6 SING N N 41 A1H9D C8 H5 SING N N 42 A1H9D C10 H9 SING N N 43 A1H9D C10 H10 SING N N 44 A1H9D C13 H14 SING N N 45 A1H9D C15 H17 SING N N 46 A1H9D C17 H20 SING N N 47 A1H9D C17 H21 SING N N 48 A1H9D C21 H28 SING N N 49 A1H9D C21 H27 SING N N 50 A1H9D C21 H29 SING N N 51 A1H9D C22 H32 SING N N 52 A1H9D C22 H31 SING N N 53 A1H9D C22 H30 SING N N 54 A1H9D C1 H1 SING N N 55 A1H9D C2 H2 SING N N 56 A1H9D N4 H7 SING N N 57 A1H9D C9 H8 SING N N 58 A1H9D C11 H11 SING N N 59 A1H9D C11 H12 SING N N 60 A1H9D C12 H13 SING N N 61 A1H9D C14 H16 SING N N 62 A1H9D C14 H15 SING N N 63 A1H9D C16 H18 SING N N 64 A1H9D C16 H19 SING N N 65 A1H9D N5 H22 SING N N 66 A1H9D O4 H23 SING N N 67 A1H9D N6 H24 SING N N 68 A1H9D N6 H25 SING N N 69 A1H9D C23 H35 SING N N 70 A1H9D C23 H33 SING N N 71 A1H9D C23 H34 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H9D InChI InChI 1.06 "InChI=1S/C23H34N6O7/c1-23(2,3)36-22(35)28-18-21(34)29(9-8-25-18)15(10-12-4-5-12)20(33)27-14(16(30)17(24)31)11-13-6-7-26-19(13)32/h8-9,12-16,30H,4-7,10-11H2,1-3H3,(H2,24,31)(H,26,32)(H,27,33)(H,25,28,35)/t13-,14?,15-,16+/m0/s1" A1H9D InChIKey InChI 1.06 SNPLFEOZVQERMH-HNSVSWJLSA-N A1H9D SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)NC1=NC=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(N)=O)C1=O" A1H9D SMILES CACTVS 3.385 "CC(C)(C)OC(=O)NC1=NC=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C1=O" A1H9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=NC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)N)O" A1H9D SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=NC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O" # _pdbx_chem_comp_identifier.comp_id A1H9D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[4-[(2~{S})-1-[[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-3-oxidanylidene-pyrazin-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H9D "Create component" 2024-04-24 PDBE A1H9D "Modify PCM" 2024-09-27 PDBE A1H9D "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H9D _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #