data_A1H9Y # _chem_comp.id A1H9Y _chem_comp.name "(2R,3R)-3-[[(2S)-3-cyclopropyl-2-[3-(2-methylpropanoylamino)-2-oxidanylidene-pyridin-1-yl]propanoyl]amino]-N-methyl-2-oxidanyl-4-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-29 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.565 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H9Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F39 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H9Y N1 N1 N 0 1 N N N N N N -15.380 -25.936 -1.001 -1.711 0.928 0.280 N1 A1H9Y 1 A1H9Y N3 N2 N 0 1 N N N N N N -13.543 -27.536 1.628 1.638 0.393 -1.176 N3 A1H9Y 2 A1H9Y C4 C1 C 0 1 N N N N N N -15.614 -24.640 -0.560 -2.885 0.354 -0.042 C4 A1H9Y 3 A1H9Y C5 C2 C 0 1 N N N N N N -15.294 -26.243 -2.334 -1.459 1.329 1.554 C5 A1H9Y 4 A1H9Y C6 C3 C 0 1 N N S N N N -15.248 -26.999 0.003 -0.689 1.116 -0.753 C6 A1H9Y 5 A1H9Y C7 C4 C 0 1 N N N N N N -13.793 -27.327 0.325 0.559 0.364 -0.369 C7 A1H9Y 6 A1H9Y C8 C5 C 0 1 N N R N N N -12.484 -28.344 2.240 2.852 -0.337 -0.802 C8 A1H9Y 7 A1H9Y C10 C6 C 0 1 N N N N N N -17.545 -27.957 -0.153 -1.602 3.351 -1.396 C10 A1H9Y 8 A1H9Y C13 C7 C 0 1 N N R N N N -12.695 -29.824 1.825 3.652 -0.676 -2.062 C13 A1H9Y 9 A1H9Y C15 C8 C 0 1 N N N N N N -11.425 -30.674 1.715 4.835 -1.532 -1.691 C15 A1H9Y 10 A1H9Y C17 C9 C 0 1 N N N N N N -9.775 -25.594 1.536 3.738 1.742 2.344 C17 A1H9Y 11 A1H9Y C20 C10 C 0 1 N N N N N N -16.620 -21.307 -1.697 -5.135 -1.679 0.125 C20 A1H9Y 12 A1H9Y C21 C11 C 0 1 N N N N N N -16.592 -19.979 -0.964 -6.459 -2.353 -0.126 C21 A1H9Y 13 A1H9Y C22 C12 C 0 1 N N N N N N -17.942 -19.700 -0.312 -7.267 -1.532 -1.133 C22 A1H9Y 14 A1H9Y C24 C13 C 0 1 N N N N N N -10.331 -32.457 0.439 5.792 -3.601 -0.829 C24 A1H9Y 15 A1H9Y C1 C14 C 0 1 N N N N N N -15.443 -25.298 -3.282 -2.384 1.166 2.528 C1 A1H9Y 16 A1H9Y C2 C15 C 0 1 N N N N N N -15.681 -23.970 -2.912 -3.621 0.578 2.229 C2 A1H9Y 17 A1H9Y C3 C16 C 0 1 N N N N N N -15.794 -23.639 -1.592 -3.872 0.164 0.949 C3 A1H9Y 18 A1H9Y N2 N3 N 0 1 N N N N N N -16.026 -22.357 -1.064 -5.101 -0.427 0.623 N2 A1H9Y 19 A1H9Y C9 C17 C 0 1 N N N N N N -16.081 -28.225 -0.377 -0.367 2.606 -0.886 C9 A1H9Y 20 A1H9Y C11 C18 C 0 1 N N N N N N -18.343 -27.180 -1.154 -1.520 4.877 -1.486 C11 A1H9Y 21 A1H9Y C12 C19 C 0 1 N N N N N N -18.593 -28.641 -0.977 -1.501 4.034 -2.762 C12 A1H9Y 22 A1H9Y O1 O1 O 0 1 N N N N N N -12.992 -27.520 -0.575 0.592 -0.267 0.666 O1 A1H9Y 23 A1H9Y O2 O2 O 0 1 N N N N N N -15.696 -24.405 0.643 -3.097 -0.001 -1.191 O2 A1H9Y 24 A1H9Y C14 C20 C 0 1 N N N N N N -11.107 -27.730 1.962 3.704 0.530 0.126 C14 A1H9Y 25 A1H9Y C16 C21 C 0 1 N N S N N N -11.018 -26.220 2.174 2.953 0.765 1.438 C16 A1H9Y 26 A1H9Y C18 C22 C 0 1 N N N N N N -9.178 -24.695 2.612 3.464 1.158 3.748 C18 A1H9Y 27 A1H9Y N4 N4 N 0 1 N N N N N N -9.900 -25.047 3.824 3.179 -0.265 3.531 N4 A1H9Y 28 A1H9Y C19 C23 C 0 1 N N N N N N -10.987 -25.774 3.627 2.883 -0.513 2.244 C19 A1H9Y 29 A1H9Y O3 O3 O 0 1 N N N N N N -11.855 -25.999 4.464 2.600 -1.604 1.794 O3 A1H9Y 30 A1H9Y C23 C24 C 0 1 N N N N N N -16.197 -18.860 -1.923 -6.218 -3.756 -0.689 C23 A1H9Y 31 A1H9Y N5 N5 N 0 1 N N N N N N -11.420 -31.541 0.711 4.641 -2.768 -1.189 N5 A1H9Y 32 A1H9Y O4 O4 O 0 1 N N N N N N -17.135 -21.416 -2.813 -4.101 -2.262 -0.121 O4 A1H9Y 33 A1H9Y O5 O5 O 0 1 N N N N N N -10.523 -30.585 2.538 5.961 -1.109 -1.843 O5 A1H9Y 34 A1H9Y O6 O6 O 0 1 N N N N N N -13.403 -29.913 0.598 4.111 0.532 -2.673 O6 A1H9Y 35 A1H9Y H6 H1 H 0 1 N N N N N N -14.162 -27.079 2.266 1.612 0.898 -2.003 H6 A1H9Y 36 A1H9Y H3 H2 H 0 1 N N N N N N -15.103 -27.264 -2.630 -0.508 1.783 1.793 H3 A1H9Y 37 A1H9Y H4 H3 H 0 1 N N N N N N -15.686 -26.611 0.934 -1.062 0.739 -1.706 H4 A1H9Y 38 A1H9Y H7 H4 H 0 1 N N N N N N -12.630 -28.304 3.330 2.577 -1.258 -0.288 H7 A1H9Y 39 A1H9Y H10 H5 H 0 1 N N N N N N -17.825 -27.782 0.896 -2.562 2.914 -1.122 H10 A1H9Y 40 A1H9Y H15 H6 H 0 1 N N N N N N -13.315 -30.282 2.610 3.016 -1.218 -2.761 H15 A1H9Y 41 A1H9Y H19 H7 H 0 1 N N N N N N -9.057 -26.375 1.245 4.803 1.718 2.112 H19 A1H9Y 42 A1H9Y H20 H8 H 0 1 N N N N N N -10.053 -25.003 0.651 3.345 2.755 2.259 H20 A1H9Y 43 A1H9Y H24 H9 H 0 1 N N N N N N -15.832 -20.037 -0.171 -7.013 -2.427 0.809 H24 A1H9Y 44 A1H9Y H26 H10 H 0 1 N N N N N N -17.903 -18.735 0.214 -6.713 -1.458 -2.069 H26 A1H9Y 45 A1H9Y H25 H11 H 0 1 N N N N N N -18.723 -19.664 -1.086 -8.225 -2.020 -1.315 H25 A1H9Y 46 A1H9Y H27 H12 H 0 1 N N N N N N -18.174 -20.500 0.406 -7.438 -0.533 -0.733 H27 A1H9Y 47 A1H9Y H34 H13 H 0 1 N N N N N N -10.575 -33.065 -0.445 5.440 -4.558 -0.444 H34 A1H9Y 48 A1H9Y H33 H14 H 0 1 N N N N N N -9.410 -31.886 0.249 6.410 -3.768 -1.711 H33 A1H9Y 49 A1H9Y H32 H15 H 0 1 N N N N N N -10.181 -33.116 1.307 6.380 -3.095 -0.063 H32 A1H9Y 50 A1H9Y H1 H16 H 0 1 N N N N N N -15.379 -25.565 -4.326 -2.173 1.498 3.534 H1 A1H9Y 51 A1H9Y H2 H17 H 0 1 N N N N N N -15.775 -23.207 -3.670 -4.364 0.446 3.002 H2 A1H9Y 52 A1H9Y H5 H18 H 0 1 N N N N N N -15.723 -22.199 -0.124 -5.926 0.065 0.757 H5 A1H9Y 53 A1H9Y H9 H19 H 0 1 N N N N N N -15.914 -28.461 -1.438 -0.079 3.003 0.087 H9 A1H9Y 54 A1H9Y H8 H20 H 0 1 N N N N N N -15.771 -29.080 0.242 0.454 2.739 -1.590 H8 A1H9Y 55 A1H9Y H11 H21 H 0 1 N N N N N N -19.091 -26.449 -0.813 -2.425 5.443 -1.270 H11 A1H9Y 56 A1H9Y H12 H22 H 0 1 N N N N N N -17.863 -26.812 -2.073 -0.586 5.349 -1.181 H12 A1H9Y 57 A1H9Y H13 H23 H 0 1 N N N N N N -19.525 -28.986 -0.505 -0.555 3.951 -3.297 H13 A1H9Y 58 A1H9Y H14 H24 H 0 1 N N N N N N -18.297 -29.349 -1.765 -2.394 4.045 -3.386 H14 A1H9Y 59 A1H9Y H16 H25 H 0 1 N N N N N N -10.378 -28.212 2.630 4.647 0.024 0.333 H16 A1H9Y 60 A1H9Y H17 H26 H 0 1 N N N N N N -10.843 -27.944 0.916 3.904 1.488 -0.354 H17 A1H9Y 61 A1H9Y H18 H27 H 0 1 N N N N N N -11.901 -25.764 1.702 1.952 1.149 1.240 H18 A1H9Y 62 A1H9Y H21 H28 H 0 1 N N N N N N -8.102 -24.892 2.730 4.343 1.274 4.382 H21 A1H9Y 63 A1H9Y H22 H29 H 0 1 N N N N N N -9.332 -23.635 2.362 2.604 1.651 4.200 H22 A1H9Y 64 A1H9Y H23 H30 H 0 1 N N N N N N -9.599 -24.762 4.734 3.201 -0.940 4.228 H23 A1H9Y 65 A1H9Y H30 H31 H 0 1 N N N N N N -16.180 -17.902 -1.382 -5.643 -4.341 0.029 H30 A1H9Y 66 A1H9Y H29 H32 H 0 1 N N N N N N -15.198 -19.066 -2.335 -7.176 -4.244 -0.871 H29 A1H9Y 67 A1H9Y H28 H33 H 0 1 N N N N N N -16.928 -18.805 -2.743 -5.665 -3.682 -1.625 H28 A1H9Y 68 A1H9Y H31 H34 H 0 1 N N N N N N -12.216 -31.564 0.106 3.740 -3.106 -1.068 H31 A1H9Y 69 A1H9Y H35 H35 H 0 1 N N N N N N -13.308 -29.099 0.117 4.683 1.066 -2.106 H35 A1H9Y 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H9Y C1 C2 SING N N 1 A1H9Y C2 C3 DOUB N N 2 A1H9Y C3 C4 SING N N 3 A1H9Y C4 N1 SING N N 4 A1H9Y N1 C5 SING N N 5 A1H9Y C1 C5 DOUB N N 6 A1H9Y N1 C6 SING N N 7 A1H9Y C3 N2 SING N N 8 A1H9Y C6 C7 SING N N 9 A1H9Y C7 N3 SING N N 10 A1H9Y N3 C8 SING N N 11 A1H9Y C6 C9 SING N N 12 A1H9Y C9 C10 SING N N 13 A1H9Y C10 C11 SING N N 14 A1H9Y C11 C12 SING N N 15 A1H9Y C10 C12 SING N N 16 A1H9Y C7 O1 DOUB N N 17 A1H9Y C4 O2 DOUB N N 18 A1H9Y C8 C13 SING N N 19 A1H9Y C8 C14 SING N N 20 A1H9Y C13 C15 SING N N 21 A1H9Y C14 C16 SING N N 22 A1H9Y C16 C17 SING N N 23 A1H9Y C17 C18 SING N N 24 A1H9Y C18 N4 SING N N 25 A1H9Y N4 C19 SING N N 26 A1H9Y C16 C19 SING N N 27 A1H9Y C19 O3 DOUB N N 28 A1H9Y N2 C20 SING N N 29 A1H9Y C20 C21 SING N N 30 A1H9Y C21 C22 SING N N 31 A1H9Y C21 C23 SING N N 32 A1H9Y C15 N5 SING N N 33 A1H9Y N5 C24 SING N N 34 A1H9Y C20 O4 DOUB N N 35 A1H9Y C15 O5 DOUB N N 36 A1H9Y C13 O6 SING N N 37 A1H9Y N3 H6 SING N N 38 A1H9Y C5 H3 SING N N 39 A1H9Y C6 H4 SING N N 40 A1H9Y C8 H7 SING N N 41 A1H9Y C10 H10 SING N N 42 A1H9Y C13 H15 SING N N 43 A1H9Y C17 H19 SING N N 44 A1H9Y C17 H20 SING N N 45 A1H9Y C21 H24 SING N N 46 A1H9Y C22 H26 SING N N 47 A1H9Y C22 H25 SING N N 48 A1H9Y C22 H27 SING N N 49 A1H9Y C24 H34 SING N N 50 A1H9Y C24 H33 SING N N 51 A1H9Y C24 H32 SING N N 52 A1H9Y C1 H1 SING N N 53 A1H9Y C2 H2 SING N N 54 A1H9Y N2 H5 SING N N 55 A1H9Y C9 H9 SING N N 56 A1H9Y C9 H8 SING N N 57 A1H9Y C11 H11 SING N N 58 A1H9Y C11 H12 SING N N 59 A1H9Y C12 H13 SING N N 60 A1H9Y C12 H14 SING N N 61 A1H9Y C14 H16 SING N N 62 A1H9Y C14 H17 SING N N 63 A1H9Y C16 H18 SING N N 64 A1H9Y C18 H21 SING N N 65 A1H9Y C18 H22 SING N N 66 A1H9Y N4 H23 SING N N 67 A1H9Y C23 H30 SING N N 68 A1H9Y C23 H29 SING N N 69 A1H9Y C23 H28 SING N N 70 A1H9Y N5 H31 SING N N 71 A1H9Y O6 H35 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H9Y InChI InChI 1.06 "InChI=1S/C24H35N5O6/c1-13(2)20(31)27-16-5-4-10-29(24(16)35)18(11-14-6-7-14)22(33)28-17(19(30)23(34)25-3)12-15-8-9-26-21(15)32/h4-5,10,13-15,17-19,30H,6-9,11-12H2,1-3H3,(H,25,34)(H,26,32)(H,27,31)(H,28,33)/t15-,17+,18-,19+/m0/s1" A1H9Y InChIKey InChI 1.06 XBTRGWYUGIHXFR-WZGPROSRSA-N A1H9Y SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)C(C)C)C3=O" A1H9Y SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)C(C)C)C3=O" A1H9Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)NC1=CC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@H](C[C@@H]3CCNC3=O)[C@H](C(=O)NC)O" A1H9Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)NC1=CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NC)O" # _pdbx_chem_comp_identifier.comp_id A1H9Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R})-3-[[(2~{S})-3-cyclopropyl-2-[3-(2-methylpropanoylamino)-2-oxidanylidene-pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H9Y "Create component" 2024-04-29 PDBE A1H9Y "Modify PCM" 2024-09-27 PDBE A1H9Y "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H9Y _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #