data_A1H9Z # _chem_comp.id A1H9Z _chem_comp.name "tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-5-fluoranyl-2-oxidanylidene-pyridin-3-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H36 F N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-29 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.581 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H9Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F3A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H9Z N1 N1 N 0 1 N N N N N N 29.447 -2.892 18.477 -1.346 1.595 -0.209 N1 A1H9Z 1 A1H9Z N3 N2 N 0 1 N N N N N N 27.585 -1.533 21.143 2.146 0.502 -0.693 N3 A1H9Z 2 A1H9Z C4 C1 C 0 1 N N N N N N 29.057 -1.980 17.525 -2.490 0.902 -0.368 C4 A1H9Z 3 A1H9Z C5 C2 C 0 1 N N N N N N 30.695 -3.456 18.478 -1.258 2.590 0.715 C5 A1H9Z 4 A1H9Z C6 C3 C 0 1 N N S N N N 28.533 -3.165 19.586 -0.181 1.269 -1.035 C6 A1H9Z 5 A1H9Z C7 C4 C 0 1 N N N N N N 28.682 -1.940 20.495 0.963 0.850 -0.148 C7 A1H9Z 6 A1H9Z C8 C5 C 0 1 N N S N N N 27.616 -0.514 22.179 3.257 0.094 0.170 C8 A1H9Z 7 A1H9Z C10 C6 C 0 1 N N N N N N 27.764 -5.561 19.947 -0.884 2.851 -2.837 C10 A1H9Z 8 A1H9Z C13 C7 C 0 1 N N R N N N 27.359 -1.187 23.536 4.103 1.319 0.525 C13 A1H9Z 9 A1H9Z C15 C8 C 0 1 N N N N N N 26.656 0.616 21.807 4.125 -0.929 -0.566 C15 A1H9Z 10 A1H9Z C17 C9 C 0 1 N N N N N N 28.427 2.291 20.898 2.933 -2.890 0.492 C17 A1H9Z 11 A1H9Z C20 C10 C 0 1 N N N N N N 29.311 -0.178 26.627 7.307 -0.288 1.865 C20 A1H9Z 12 A1H9Z C21 C11 C 0 1 N N N N N N 30.376 0.092 14.928 -4.828 -0.844 0.436 C21 A1H9Z 13 A1H9Z C22 C12 C 0 1 N N N N N N 29.628 1.113 12.838 -5.895 -2.978 0.379 C22 A1H9Z 14 A1H9Z C24 C13 C 0 1 N N N N N N 29.117 -0.217 12.304 -7.251 -3.595 0.030 C24 A1H9Z 15 A1H9Z C1 C14 C 0 1 N N N N N N 31.590 -3.180 17.490 -2.320 2.910 1.492 C1 A1H9Z 16 A1H9Z C2 C15 C 0 1 N N N N N N 31.283 -2.270 16.506 -3.529 2.213 1.349 C2 A1H9Z 17 A1H9Z C3 C16 C 0 1 N N N N N N 30.019 -1.722 16.486 -3.615 1.206 0.428 C3 A1H9Z 18 A1H9Z F1 F1 F 0 1 N N N N N N 32.788 -3.782 17.478 -2.218 3.908 2.398 F1 A1H9Z 19 A1H9Z N2 N3 N 0 1 N N N N N N 29.561 -0.743 15.608 -4.811 0.493 0.265 N2 A1H9Z 20 A1H9Z O1 O1 O 0 1 N N N N N N 27.959 -1.442 17.582 -2.553 0.012 -1.202 O1 A1H9Z 21 A1H9Z C9 C17 C 0 1 N N N N N N 28.772 -4.502 20.283 0.228 2.500 -1.847 C9 A1H9Z 22 A1H9Z C11 C18 C 0 1 N N N N N N 28.165 -6.999 19.993 -0.617 3.986 -3.827 C11 A1H9Z 23 A1H9Z C12 C19 C 0 1 N N N N N N 27.882 -6.345 18.680 -1.586 4.199 -2.662 C12 A1H9Z 24 A1H9Z O2 O2 O 0 1 N N N N N N 29.776 -1.372 20.603 0.819 0.825 1.056 O2 A1H9Z 25 A1H9Z C14 C20 C 0 1 N N N N N N 27.753 -0.314 24.705 5.226 0.905 1.441 C14 A1H9Z 26 A1H9Z N4 N4 N 0 1 N N N N N N 28.731 -0.833 25.465 6.267 0.201 0.956 N4 A1H9Z 27 A1H9Z C16 C21 C 0 1 N N S N N N 27.199 1.413 20.627 3.306 -2.192 -0.837 C16 A1H9Z 28 A1H9Z C18 C22 C 0 1 N N N N N N 28.152 3.588 20.146 3.030 -4.382 0.102 C18 A1H9Z 29 A1H9Z N5 N5 N 0 1 N N N N N N 26.712 3.569 19.945 3.971 -4.432 -1.023 N5 A1H9Z 30 A1H9Z C19 C23 C 0 1 N N N N N N 26.161 2.364 20.058 4.141 -3.217 -1.573 C19 A1H9Z 31 A1H9Z O3 O3 O 0 1 N N N N N N 25.001 2.043 19.747 4.857 -2.978 -2.521 O3 A1H9Z 32 A1H9Z O4 O4 O 0 1 N N N N N N 28.149 -2.358 23.689 3.284 2.288 1.182 O4 A1H9Z 33 A1H9Z O5 O5 O 0 1 N N N N N N 27.192 0.780 24.868 5.192 1.207 2.616 O5 A1H9Z 34 A1H9Z O6 O6 O 0 1 N N N N N N 29.608 0.992 14.306 -5.949 -1.542 0.172 O6 A1H9Z 35 A1H9Z O7 O7 O 0 1 N N N N N N 31.584 0.112 14.971 -3.832 -1.419 0.827 O7 A1H9Z 36 A1H9Z C23 C24 C 0 1 N N N N N N 28.689 2.276 12.563 -5.563 -3.271 1.843 C23 A1H9Z 37 A1H9Z C25 C25 C 0 1 N N N N N N 31.050 1.409 12.398 -4.813 -3.582 -0.520 C25 A1H9Z 38 A1H9Z H5 H1 H 0 1 N N N N N N 26.707 -1.947 20.905 2.261 0.521 -1.656 H5 A1H9Z 39 A1H9Z H2 H2 H 0 1 N N N N N N 30.973 -4.130 19.275 -0.330 3.131 0.830 H2 A1H9Z 40 A1H9Z H4 H3 H 0 1 N N N N N N 27.504 -3.169 19.198 -0.433 0.454 -1.713 H4 A1H9Z 41 A1H9Z H6 H4 H 0 1 N N N N N N 28.629 -0.087 22.213 2.864 -0.353 1.083 H6 A1H9Z 42 A1H9Z H9 H5 H 0 1 N N N N N N 26.735 -5.349 20.274 -1.487 2.011 -3.185 H9 A1H9Z 43 A1H9Z H14 H6 H 0 1 N N N N N N 26.290 -1.433 23.613 4.518 1.750 -0.386 H14 A1H9Z 44 A1H9Z H17 H7 H 0 1 N N N N N N 25.680 0.187 21.535 4.463 -0.505 -1.512 H17 A1H9Z 45 A1H9Z H16 H8 H 0 1 N N N N N N 26.534 1.286 22.671 4.990 -1.181 0.048 H16 A1H9Z 46 A1H9Z H19 H9 H 0 1 N N N N N N 28.536 2.483 21.976 3.650 -2.645 1.276 H19 A1H9Z 47 A1H9Z H20 H10 H 0 1 N N N N N N 29.340 1.809 20.518 1.919 -2.632 0.798 H20 A1H9Z 48 A1H9Z H27 H11 H 0 1 N N N N N N 30.090 -0.822 27.061 8.061 -0.832 1.295 H27 A1H9Z 49 A1H9Z H25 H12 H 0 1 N N N N N N 29.756 0.781 26.323 7.774 0.557 2.370 H25 A1H9Z 50 A1H9Z H26 H13 H 0 1 N N N N N N 28.526 0.003 27.376 6.861 -0.953 2.604 H26 A1H9Z 51 A1H9Z H31 H14 H 0 1 N N N N N N 29.107 -0.192 11.204 -8.021 -3.165 0.670 H31 A1H9Z 52 A1H9Z H33 H15 H 0 1 N N N N N N 29.777 -1.027 12.646 -7.487 -3.387 -1.014 H33 A1H9Z 53 A1H9Z H32 H16 H 0 1 N N N N N N 28.097 -0.394 12.676 -7.210 -4.674 0.185 H32 A1H9Z 54 A1H9Z H1 H17 H 0 1 N N N N N N 32.017 -1.991 15.765 -4.380 2.463 1.966 H1 A1H9Z 55 A1H9Z H3 H18 H 0 1 N N N N N N 28.574 -0.653 15.474 -5.627 0.962 0.030 H3 A1H9Z 56 A1H9Z H7 H19 H 0 1 N N N N N N 29.767 -4.869 19.993 0.394 3.341 -1.174 H7 A1H9Z 57 A1H9Z H8 H20 H 0 1 N N N N N N 28.746 -4.334 21.370 1.147 2.285 -2.394 H8 A1H9Z 58 A1H9Z H10 H21 H 0 1 N N N N N N 29.196 -7.274 20.259 0.352 4.483 -3.773 H10 A1H9Z 59 A1H9Z H11 H22 H 0 1 N N N N N N 27.470 -7.751 20.394 -1.044 3.894 -4.826 H11 A1H9Z 60 A1H9Z H12 H23 H 0 1 N N N N N N 28.705 -6.138 17.980 -2.650 4.247 -2.895 H12 A1H9Z 61 A1H9Z H13 H24 H 0 1 N N N N N N 26.978 -6.615 18.114 -1.255 4.836 -1.842 H13 A1H9Z 62 A1H9Z H15 H25 H 0 1 N N N N N N 29.086 -1.734 25.214 6.327 0.017 0.006 H15 A1H9Z 63 A1H9Z H18 H26 H 0 1 N N N N N N 27.469 0.698 19.836 2.408 -1.949 -1.405 H18 A1H9Z 64 A1H9Z H21 H27 H 0 1 N N N N N N 28.453 4.460 20.745 3.412 -4.966 0.939 H21 A1H9Z 65 A1H9Z H22 H28 H 0 1 N N N N N N 28.683 3.603 19.183 2.054 -4.756 -0.206 H22 A1H9Z 66 A1H9Z H23 H29 H 0 1 N N N N N N 26.182 4.391 19.739 4.414 -5.239 -1.331 H23 A1H9Z 67 A1H9Z H24 H30 H 0 1 N N N N N N 27.970 -2.753 24.534 2.540 2.600 0.649 H24 A1H9Z 68 A1H9Z H28 H31 H 0 1 N N N N N N 28.631 2.453 11.479 -5.522 -4.349 1.998 H28 A1H9Z 69 A1H9Z H29 H32 H 0 1 N N N N N N 27.687 2.037 12.949 -4.597 -2.831 2.092 H29 A1H9Z 70 A1H9Z H30 H33 H 0 1 N N N N N N 29.069 3.180 13.062 -6.333 -2.841 2.483 H30 A1H9Z 71 A1H9Z H35 H34 H 0 1 N N N N N N 31.083 1.503 11.303 -4.772 -4.660 -0.365 H35 A1H9Z 72 A1H9Z H34 H35 H 0 1 N N N N N N 31.387 2.350 12.857 -5.050 -3.374 -1.563 H34 A1H9Z 73 A1H9Z H36 H36 H 0 1 N N N N N N 31.710 0.589 12.716 -3.847 -3.142 -0.271 H36 A1H9Z 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H9Z C1 C2 SING N N 1 A1H9Z C2 C3 DOUB N N 2 A1H9Z C3 C4 SING N N 3 A1H9Z C4 N1 SING N N 4 A1H9Z N1 C5 SING N N 5 A1H9Z C1 C5 DOUB N N 6 A1H9Z C1 F1 SING N N 7 A1H9Z C3 N2 SING N N 8 A1H9Z N1 C6 SING N N 9 A1H9Z C4 O1 DOUB N N 10 A1H9Z C6 C7 SING N N 11 A1H9Z C7 N3 SING N N 12 A1H9Z N3 C8 SING N N 13 A1H9Z C6 C9 SING N N 14 A1H9Z C9 C10 SING N N 15 A1H9Z C10 C11 SING N N 16 A1H9Z C11 C12 SING N N 17 A1H9Z C10 C12 SING N N 18 A1H9Z C7 O2 DOUB N N 19 A1H9Z C8 C13 SING N N 20 A1H9Z C13 C14 SING N N 21 A1H9Z C14 N4 SING N N 22 A1H9Z C8 C15 SING N N 23 A1H9Z C15 C16 SING N N 24 A1H9Z C16 C17 SING N N 25 A1H9Z C17 C18 SING N N 26 A1H9Z C18 N5 SING N N 27 A1H9Z N5 C19 SING N N 28 A1H9Z C16 C19 SING N N 29 A1H9Z C19 O3 DOUB N N 30 A1H9Z C13 O4 SING N N 31 A1H9Z C14 O5 DOUB N N 32 A1H9Z N4 C20 SING N N 33 A1H9Z N2 C21 SING N N 34 A1H9Z C21 O6 SING N N 35 A1H9Z O6 C22 SING N N 36 A1H9Z C21 O7 DOUB N N 37 A1H9Z C22 C23 SING N N 38 A1H9Z C22 C24 SING N N 39 A1H9Z C22 C25 SING N N 40 A1H9Z N3 H5 SING N N 41 A1H9Z C5 H2 SING N N 42 A1H9Z C6 H4 SING N N 43 A1H9Z C8 H6 SING N N 44 A1H9Z C10 H9 SING N N 45 A1H9Z C13 H14 SING N N 46 A1H9Z C15 H17 SING N N 47 A1H9Z C15 H16 SING N N 48 A1H9Z C17 H19 SING N N 49 A1H9Z C17 H20 SING N N 50 A1H9Z C20 H27 SING N N 51 A1H9Z C20 H25 SING N N 52 A1H9Z C20 H26 SING N N 53 A1H9Z C24 H31 SING N N 54 A1H9Z C24 H33 SING N N 55 A1H9Z C24 H32 SING N N 56 A1H9Z C2 H1 SING N N 57 A1H9Z N2 H3 SING N N 58 A1H9Z C9 H7 SING N N 59 A1H9Z C9 H8 SING N N 60 A1H9Z C11 H10 SING N N 61 A1H9Z C11 H11 SING N N 62 A1H9Z C12 H12 SING N N 63 A1H9Z C12 H13 SING N N 64 A1H9Z N4 H15 SING N N 65 A1H9Z C16 H18 SING N N 66 A1H9Z C18 H21 SING N N 67 A1H9Z C18 H22 SING N N 68 A1H9Z N5 H23 SING N N 69 A1H9Z O4 H24 SING N N 70 A1H9Z C23 H28 SING N N 71 A1H9Z C23 H29 SING N N 72 A1H9Z C23 H30 SING N N 73 A1H9Z C25 H35 SING N N 74 A1H9Z C25 H34 SING N N 75 A1H9Z C25 H36 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H9Z InChI InChI 1.06 "InChI=1S/C25H36FN5O7/c1-25(2,3)38-24(37)30-17-11-15(26)12-31(23(17)36)18(9-13-5-6-13)21(34)29-16(19(32)22(35)27-4)10-14-7-8-28-20(14)33/h11-14,16,18-19,32H,5-10H2,1-4H3,(H,27,35)(H,28,33)(H,29,34)(H,30,37)/t14-,16-,18-,19+/m0/s1" A1H9Z InChIKey InChI 1.06 ZGDGTWIETIEHBK-OYSPMZIOSA-N A1H9Z SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=C(F)C=C(NC(=O)OC(C)(C)C)C3=O" A1H9Z SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=C(F)C=C(NC(=O)OC(C)(C)C)C3=O" A1H9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC(=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)NC)O)F" A1H9Z SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC(=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NC)O)F" # _pdbx_chem_comp_identifier.comp_id A1H9Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-[[(2~{S},3~{R})-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-5-fluoranyl-2-oxidanylidene-pyridin-3-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H9Z "Create component" 2024-04-29 PDBE A1H9Z "Modify PCM" 2024-09-27 PDBE A1H9Z "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H9Z _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #