data_A1I06 # _chem_comp.id A1I06 _chem_comp.name "(2~{R})-2-[[5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]amino]-3-(2-methoxyphenyl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 Cl N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-04 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.994 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I06 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I84 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I06 N1 N1 N 0 1 Y N N N N N 3.234 0.136 -6.460 -0.334 2.962 0.457 N1 A1I06 1 A1I06 N3 N2 N 0 1 Y N N N N N 3.660 1.222 -8.460 1.589 3.619 1.545 N3 A1I06 2 A1I06 C4 C1 C 0 1 Y N N N N N 4.231 0.715 -5.819 0.208 1.813 0.080 C4 A1I06 3 A1I06 C5 C2 C 0 1 Y N N N N N 5.009 1.644 -6.509 1.544 1.528 0.457 C5 A1I06 4 A1I06 C6 C3 C 0 1 Y N N N N N 4.654 1.867 -7.840 2.221 2.485 1.212 C6 A1I06 5 A1I06 C8 C4 C 0 1 Y N N N N N 6.629 3.230 -7.177 3.600 0.424 0.696 C8 A1I06 6 A1I06 C10 C5 C 0 1 N N N N N N 7.707 4.326 -7.412 4.640 -0.656 0.549 C10 A1I06 7 A1I06 C13 C6 C 0 1 Y N N N N N 6.594 3.509 -3.979 1.379 -1.922 0.053 C13 A1I06 8 A1I06 C15 C7 C 0 1 Y N N N N N 8.132 2.469 -2.398 0.986 -2.971 -2.066 C15 A1I06 9 A1I06 C17 C8 C 0 1 Y N N N N N 7.633 1.452 -4.508 1.943 -0.777 -1.994 C17 A1I06 10 A1I06 C21 C9 C 0 1 N N R N N N 3.667 -0.738 -3.855 -1.867 1.249 -1.130 C21 A1I06 11 A1I06 C22 C10 C 0 1 N N N N N N 3.844 -2.140 -4.612 -1.776 1.980 -2.445 C22 A1I06 12 A1I06 C26 C11 C 0 1 Y N N N N N 3.892 0.521 -1.657 -2.905 -0.682 0.027 C26 A1I06 13 A1I06 C28 C12 C 0 1 Y N N N N N 5.031 2.413 -0.703 -2.279 -2.306 1.672 C28 A1I06 14 A1I06 C18 C13 C 0 1 N N N N N N 5.686 4.666 -4.314 1.312 -1.954 1.558 C18 A1I06 15 A1I06 C14 C14 C 0 1 Y N N N N N 7.286 3.476 -2.781 0.930 -3.001 -0.683 C14 A1I06 16 A1I06 CL19 CL1 CL 0 0 N N N N N N 7.070 4.765 -1.698 0.294 -4.398 0.128 CL19 A1I06 17 A1I06 C16 C15 C 0 1 Y N N N N N 8.291 1.439 -3.292 1.491 -1.861 -2.718 C16 A1I06 18 A1I06 C12 C16 C 0 1 Y N N N N N 6.785 2.481 -4.836 1.889 -0.801 -0.601 C12 A1I06 19 A1I06 C9 C17 C 0 1 Y N N N N N 6.138 2.454 -6.138 2.373 0.360 0.183 C9 A1I06 20 A1I06 C11 C18 C 0 1 N N N N N N 9.106 3.989 -7.291 5.466 -0.401 -0.713 C11 A1I06 21 A1I06 S7 S1 S 0 1 Y N N N N N 5.787 2.965 -8.572 3.850 1.927 1.563 S7 A1I06 22 A1I06 C2 C19 C 0 1 Y N N N N N 2.936 0.359 -7.758 0.349 3.837 1.172 C2 A1I06 23 A1I06 N20 N3 N 0 1 N N N N N N 4.410 0.381 -4.500 -0.520 0.905 -0.669 N20 A1I06 24 A1I06 O24 O1 O 0 1 N N N N N N 2.974 -3.057 -4.483 -0.697 2.192 -2.945 O24 A1I06 25 A1I06 O23 O2 O 0 1 N N N N N N 4.849 -2.312 -5.339 -2.895 2.396 -3.060 O23 A1I06 26 A1I06 C25 C20 C 0 1 N N N N N N 4.013 -0.863 -2.360 -2.685 -0.031 -1.314 C25 A1I06 27 A1I06 C27 C21 C 0 1 Y N N N N N 5.059 1.157 -1.303 -2.081 -1.711 0.439 C27 A1I06 28 A1I06 C29 C22 C 0 1 Y N N N N N 3.841 3.058 -0.422 -3.302 -1.872 2.495 C29 A1I06 29 A1I06 C30 C23 C 0 1 Y N N N N N 2.672 2.395 -0.772 -4.129 -0.844 2.088 C30 A1I06 30 A1I06 C31 C24 C 0 1 Y N N N N N 2.708 1.157 -1.402 -3.933 -0.245 0.851 C31 A1I06 31 A1I06 O32 O3 O 0 1 N N N N N N 1.535 0.516 -1.748 -4.745 0.767 0.449 O32 A1I06 32 A1I06 C33 C25 C 0 1 N N N N N N 0.266 1.234 -1.476 -5.781 1.165 1.349 C33 A1I06 33 A1I06 H101 H1 H 0 0 N N N N N N 7.558 4.707 -8.433 5.296 -0.650 1.420 H101 A1I06 34 A1I06 H102 H2 H 0 0 N N N N N N 7.508 5.130 -6.688 4.149 -1.626 0.472 H102 A1I06 35 A1I06 H151 H3 H 0 0 N N N N N N 8.645 2.484 -1.447 0.634 -3.817 -2.637 H151 A1I06 36 A1I06 H171 H4 H 0 0 N N N N N N 7.788 0.644 -5.208 2.337 0.089 -2.505 H171 A1I06 37 A1I06 HA21 H5 H 0 0 N N N N N N 2.596 -0.495 -3.912 -2.352 1.888 -0.392 HA21 A1I06 38 A1I06 H281 H6 H 0 0 N N N N N N 5.963 2.896 -0.450 -1.633 -3.110 1.992 H281 A1I06 39 A1I06 H182 H7 H 0 0 N N N N N N 6.262 5.447 -4.832 2.268 -2.292 1.957 H182 A1I06 40 A1I06 H181 H8 H 0 0 N N N N N N 4.873 4.317 -4.967 1.095 -0.954 1.933 H181 A1I06 41 A1I06 H183 H9 H 0 0 N N N N N N 5.260 5.078 -3.387 0.525 -2.638 1.872 H183 A1I06 42 A1I06 H161 H10 H 0 0 N N N N N N 8.937 0.610 -3.043 1.533 -1.843 -3.797 H161 A1I06 43 A1I06 H111 H11 H 0 0 N N N N N N 9.717 4.882 -7.490 4.811 -0.407 -1.584 H111 A1I06 44 A1I06 H113 H12 H 0 0 N N N N N N 9.309 3.625 -6.273 5.958 0.569 -0.636 H113 A1I06 45 A1I06 H112 H13 H 0 0 N N N N N N 9.358 3.203 -8.018 6.219 -1.182 -0.820 H112 A1I06 46 A1I06 H21 H14 H 0 1 N N N N N N 2.112 -0.162 -8.223 -0.128 4.762 1.459 H21 A1I06 47 A1I06 HAA H15 H 0 1 N N N N N N 5.381 0.167 -4.396 -0.138 0.041 -0.889 HAA A1I06 48 A1I06 H1 H16 H 0 1 N N N N N N 4.816 -3.179 -5.725 -2.786 2.860 -3.901 H1 A1I06 49 A1I06 H252 H17 H 0 0 N N N N N N 3.319 -1.572 -1.885 -3.649 0.215 -1.760 H252 A1I06 50 A1I06 H251 H18 H 0 0 N N N N N N 5.044 -1.233 -2.256 -2.146 -0.716 -1.967 H251 A1I06 51 A1I06 H271 H19 H 0 0 N N N N N N 6.008 0.677 -1.493 -1.282 -2.052 -0.202 H271 A1I06 52 A1I06 H291 H20 H 0 0 N N N N N N 3.821 4.031 0.047 -3.454 -2.338 3.458 H291 A1I06 53 A1I06 H301 H21 H 0 0 N N N N N N 1.718 2.850 -0.551 -4.928 -0.506 2.731 H301 A1I06 54 A1I06 H332 H22 H 0 0 N N N N N N -0.583 0.614 -1.798 -6.354 1.979 0.906 H332 A1I06 55 A1I06 H333 H23 H 0 0 N N N N N N 0.184 1.437 -0.398 -6.441 0.318 1.539 H333 A1I06 56 A1I06 H331 H24 H 0 0 N N N N N N 0.257 2.184 -2.030 -5.339 1.499 2.287 H331 A1I06 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I06 C18 C13 SING N N 1 A1I06 C13 C14 DOUB Y N 2 A1I06 C13 C12 SING Y N 3 A1I06 C14 CL19 SING N N 4 A1I06 C14 C15 SING Y N 5 A1I06 C15 C16 DOUB Y N 6 A1I06 C16 C17 SING Y N 7 A1I06 C17 C12 DOUB Y N 8 A1I06 C12 C9 SING N N 9 A1I06 C9 C5 SING Y N 10 A1I06 C9 C8 DOUB Y N 11 A1I06 C5 C6 DOUB Y N 12 A1I06 C5 C4 SING Y N 13 A1I06 C8 C10 SING N N 14 A1I06 C8 S7 SING Y N 15 A1I06 C10 C11 SING N N 16 A1I06 S7 C6 SING Y N 17 A1I06 C6 N3 SING Y N 18 A1I06 N3 C2 DOUB Y N 19 A1I06 C2 N1 SING Y N 20 A1I06 N1 C4 DOUB Y N 21 A1I06 C4 N20 SING N N 22 A1I06 N20 C21 SING N N 23 A1I06 C21 C22 SING N N 24 A1I06 C21 C25 SING N N 25 A1I06 C22 O24 DOUB N N 26 A1I06 C22 O23 SING N N 27 A1I06 C25 C26 SING N N 28 A1I06 C26 C27 DOUB Y N 29 A1I06 C26 C31 SING Y N 30 A1I06 C27 C28 SING Y N 31 A1I06 C28 C29 DOUB Y N 32 A1I06 C29 C30 SING Y N 33 A1I06 C30 C31 DOUB Y N 34 A1I06 C31 O32 SING N N 35 A1I06 O32 C33 SING N N 36 A1I06 C10 H101 SING N N 37 A1I06 C10 H102 SING N N 38 A1I06 C15 H151 SING N N 39 A1I06 C17 H171 SING N N 40 A1I06 C21 HA21 SING N N 41 A1I06 C28 H281 SING N N 42 A1I06 C18 H182 SING N N 43 A1I06 C18 H181 SING N N 44 A1I06 C18 H183 SING N N 45 A1I06 C16 H161 SING N N 46 A1I06 C11 H111 SING N N 47 A1I06 C11 H113 SING N N 48 A1I06 C11 H112 SING N N 49 A1I06 C2 H21 SING N N 50 A1I06 N20 HAA SING N N 51 A1I06 O23 H1 SING N N 52 A1I06 C25 H252 SING N N 53 A1I06 C25 H251 SING N N 54 A1I06 C27 H271 SING N N 55 A1I06 C29 H291 SING N N 56 A1I06 C30 H301 SING N N 57 A1I06 C33 H332 SING N N 58 A1I06 C33 H333 SING N N 59 A1I06 C33 H331 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I06 InChI InChI 1.06 "InChI=1S/C25H24ClN3O3S/c1-4-20-21(16-9-7-10-17(26)14(16)2)22-23(27-13-28-24(22)33-20)29-18(25(30)31)12-15-8-5-6-11-19(15)32-3/h5-11,13,18H,4,12H2,1-3H3,(H,30,31)(H,27,28,29)/t18-/m1/s1" A1I06 InChIKey InChI 1.06 NMXPPJNMGXWERA-GOSISDBHSA-N A1I06 SMILES_CANONICAL CACTVS 3.385 "CCc1sc2ncnc(N[C@H](Cc3ccccc3OC)C(O)=O)c2c1c4cccc(Cl)c4C" A1I06 SMILES CACTVS 3.385 "CCc1sc2ncnc(N[CH](Cc3ccccc3OC)C(O)=O)c2c1c4cccc(Cl)c4C" A1I06 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c2c(ncnc2s1)N[C@H](Cc3ccccc3OC)C(=O)O)c4cccc(c4C)Cl" A1I06 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c2c(ncnc2s1)NC(Cc3ccccc3OC)C(=O)O)c4cccc(c4C)Cl" # _pdbx_chem_comp_identifier.comp_id A1I06 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]amino]-3-(2-methoxyphenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I06 "Create component" 2025-02-04 PDBE A1I06 "Initial release" 2026-08-26 RCSB #