data_A1I07 # _chem_comp.id A1I07 _chem_comp.name "(2~{R})-2-[5-[3-chloranyl-2-methyl-5-[(4-methylpiperazin-1-yl)methyl]-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 Cl N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-04 _chem_comp.pdbx_modified_date 2026-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 581.125 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I07 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I85 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I07 N1 N1 N 0 1 Y N N N N N 2.168 0.048 6.662 -2.126 -2.450 -1.862 N1 A1I07 1 A1I07 N3 N2 N 0 1 Y N N N N N 2.657 -1.252 8.511 -4.106 -1.477 -2.529 N3 A1I07 2 A1I07 C4 C1 C 0 1 Y N N N N N 3.203 -0.471 5.991 -1.735 -1.353 -1.236 C4 A1I07 3 A1I07 C5 C2 C 0 1 Y N N N N N 4.072 -1.392 6.593 -2.580 -0.219 -1.246 C5 A1I07 4 A1I07 C6 C3 C 0 1 Y N N N N N 3.684 -1.801 7.897 -3.796 -0.323 -1.924 C6 A1I07 5 A1I07 C8 C4 C 0 1 Y N N N N N 5.740 -3.025 7.016 -3.410 1.940 -0.854 C8 A1I07 6 A1I07 C13 C5 C 0 1 N N N N N N 2.863 2.271 4.727 1.101 -2.380 -1.980 C13 A1I07 7 A1I07 C17 C6 C 0 1 N N N N N N 7.738 -3.878 8.196 -2.838 4.297 -1.371 C17 A1I07 8 A1I07 C20 C7 C 0 1 Y N N N N N 6.385 -2.719 2.583 -0.056 1.672 2.236 C20 A1I07 9 A1I07 C21 C8 C 0 1 Y N N N N N 7.197 -1.618 2.350 1.066 2.162 1.579 C21 A1I07 10 A1I07 C22 C9 C 0 1 Y N N N N N 7.385 -0.671 3.325 1.058 2.305 0.199 C22 A1I07 11 A1I07 C24 C10 C 0 1 Y N N N N N 2.349 -0.379 1.928 0.437 -2.767 1.747 C24 A1I07 12 A1I07 C26 C11 C 0 1 Y N N N N N 0.540 -1.638 1.078 -0.621 -4.264 3.287 C26 A1I07 13 A1I07 C28 C12 C 0 1 Y N N N N N 2.737 -2.481 0.877 -0.705 -1.901 3.665 C28 A1I07 14 A1I07 C35 C13 C 0 1 N N N N N N 7.346 2.405 3.913 4.627 2.377 -0.872 C35 A1I07 15 A1I07 C36 C14 C 0 1 N N N N N N 7.090 3.353 5.114 5.692 1.279 -0.820 C36 A1I07 16 A1I07 N37 N3 N 0 1 N N N N N N 8.361 4.029 5.534 5.339 0.212 -1.766 N37 A1I07 17 A1I07 C40 C15 C 0 1 N N N N N N 8.053 4.765 6.788 6.377 -0.826 -1.801 C40 A1I07 18 A1I07 C38 C16 C 0 1 N N N N N N 9.550 3.083 5.629 4.028 -0.366 -1.439 C38 A1I07 19 A1I07 C39 C17 C 0 1 N N N N N N 9.731 2.200 4.350 2.962 0.732 -1.490 C39 A1I07 20 A1I07 N34 N4 N 0 1 N N N N N N 8.460 1.457 4.186 3.316 1.799 -0.544 N34 A1I07 21 A1I07 C33 C18 C 0 1 N N N N N N 8.359 0.543 3.044 2.277 2.838 -0.509 C33 A1I07 22 A1I07 C23 C19 C 0 1 Y N N N N N 6.680 -0.857 4.532 -0.064 1.961 -0.526 C23 A1I07 23 A1I07 O32 O1 O 0 1 N N N N N N 7.829 -1.503 1.150 2.173 2.502 2.290 O32 A1I07 24 A1I07 CL31 CL1 CL 0 0 N N N N N N 6.239 -3.879 1.317 -0.044 1.502 3.964 CL31 A1I07 25 A1I07 C19 C20 C 0 1 Y N N N N N 5.740 -2.896 3.785 -1.182 1.326 1.516 C19 A1I07 26 A1I07 C30 C21 C 0 1 N N N N N N 4.855 -4.100 3.938 -2.398 0.794 2.229 C30 A1I07 27 A1I07 C18 C22 C 0 1 Y N N N N N 5.829 -1.953 4.787 -1.192 1.469 0.130 C18 A1I07 28 A1I07 C9 C23 C 0 1 Y N N N N N 5.187 -2.104 6.070 -2.400 1.098 -0.646 C9 A1I07 29 A1I07 C16 C24 C 0 1 N N N N N N 6.959 -3.908 6.862 -3.457 3.355 -0.337 C16 A1I07 30 A1I07 S7 S1 S 0 1 Y N N N N N 4.838 -2.953 8.467 -4.678 1.193 -1.806 S7 A1I07 31 A1I07 C2 C25 C 0 1 Y N N N N N 1.871 -0.340 7.915 -3.287 -2.502 -2.491 C2 A1I07 32 A1I07 O10 O2 O 0 1 N N N N N N 3.464 -0.123 4.724 -0.542 -1.315 -0.595 O10 A1I07 33 A1I07 C11 C26 C 0 1 N N R N N N 2.593 0.903 4.135 0.293 -2.469 -0.711 C11 A1I07 34 A1I07 O15 O3 O 0 1 N N N N N N 3.893 2.423 5.416 1.885 -3.405 -2.350 O15 A1I07 35 A1I07 O14 O4 O 0 1 N N N N N N 1.957 3.126 4.735 1.042 -1.386 -2.664 O14 A1I07 36 A1I07 C12 C27 C 0 1 N N N N N N 2.867 0.844 2.622 1.237 -2.538 0.491 C12 A1I07 37 A1I07 C25 C28 C 0 1 Y N N N N N 1.007 -0.486 1.695 0.113 -4.054 2.136 C25 A1I07 38 A1I07 C27 C29 C 0 1 Y N N N N N 1.391 -2.632 0.650 -1.033 -3.187 4.051 C27 A1I07 39 A1I07 C29 C30 C 0 1 Y N N N N N 3.203 -1.374 1.536 0.030 -1.691 2.513 C29 A1I07 40 A1I07 H1 H1 H 0 1 N N N N N N 8.632 -4.513 8.113 -3.399 4.232 -2.303 H1 A1I07 41 A1I07 H2 H2 H 0 1 N N N N N N 8.042 -2.845 8.420 -2.872 5.320 -0.997 H2 A1I07 42 A1I07 H3 H3 H 0 1 N N N N N N 7.094 -4.254 9.005 -1.802 4.010 -1.550 H3 A1I07 43 A1I07 H4 H4 H 0 1 N N N N N N -0.523 -1.758 0.929 -0.874 -5.269 3.591 H4 A1I07 44 A1I07 H5 H5 H 0 1 N N N N N N 3.429 -3.236 0.535 -1.022 -1.060 4.264 H5 A1I07 45 A1I07 H6 H6 H 0 1 N N N N N N 7.601 3.010 3.030 4.872 3.156 -0.150 H6 A1I07 46 A1I07 H7 H7 H 0 1 N N N N N N 6.430 1.830 3.712 4.595 2.806 -1.873 H7 A1I07 47 A1I07 H8 H8 H 0 1 N N N N N N 6.354 4.117 4.821 6.661 1.699 -1.091 H8 A1I07 48 A1I07 H9 H9 H 0 1 N N N N N N 6.696 2.768 5.958 5.743 0.869 0.189 H9 A1I07 49 A1I07 H11 H11 H 0 1 N N N N N N 8.957 5.282 7.142 6.489 -1.262 -0.808 H11 A1I07 50 A1I07 H12 H12 H 0 1 N N N N N N 7.260 5.503 6.595 6.090 -1.604 -2.509 H12 A1I07 51 A1I07 H13 H13 H 0 1 N N N N N N 7.713 4.055 7.556 7.324 -0.383 -2.111 H13 A1I07 52 A1I07 H14 H14 H 0 1 N N N N N N 9.403 2.420 6.495 3.783 -1.145 -2.161 H14 A1I07 53 A1I07 H15 H15 H 0 1 N N N N N N 10.462 3.680 5.775 4.059 -0.795 -0.437 H15 A1I07 54 A1I07 H16 H16 H 0 1 N N N N N N 10.569 1.500 4.484 2.912 1.142 -2.499 H16 A1I07 55 A1I07 H17 H17 H 0 1 N N N N N N 9.920 2.834 3.471 1.993 0.312 -1.220 H17 A1I07 56 A1I07 H19 H19 H 0 1 N N N N N N 9.360 0.147 2.819 2.011 3.120 -1.528 H19 A1I07 57 A1I07 H20 H20 H 0 1 N N N N N N 7.983 1.104 2.176 2.654 3.711 0.023 H20 A1I07 58 A1I07 H21 H21 H 0 1 N N N N N N 6.799 -0.116 5.308 -0.069 2.073 -1.600 H21 A1I07 59 A1I07 H22 H22 H 0 1 N N N N N N 8.344 -0.705 1.138 2.803 1.778 2.409 H22 A1I07 60 A1I07 H23 H23 H 0 1 N N N N N N 5.437 -4.932 4.362 -3.079 1.616 2.450 H23 A1I07 61 A1I07 H24 H24 H 0 1 N N N N N N 4.019 -3.857 4.611 -2.903 0.066 1.593 H24 A1I07 62 A1I07 H25 H25 H 0 1 N N N N N N 4.461 -4.392 2.954 -2.094 0.314 3.159 H25 A1I07 63 A1I07 H26 H26 H 0 1 N N N N N N 6.648 -4.938 6.634 -4.493 3.642 -0.158 H26 A1I07 64 A1I07 H27 H27 H 0 1 N N N N N N 7.595 -3.528 6.049 -2.896 3.420 0.595 H27 A1I07 65 A1I07 H28 H28 H 0 1 N N N N N N 1.018 0.073 8.432 -3.571 -3.416 -2.991 H28 A1I07 66 A1I07 H29 H29 H 0 1 N N N N N N 1.540 0.638 4.312 -0.327 -3.365 -0.737 H29 A1I07 67 A1I07 H30 H30 H 0 1 N N N N N N 3.837 3.243 5.893 2.384 -3.301 -3.171 H30 A1I07 68 A1I07 H31 H31 H 0 1 N N N N N N 3.956 0.886 2.471 1.786 -1.600 0.576 H31 A1I07 69 A1I07 H32 H32 H 0 1 N N N N N N 2.399 1.724 2.157 1.941 -3.359 0.354 H32 A1I07 70 A1I07 H33 H33 H 0 1 N N N N N N 0.329 0.304 1.983 0.435 -4.895 1.539 H33 A1I07 71 A1I07 H34 H34 H 0 1 N N N N N N 1.009 -3.509 0.148 -1.607 -3.352 4.951 H34 A1I07 72 A1I07 H35 H35 H 0 1 N N N N N N 4.258 -1.285 1.749 0.287 -0.686 2.212 H35 A1I07 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I07 C27 C28 DOUB Y N 1 A1I07 C27 C26 SING Y N 2 A1I07 C28 C29 SING Y N 3 A1I07 C26 C25 DOUB Y N 4 A1I07 O32 C21 SING N N 5 A1I07 CL31 C20 SING N N 6 A1I07 C29 C24 DOUB Y N 7 A1I07 C25 C24 SING Y N 8 A1I07 C24 C12 SING N N 9 A1I07 C21 C20 DOUB Y N 10 A1I07 C21 C22 SING Y N 11 A1I07 C20 C19 SING Y N 12 A1I07 C12 C11 SING N N 13 A1I07 C33 C22 SING N N 14 A1I07 C33 N34 SING N N 15 A1I07 C22 C23 DOUB Y N 16 A1I07 C19 C30 SING N N 17 A1I07 C19 C18 DOUB Y N 18 A1I07 C35 N34 SING N N 19 A1I07 C35 C36 SING N N 20 A1I07 C11 O10 SING N N 21 A1I07 C11 C13 SING N N 22 A1I07 N34 C39 SING N N 23 A1I07 C39 C38 SING N N 24 A1I07 C23 C18 SING Y N 25 A1I07 O10 C4 SING N N 26 A1I07 C13 O14 DOUB N N 27 A1I07 C13 O15 SING N N 28 A1I07 C18 C9 SING N N 29 A1I07 C36 N37 SING N N 30 A1I07 N37 C38 SING N N 31 A1I07 N37 C40 SING N N 32 A1I07 C4 C5 DOUB Y N 33 A1I07 C4 N1 SING Y N 34 A1I07 C9 C5 SING Y N 35 A1I07 C9 C8 DOUB Y N 36 A1I07 C5 C6 SING Y N 37 A1I07 N1 C2 DOUB Y N 38 A1I07 C16 C8 SING N N 39 A1I07 C16 C17 SING N N 40 A1I07 C8 S7 SING Y N 41 A1I07 C6 S7 SING Y N 42 A1I07 C6 N3 DOUB Y N 43 A1I07 C2 N3 SING Y N 44 A1I07 C17 H1 SING N N 45 A1I07 C17 H2 SING N N 46 A1I07 C17 H3 SING N N 47 A1I07 C26 H4 SING N N 48 A1I07 C28 H5 SING N N 49 A1I07 C35 H6 SING N N 50 A1I07 C35 H7 SING N N 51 A1I07 C36 H8 SING N N 52 A1I07 C36 H9 SING N N 53 A1I07 C40 H11 SING N N 54 A1I07 C40 H12 SING N N 55 A1I07 C40 H13 SING N N 56 A1I07 C38 H14 SING N N 57 A1I07 C38 H15 SING N N 58 A1I07 C39 H16 SING N N 59 A1I07 C39 H17 SING N N 60 A1I07 C33 H19 SING N N 61 A1I07 C33 H20 SING N N 62 A1I07 C23 H21 SING N N 63 A1I07 O32 H22 SING N N 64 A1I07 C30 H23 SING N N 65 A1I07 C30 H24 SING N N 66 A1I07 C30 H25 SING N N 67 A1I07 C16 H26 SING N N 68 A1I07 C16 H27 SING N N 69 A1I07 C2 H28 SING N N 70 A1I07 C11 H29 SING N N 71 A1I07 O15 H30 SING N N 72 A1I07 C12 H31 SING N N 73 A1I07 C12 H32 SING N N 74 A1I07 C25 H33 SING N N 75 A1I07 C27 H34 SING N N 76 A1I07 C29 H35 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I07 InChI InChI 1.06 "InChI=1S/C30H33ClN4O4S/c1-4-23-24(21-15-20(27(36)26(31)18(21)2)16-35-12-10-34(3)11-13-35)25-28(32-17-33-29(25)40-23)39-22(30(37)38)14-19-8-6-5-7-9-19/h5-9,15,17,22,36H,4,10-14,16H2,1-3H3,(H,37,38)/t22-/m1/s1" A1I07 InChIKey InChI 1.06 DCMCGGYUUNYUDN-JOCHJYFZSA-N A1I07 SMILES_CANONICAL CACTVS 3.385 "CCc1sc2ncnc(O[C@H](Cc3ccccc3)C(O)=O)c2c1c4cc(CN5CCN(C)CC5)c(O)c(Cl)c4C" A1I07 SMILES CACTVS 3.385 "CCc1sc2ncnc(O[CH](Cc3ccccc3)C(O)=O)c2c1c4cc(CN5CCN(C)CC5)c(O)c(Cl)c4C" A1I07 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c2c(ncnc2s1)O[C@H](Cc3ccccc3)C(=O)O)c4cc(c(c(c4C)Cl)O)CN5CCN(CC5)C" A1I07 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c2c(ncnc2s1)OC(Cc3ccccc3)C(=O)O)c4cc(c(c(c4C)Cl)O)CN5CCN(CC5)C" # _pdbx_chem_comp_identifier.comp_id A1I07 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[5-[3-chloranyl-2-methyl-5-[(4-methylpiperazin-1-yl)methyl]-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I07 "Create component" 2025-02-04 PDBE A1I07 "Initial release" 2026-08-19 RCSB #