data_A1I08 # _chem_comp.id A1I08 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] (3~{S})-3-(propanoylamino)piperidine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H29 N7 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-05 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I7Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I08 C10 C1 C 0 1 N N S N N N -13.675 -44.652 26.515 0.393 0.166 -0.375 C10 A1I08 1 A1I08 C15 C2 C 0 1 N N N N N N -15.676 -50.375 24.751 3.944 2.548 2.828 C15 A1I08 2 A1I08 C17 C3 C 0 1 N N S N N N -13.830 -49.125 24.022 5.369 2.962 0.816 C17 A1I08 3 A1I08 C20 C4 C 0 1 N N N N N N -10.830 -47.657 21.783 8.392 4.043 -1.270 C20 A1I08 4 A1I08 C21 C5 C 0 1 N N N N N N -10.826 -46.166 21.283 9.064 3.260 -2.400 C21 A1I08 5 A1I08 C26 C6 C 0 1 N N N N N N -12.265 -43.064 25.068 -1.986 0.967 -0.649 C26 A1I08 6 A1I08 C02 C7 C 0 1 N N N N N N -9.523 -42.786 31.946 0.586 -6.850 -0.521 C02 A1I08 7 A1I08 C03 C8 C 0 1 Y N N N N N -10.335 -42.710 30.685 0.040 -5.564 -0.739 C03 A1I08 8 A1I08 C05 C9 C 0 1 Y N N N N N -11.396 -42.195 28.847 -0.988 -3.778 -1.411 C05 A1I08 9 A1I08 C07 C10 C 0 1 N N R N N N -12.001 -44.437 28.079 -0.236 -2.086 0.306 C07 A1I08 10 A1I08 C08 C11 C 0 1 N N R N N N -13.582 -44.195 27.685 0.944 -1.273 -0.271 C08 A1I08 11 A1I08 C12 C12 C 0 1 N N N N N N -14.810 -46.896 26.265 2.214 1.689 -0.127 C12 A1I08 12 A1I08 C14 C13 C 0 1 N N N N N N -15.935 -48.996 25.433 2.679 2.804 2.002 C14 A1I08 13 A1I08 C16 C14 C 0 1 N N N N N N -14.381 -50.486 24.056 5.095 3.382 2.261 C16 A1I08 14 A1I08 C19 C15 C 0 1 N N N N N N -11.698 -47.894 23.005 7.236 3.244 -0.724 C19 A1I08 15 A1I08 C23 C16 C 0 1 N N N N N N -13.451 -48.742 25.458 4.120 3.222 -0.033 C23 A1I08 16 A1I08 C25 C17 C 0 1 N N R N N N -12.302 -44.272 25.789 -1.055 0.053 0.151 C25 A1I08 17 A1I08 C37 C18 C 0 1 Y N N N N N -10.787 -43.854 30.096 0.379 -4.533 0.145 C37 A1I08 18 A1I08 C39 C19 C 0 1 N N N N N N -9.792 -45.250 31.897 1.707 -5.981 1.359 C39 A1I08 19 A1I08 N04 N1 N 0 1 Y N N N N N -10.730 -41.684 29.875 -0.798 -5.039 -1.666 N04 A1I08 20 A1I08 N06 N2 N 0 1 Y N N N N N -11.459 -43.515 28.992 -0.281 -3.420 -0.300 N06 A1I08 21 A1I08 N13 N3 N 0 1 N N N N N N -14.732 -48.377 26.135 2.976 2.540 0.588 N13 A1I08 22 A1I08 N18 N4 N 0 1 N N N N N N -12.843 -48.799 22.908 6.492 3.738 0.285 N18 A1I08 23 A1I08 N38 N5 N 0 1 N N N N N N -10.531 -45.179 30.688 1.205 -4.782 1.167 N38 A1I08 24 A1I08 N40 N6 N 0 1 N N N N N N -9.534 -46.500 32.526 2.549 -6.189 2.422 N40 A1I08 25 A1I08 N41 N7 N 0 1 N N N N N N -9.289 -44.065 32.529 1.408 -7.027 0.537 N41 A1I08 26 A1I08 O01 O1 O 0 1 N N N N N N -9.074 -41.813 32.492 0.317 -7.778 -1.265 O01 A1I08 27 A1I08 O09 O2 O 0 1 N N N N N N -14.291 -44.954 28.710 2.064 -1.318 0.616 O09 A1I08 28 A1I08 O11 O3 O 0 1 N N N N N N -13.603 -46.176 26.560 1.169 1.070 0.455 O11 A1I08 29 A1I08 O22 O4 O 0 1 N N N N N N -11.414 -47.410 24.022 6.976 2.156 -1.192 O22 A1I08 30 A1I08 O24 O5 O 0 1 N N N N N N -15.844 -46.338 26.089 2.470 1.479 -1.296 O24 A1I08 31 A1I08 O27 O6 O 0 1 N N N N N N -12.768 -41.996 25.833 -3.293 0.936 -0.074 O27 A1I08 32 A1I08 O29 O7 O 0 1 N N N N N N -11.870 -40.278 24.128 -5.806 1.611 0.305 O29 A1I08 33 A1I08 O31 O8 O 0 1 N N N N N N -12.853 -38.189 23.239 -7.826 2.093 1.917 O31 A1I08 34 A1I08 O32 O9 O 0 1 N N N N N N -10.358 -38.616 23.160 -6.969 3.851 0.321 O32 A1I08 35 A1I08 O33 O10 O 0 1 N N N N N N -11.900 -39.905 21.630 -8.229 1.903 -0.674 O33 A1I08 36 A1I08 O34 O11 O 0 1 N N N N N N -13.356 -39.563 26.076 -4.896 1.246 -2.135 O34 A1I08 37 A1I08 O35 O12 O 0 1 N N N N N N -14.350 -40.771 24.038 -4.157 3.213 -0.737 O35 A1I08 38 A1I08 O36 O13 O 0 1 N N N N N N -11.327 -44.314 26.958 -1.414 -1.331 -0.052 O36 A1I08 39 A1I08 P28 P1 P 0 1 N N N N N N -13.201 -40.666 25.022 -4.530 1.783 -0.662 P28 A1I08 40 A1I08 P30 P2 P 0 1 N N N N N N -11.739 -39.183 22.986 -7.202 2.396 0.464 P30 A1I08 41 A1I08 H101 H1 H 0 0 N N N N N N -14.534 -44.306 25.921 0.397 0.503 -1.412 H101 A1I08 42 A1I08 H151 H2 H 0 0 N N N N N N -15.716 -51.154 25.527 3.765 2.832 3.865 H151 A1I08 43 A1I08 H152 H3 H 0 0 N N N N N N -16.475 -50.549 24.016 4.202 1.490 2.779 H152 A1I08 44 A1I08 H171 H4 H 0 0 N N N N N N -14.697 -48.485 23.801 5.614 1.900 0.786 H171 A1I08 45 A1I08 H201 H5 H 0 0 N N N N N N -11.200 -48.295 20.967 9.114 4.226 -0.475 H201 A1I08 46 A1I08 H202 H6 H 0 0 N N N N N N -9.797 -47.942 22.032 8.026 4.994 -1.655 H202 A1I08 47 A1I08 H212 H7 H 0 0 N N N N N N -10.177 -46.077 20.399 9.900 3.838 -2.795 H212 A1I08 48 A1I08 H213 H8 H 0 0 N Y N N N N -11.850 -45.866 21.018 9.430 2.308 -2.015 H213 A1I08 49 A1I08 H211 H9 H 0 0 N N N N N N -10.448 -45.512 22.083 8.341 3.076 -3.195 H211 A1I08 50 A1I08 H261 H10 H 0 0 N N N N N N -12.874 -43.171 24.158 -1.602 1.987 -0.624 H261 A1I08 51 A1I08 H262 H11 H 0 0 N N N N N N -11.224 -42.845 24.789 -2.034 0.622 -1.682 H262 A1I08 52 A1I08 H051 H12 H 0 0 N N N N N N -11.817 -41.631 28.028 -1.613 -3.114 -1.990 H051 A1I08 53 A1I08 H071 H13 H 0 0 N N N N N N -11.924 -45.457 28.485 -0.151 -2.165 1.390 H071 A1I08 54 A1I08 H081 H14 H 0 0 N N N N N N -13.801 -43.120 27.771 1.221 -1.648 -1.256 H081 A1I08 55 A1I08 H141 H15 H 0 0 N N N N N N -16.731 -49.131 26.180 1.883 2.139 2.338 H141 A1I08 56 A1I08 H142 H16 H 0 0 N N N N N N -16.275 -48.293 24.658 2.367 3.841 2.123 H142 A1I08 57 A1I08 H161 H17 H 0 0 N N N N N N -13.707 -51.159 24.606 4.826 4.438 2.288 H161 A1I08 58 A1I08 H162 H18 H 0 0 N N N N N N -14.526 -50.867 23.034 5.990 3.221 2.862 H162 A1I08 59 A1I08 H231 H19 H 0 0 N N N N N N -12.977 -49.593 25.969 3.926 4.294 -0.078 H231 A1I08 60 A1I08 H232 H20 H 0 0 N N N N N N -12.761 -47.885 25.456 4.276 2.836 -1.040 H232 A1I08 61 A1I08 H251 H21 H 0 0 N N N N N N -12.055 -45.106 25.115 -1.095 0.305 1.210 H251 A1I08 62 A1I08 H181 H22 H 0 0 N N N N N N -12.992 -49.247 22.026 6.700 4.609 0.659 H181 A1I08 63 A1I08 H402 H23 H 0 0 N N N N N N -9.875 -47.346 32.116 2.767 -5.456 3.019 H402 A1I08 64 A1I08 H401 H24 H 0 0 N N N N N N -9.011 -46.533 33.378 2.927 -7.069 2.577 H401 A1I08 65 A1I08 H411 H25 H 0 0 N N N N N N -8.772 -44.137 33.382 1.792 -7.901 0.709 H411 A1I08 66 A1I08 H091 H26 H 0 0 N N N N N N -15.228 -44.878 28.570 2.450 -2.198 0.719 H091 A1I08 67 A1I08 H1 H27 H 0 1 N N N N N N -12.480 -37.347 23.473 -8.670 2.535 2.083 H1 A1I08 68 A1I08 H2 H28 H 0 1 N N N N N N -11.084 -39.858 21.147 -8.428 0.957 -0.641 H2 A1I08 69 A1I08 H3 H29 H 0 1 N N N N N N -14.177 -39.106 25.938 -5.151 0.313 -2.162 H3 A1I08 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I08 C02 O01 DOUB N N 1 A1I08 C03 C02 SING N N 2 A1I08 C05 N04 DOUB Y N 3 A1I08 N06 C05 SING Y N 4 A1I08 C07 N06 SING N N 5 A1I08 C08 C07 SING N N 6 A1I08 O09 C08 SING N N 7 A1I08 C10 C08 SING N N 8 A1I08 C12 O11 SING N N 9 A1I08 C14 N13 SING N N 10 A1I08 C15 C14 SING N N 11 A1I08 C16 C15 SING N N 12 A1I08 C17 C16 SING N N 13 A1I08 C19 N18 SING N N 14 A1I08 C21 C20 SING N N 15 A1I08 C20 C19 SING N N 16 A1I08 O22 C19 DOUB N N 17 A1I08 N18 C17 SING N N 18 A1I08 C23 C17 SING N N 19 A1I08 N13 C12 SING N N 20 A1I08 O24 C12 DOUB N N 21 A1I08 O11 C10 SING N N 22 A1I08 C25 C10 SING N N 23 A1I08 O27 C26 SING N N 24 A1I08 P28 O27 SING N N 25 A1I08 P30 O29 SING N N 26 A1I08 O31 P30 SING N N 27 A1I08 O32 P30 DOUB N N 28 A1I08 O33 P30 SING N N 29 A1I08 O29 P28 SING N N 30 A1I08 O34 P28 SING N N 31 A1I08 O35 P28 DOUB N N 32 A1I08 C26 C25 SING N N 33 A1I08 O36 C25 SING N N 34 A1I08 N04 C03 SING Y N 35 A1I08 C37 C03 DOUB Y N 36 A1I08 N38 C37 SING N N 37 A1I08 C39 N38 DOUB N N 38 A1I08 N40 C39 SING N N 39 A1I08 N41 C39 SING N N 40 A1I08 C02 N41 SING N N 41 A1I08 N06 C37 SING Y N 42 A1I08 C07 O36 SING N N 43 A1I08 N13 C23 SING N N 44 A1I08 C10 H101 SING N N 45 A1I08 C15 H151 SING N N 46 A1I08 C15 H152 SING N N 47 A1I08 C17 H171 SING N N 48 A1I08 C20 H201 SING N N 49 A1I08 C20 H202 SING N N 50 A1I08 C21 H212 SING N N 51 A1I08 C21 H213 SING N N 52 A1I08 C21 H211 SING N N 53 A1I08 C26 H261 SING N N 54 A1I08 C26 H262 SING N N 55 A1I08 C05 H051 SING N N 56 A1I08 C07 H071 SING N N 57 A1I08 C08 H081 SING N N 58 A1I08 C14 H141 SING N N 59 A1I08 C14 H142 SING N N 60 A1I08 C16 H161 SING N N 61 A1I08 C16 H162 SING N N 62 A1I08 C23 H231 SING N N 63 A1I08 C23 H232 SING N N 64 A1I08 C25 H251 SING N N 65 A1I08 N18 H181 SING N N 66 A1I08 N40 H402 SING N N 67 A1I08 N40 H401 SING N N 68 A1I08 N41 H411 SING N N 69 A1I08 O09 H091 SING N N 70 A1I08 O31 H1 SING N N 71 A1I08 O33 H2 SING N N 72 A1I08 O34 H3 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I08 InChI InChI 1.06 "InChI=1S/C19H29N7O13P2/c1-2-11(27)22-9-4-3-5-25(6-9)19(30)38-14-10(7-36-41(34,35)39-40(31,32)33)37-17(13(14)28)26-8-21-12-15(26)23-18(20)24-16(12)29/h8-10,13-14,17,28H,2-7H2,1H3,(H,22,27)(H,34,35)(H2,31,32,33)(H3,20,23,24,29)" A1I08 InChIKey InChI 1.06 MYQTYSMRPVTNKK-UHFFFAOYSA-N A1I08 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N[C@H]1CCCN(C1)C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N" A1I08 SMILES CACTVS 3.385 "CCC(=O)N[CH]1CCCN(C1)C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N" A1I08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N[C@H]1CCCN(C1)C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3N=C(NC4=O)N)COP(=O)(O)OP(=O)(O)O" A1I08 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)NC1CCCN(C1)C(=O)OC2C(OC(C2O)n3cnc4c3N=C(NC4=O)N)COP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id A1I08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] (3~{S})-3-(propanoylamino)piperidine-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I08 "Create component" 2025-02-05 PDBE A1I08 "Modify PCM" 2025-02-05 PDBE A1I08 "Initial release" 2025-11-12 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1I08 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #