data_A1I09 # _chem_comp.id A1I09 _chem_comp.name Clincelin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H39 Cl N2 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms " 2-[(2R,3R,4S,5R,6R)-6-[(1S,2S)-2-chloranyl-1-[[(2S,4R)-1-methyl-4-propyl-pyrrolidin-2-yl]carbonylamino]propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanylethyl 2-oxidanylbenzoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-05 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.114 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I88 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I09 C4 C1 C 0 1 N N R N N N 167.857 170.919 174.991 -1.098 2.013 1.335 C4 A1I09 1 A1I09 C5 C2 C 0 1 N N R N N N 168.350 170.099 172.818 0.576 2.565 -0.291 C5 A1I09 2 A1I09 C6 C3 C 0 1 N N N N N N 170.161 172.260 171.984 3.026 1.129 -0.282 C6 A1I09 3 A1I09 C8 C4 C 0 1 N N S N N N 169.879 171.386 176.321 -0.861 -0.428 0.861 C8 A1I09 4 A1I09 C10 C5 C 0 1 N N N N N N 166.955 171.570 178.381 -3.781 0.107 -0.302 C10 A1I09 5 A1I09 C13 C6 C 0 1 N N R N N N 166.699 173.681 181.244 -5.829 -2.425 -0.271 C13 A1I09 6 A1I09 C15 C7 C 0 1 N N N N N N 164.269 171.384 179.955 -6.881 0.762 -1.699 C15 A1I09 7 A1I09 C20 C8 C 0 1 N N N N N N 171.206 170.620 168.846 6.416 -0.326 -0.355 C20 A1I09 8 A1I09 C22 C9 C 0 1 Y N N N N N 170.912 168.155 169.068 8.414 -1.815 -0.297 C22 A1I09 9 A1I09 C24 C10 C 0 1 Y N N N N N 171.578 166.487 167.365 8.169 -4.168 0.095 C24 A1I09 10 A1I09 C26 C11 C 0 1 Y N N N N N 171.959 168.901 166.958 6.220 -2.774 0.053 C26 A1I09 11 A1I09 C9 C12 C 0 1 N N N N N N 170.520 171.197 177.697 -1.355 -1.586 -0.008 C9 A1I09 12 A1I09 C18 C13 C 0 1 N N N N N N 167.703 177.361 181.862 -7.907 -5.664 -0.137 C18 A1I09 13 A1I09 C16 C14 C 0 1 N N N N N N 166.528 175.150 181.685 -6.714 -3.519 0.330 C16 A1I09 14 A1I09 C12 C15 C 0 1 N N N N N N 167.101 173.618 179.800 -5.522 -1.321 0.776 C12 A1I09 15 A1I09 C23 C16 C 0 1 Y N N N N N 171.039 166.717 168.546 8.976 -3.075 -0.147 C23 A1I09 16 A1I09 C25 C17 C 0 1 Y N N N N N 172.072 167.661 166.514 6.795 -4.019 0.189 C25 A1I09 17 A1I09 C1 C18 C 0 1 N N R N N N 166.963 169.507 172.665 -0.158 3.850 -0.682 C1 A1I09 18 A1I09 C2 C19 C 0 1 N N S N N N 165.969 170.167 173.593 -1.661 3.659 -0.455 C2 A1I09 19 A1I09 C3 C20 C 0 1 N N R N N N 166.511 170.212 175.018 -1.900 3.276 1.009 C3 A1I09 20 A1I09 C11 C21 C 0 1 N N S N N N 166.168 172.595 179.215 -5.262 -0.076 -0.098 C11 A1I09 21 A1I09 C14 C22 C 0 1 N N N N N N 165.387 172.930 181.390 -6.594 -1.625 -1.354 C14 A1I09 22 A1I09 C17 C23 C 0 1 N N N N N N 167.817 175.911 181.361 -7.021 -4.570 -0.738 C17 A1I09 23 A1I09 C19 C24 C 0 1 N N N N N N 170.662 172.217 170.527 4.549 1.162 -0.424 C19 A1I09 24 A1I09 C21 C25 C 0 1 Y N N N N N 171.327 169.168 168.326 7.025 -1.659 -0.198 C21 A1I09 25 A1I09 C7 C26 C 0 1 N N S N N N 168.435 170.980 176.399 -1.593 0.856 0.466 C7 A1I09 26 A1I09 N1 N1 N 0 1 N N N N N N 167.708 171.992 177.168 -3.033 0.678 0.664 N1 A1I09 27 A1I09 N2 N2 N 0 1 N N N N N N 165.536 171.908 180.331 -5.922 -0.309 -1.397 N2 A1I09 28 A1I09 O10 O1 O 0 1 N N N N N N 170.333 168.392 170.321 9.206 -0.740 -0.534 O10 A1I09 29 A1I09 O2 O2 O 0 1 N N N N N N 170.685 170.864 170.130 5.079 -0.180 -0.258 O2 A1I09 30 A1I09 O3 O3 O 0 1 N N N N N N 171.573 171.524 168.174 7.118 0.641 -0.572 O3 A1I09 31 A1I09 O4 O4 O 0 1 N N N N N N 166.524 169.741 171.354 0.313 4.933 0.122 O4 A1I09 32 A1I09 O5 O5 O 0 1 N N N N N N 168.718 170.193 174.165 0.287 2.249 1.073 O5 A1I09 33 A1I09 O6 O6 O 0 1 N N N N N N 164.804 169.400 173.589 -2.145 2.619 -1.306 O6 A1I09 34 A1I09 O7 O7 O 0 1 N N N N N N 166.679 168.904 175.444 -3.291 3.025 1.216 O7 A1I09 35 A1I09 O9 O8 O 0 1 N N N N N N 166.958 170.434 178.702 -3.261 -0.258 -1.335 O9 A1I09 36 A1I09 S1 S1 S 0 1 N N N N N N 168.403 171.751 172.034 2.364 2.805 -0.489 S1 A1I09 37 A1I09 CL1 CL1 CL 0 0 N N N N N N 169.967 173.112 175.849 -1.188 -0.797 2.596 CL1 A1I09 38 A1I09 HC H1 H 0 1 N N N N N N 167.720 171.943 174.613 -1.230 1.760 2.387 HC A1I09 39 A1I09 HC3 H2 H 0 1 N N N N N N 169.069 169.481 172.260 0.246 1.747 -0.931 HC3 A1I09 40 A1I09 HC4 H3 H 0 1 N N N N N N 170.259 173.283 172.376 2.604 0.475 -1.045 HC4 A1I09 41 A1I09 HC5 H4 H 0 1 N N N N N N 170.760 171.573 172.599 2.761 0.753 0.706 HC5 A1I09 42 A1I09 H8 H5 H 0 1 N N N N N N 170.415 170.804 175.557 0.211 -0.295 0.714 H8 A1I09 43 A1I09 HC11 H6 H 0 0 N N N N N N 167.469 173.202 181.867 -4.909 -2.848 -0.674 HC11 A1I09 44 A1I09 HC31 H7 H 0 0 N N N N N N 163.814 170.871 180.815 -6.357 1.718 -1.739 HC31 A1I09 45 A1I09 HC32 H8 H 0 0 N N N N N N 163.614 172.206 179.630 -7.353 0.566 -2.662 HC32 A1I09 46 A1I09 HC33 H9 H 0 0 N N N N N N 164.398 170.670 179.129 -7.643 0.798 -0.921 HC33 A1I09 47 A1I09 HC21 H10 H 0 0 N N N N N N 171.671 165.475 166.999 8.611 -5.148 0.202 HC21 A1I09 48 A1I09 HC23 H11 H 0 0 N N N N N N 172.312 169.725 166.356 5.149 -2.662 0.126 HC23 A1I09 49 A1I09 HC26 H12 H 0 0 N N N N N N 171.579 171.491 177.652 -2.427 -1.718 0.139 HC26 A1I09 50 A1I09 HC27 H13 H 0 0 N N N N N N 169.996 171.823 178.434 -1.158 -1.363 -1.057 HC27 A1I09 51 A1I09 HC25 H14 H 0 0 N N N N N N 170.446 170.140 177.994 -0.834 -2.500 0.273 HC25 A1I09 52 A1I09 HC30 H15 H 0 0 N N N N N N 168.630 177.904 181.628 -8.125 -6.413 -0.897 HC30 A1I09 53 A1I09 HC29 H16 H 0 0 N N N N N N 166.854 177.854 181.366 -7.387 -6.135 0.698 HC29 A1I09 54 A1I09 HC28 H17 H 0 0 N N N N N N 167.543 177.361 182.950 -8.839 -5.223 0.218 HC28 A1I09 55 A1I09 HC16 H18 H 0 0 N N N N N N 165.684 175.603 181.144 -6.195 -3.989 1.165 HC16 A1I09 56 A1I09 HC15 H19 H 0 0 N N N N N N 166.335 175.192 182.767 -7.646 -3.078 0.685 HC15 A1I09 57 A1I09 HC9 H20 H 0 1 N N N N N N 168.148 173.298 179.698 -6.379 -1.161 1.430 HC9 A1I09 58 A1I09 HC10 H21 H 0 0 N N N N N N 166.967 174.595 179.313 -4.637 -1.578 1.358 HC10 A1I09 59 A1I09 HC24 H22 H 0 0 N N N N N N 170.686 165.892 169.147 10.047 -3.200 -0.219 HC24 A1I09 60 A1I09 HC22 H23 H 0 0 N N N N N N 172.515 167.475 165.547 6.172 -4.882 0.370 HC22 A1I09 61 A1I09 HC18 H24 H 0 0 N N N N N N 167.002 168.429 172.880 0.026 4.068 -1.734 HC18 A1I09 62 A1I09 HC17 H25 H 0 0 N N N N N N 165.770 171.192 173.248 -2.184 4.589 -0.679 HC17 A1I09 63 A1I09 HC12 H26 H 0 0 N N N N N N 165.813 170.765 175.663 -1.576 4.091 1.656 HC12 A1I09 64 A1I09 HC6 H27 H 0 1 N N N N N N 165.415 173.087 178.582 -5.683 0.808 0.381 HC6 A1I09 65 A1I09 HC1 H28 H 0 1 N N N N N N 165.291 172.471 182.385 -6.515 -2.123 -2.320 HC1 A1I09 66 A1I09 HC2 H29 H 0 1 N N N N N N 164.523 173.584 181.203 -7.640 -1.508 -1.071 HC2 A1I09 67 A1I09 HC13 H30 H 0 0 N N N N N N 168.667 175.419 181.857 -6.090 -5.011 -1.092 HC13 A1I09 68 A1I09 HC14 H31 H 0 0 N N N N N N 167.977 175.912 180.273 -7.541 -4.100 -1.572 HC14 A1I09 69 A1I09 HC20 H32 H 0 0 N N N N N N 169.982 172.788 169.878 4.814 1.537 -1.412 HC20 A1I09 70 A1I09 HC19 H33 H 0 0 N N N N N N 171.673 172.645 170.464 4.971 1.816 0.339 HC19 A1I09 71 A1I09 HC7 H34 H 0 1 N N N N N N 168.347 169.994 176.879 -1.395 1.079 -0.583 HC7 A1I09 72 A1I09 HN1 H35 H 0 1 N N N N N N 167.717 172.951 176.883 -3.449 0.970 1.490 HN1 A1I09 73 A1I09 H9 H37 H 0 1 N N N N N N 170.092 167.565 170.721 9.361 -0.565 -1.472 H9 A1I09 74 A1I09 HO4 H38 H 0 1 N N N N N N 167.128 169.338 170.741 1.259 5.110 0.027 HO4 A1I09 75 A1I09 HO6 H39 H 0 1 N N N N N N 164.162 169.796 174.167 -2.020 2.792 -2.249 HO6 A1I09 76 A1I09 HO7 H40 H 0 1 N N N N N N 167.017 168.901 176.332 -3.861 3.783 1.023 HO7 A1I09 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I09 C1 C2 SING N N 1 A1I09 C1 C5 SING N N 2 A1I09 C1 O4 SING N N 3 A1I09 C10 C11 SING N N 4 A1I09 C10 N1 SING N N 5 A1I09 C10 O9 DOUB N N 6 A1I09 C11 C12 SING N N 7 A1I09 C11 N2 SING N N 8 A1I09 C12 C13 SING N N 9 A1I09 C13 C14 SING N N 10 A1I09 C13 C16 SING N N 11 A1I09 C14 N2 SING N N 12 A1I09 C15 N2 SING N N 13 A1I09 C16 C17 SING N N 14 A1I09 C17 C18 SING N N 15 A1I09 C2 C3 SING N N 16 A1I09 C2 O6 SING N N 17 A1I09 C3 C4 SING N N 18 A1I09 C3 O7 SING N N 19 A1I09 C4 C7 SING N N 20 A1I09 C4 O5 SING N N 21 A1I09 C5 O5 SING N N 22 A1I09 C5 S1 SING N N 23 A1I09 C6 S1 SING N N 24 A1I09 C6 C19 SING N N 25 A1I09 C7 C8 SING N N 26 A1I09 C7 N1 SING N N 27 A1I09 C8 C9 SING N N 28 A1I09 C8 CL1 SING N N 29 A1I09 O2 C19 SING N N 30 A1I09 O2 C20 SING N N 31 A1I09 O3 C20 DOUB N N 32 A1I09 C20 C21 SING N N 33 A1I09 C21 C22 DOUB Y N 34 A1I09 C21 C26 SING Y N 35 A1I09 C22 C23 SING Y N 36 A1I09 C22 O10 SING N N 37 A1I09 C23 C24 DOUB Y N 38 A1I09 C24 C25 SING Y N 39 A1I09 C25 C26 DOUB Y N 40 A1I09 C4 HC SING N N 41 A1I09 C5 HC3 SING N N 42 A1I09 C6 HC4 SING N N 43 A1I09 C6 HC5 SING N N 44 A1I09 C8 H8 SING N N 45 A1I09 C13 HC11 SING N N 46 A1I09 C15 HC31 SING N N 47 A1I09 C15 HC32 SING N N 48 A1I09 C15 HC33 SING N N 49 A1I09 C24 HC21 SING N N 50 A1I09 C26 HC23 SING N N 51 A1I09 C9 HC26 SING N N 52 A1I09 C9 HC27 SING N N 53 A1I09 C9 HC25 SING N N 54 A1I09 C18 HC30 SING N N 55 A1I09 C18 HC29 SING N N 56 A1I09 C18 HC28 SING N N 57 A1I09 C16 HC16 SING N N 58 A1I09 C16 HC15 SING N N 59 A1I09 C12 HC9 SING N N 60 A1I09 C12 HC10 SING N N 61 A1I09 C23 HC24 SING N N 62 A1I09 C25 HC22 SING N N 63 A1I09 C1 HC18 SING N N 64 A1I09 C2 HC17 SING N N 65 A1I09 C3 HC12 SING N N 66 A1I09 C11 HC6 SING N N 67 A1I09 C14 HC1 SING N N 68 A1I09 C14 HC2 SING N N 69 A1I09 C17 HC13 SING N N 70 A1I09 C17 HC14 SING N N 71 A1I09 C19 HC20 SING N N 72 A1I09 C19 HC19 SING N N 73 A1I09 C7 HC7 SING N N 74 A1I09 N1 HN1 SING N N 75 A1I09 O10 H9 SING N N 76 A1I09 O4 HO4 SING N N 77 A1I09 O6 HO6 SING N N 78 A1I09 O7 HO7 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I09 InChI InChI 1.06 "InChI=1S/C26H39ClN2O8S/c1-4-7-15-12-17(29(3)13-15)24(34)28-19(14(2)27)23-21(32)20(31)22(33)26(37-23)38-11-10-36-25(35)16-8-5-6-9-18(16)30/h5-6,8-9,14-15,17,19-23,26,30-33H,4,7,10-13H2,1-3H3,(H,28,34)/t14-,15+,17-,19+,20-,21+,22+,23+,26+/m0/s1" A1I09 InChIKey InChI 1.06 PUOVWKKWTASHAN-VSDRAVLQSA-N A1I09 SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@H]([C@H](C)Cl)[C@H]2O[C@H](SCCOC(=O)c3ccccc3O)[C@H](O)[C@@H](O)[C@H]2O" A1I09 SMILES CACTVS 3.385 "CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH](C)Cl)[CH]2O[CH](SCCOC(=O)c3ccccc3O)[CH](O)[CH](O)[CH]2O" A1I09 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]1C[C@H](N(C1)C)C(=O)N[C@@H]([C@@H]2[C@@H]([C@@H]([C@H]([C@H](O2)SCCOC(=O)c3ccccc3O)O)O)O)[C@H](C)Cl" A1I09 SMILES "OpenEye OEToolkits" 2.0.7 "CCCC1CC(N(C1)C)C(=O)NC(C2C(C(C(C(O2)SCCOC(=O)c3ccccc3O)O)O)O)C(C)Cl" # _pdbx_chem_comp_identifier.comp_id A1I09 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(1~{S},2~{S})-2-chloranyl-1-[[(2~{S},4~{R})-1-methyl-4-propyl-pyrrolidin-2-yl]carbonylamino]propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanylethyl 2-oxidanylbenzoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1I09 _pdbx_chem_comp_synonyms.name " 2-[(2R,3R,4S,5R,6R)-6-[(1S,2S)-2-chloranyl-1-[[(2S,4R)-1-methyl-4-propyl-pyrrolidin-2-yl]carbonylamino]propyl]-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanylethyl 2-oxidanylbenzoate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I09 "Create component" 2025-02-05 PDBE A1I09 "Modify name" 2026-03-11 PDBE A1I09 "Initial release" 2026-04-15 RCSB #