data_A1I16 # _chem_comp.id A1I16 _chem_comp.name "1-[3-[[5-(4,6-dimethylpyrimidin-5-yl)pyridin-2-yl]methyl]-1-oxa-2,3$l^{4}-diazacyclopenta-2,4-dien-5-yl]-3-[3-(trifluoromethyl)phenyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 F3 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-02-17 _chem_comp.pdbx_modified_date 2025-11-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I16 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IBY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I16 C1 C1 C 0 1 N N N N N N -40.854 -10.630 -14.820 -5.023 -2.708 0.242 C1 A1I16 1 A1I16 C2 C2 C 0 1 Y N N N N N -41.379 -11.133 -16.140 -6.448 -2.272 0.021 C2 A1I16 2 A1I16 C4 C3 C 0 1 Y N N N N N -42.878 -12.499 -17.237 -8.663 -2.794 -0.294 C4 A1I16 3 A1I16 C6 C4 C 0 1 Y N N N N N -41.425 -11.254 -18.553 -8.106 -0.565 -0.272 C6 A1I16 4 A1I16 C7 C5 C 0 1 N N N N N N -40.990 -10.891 -19.961 -8.512 0.883 -0.373 C7 A1I16 5 A1I16 C8 C6 C 0 1 Y N N N N N -40.860 -10.702 -17.380 -6.769 -0.915 -0.066 C8 A1I16 6 A1I16 C11 C7 C 0 1 Y N N N N N -38.824 -7.521 -17.708 -4.721 1.966 1.209 C11 A1I16 7 A1I16 C12 C8 C 0 1 Y N N N N N -37.562 -8.073 -17.613 -3.748 1.998 0.227 C12 A1I16 8 A1I16 C15 C9 C 0 1 Y N N N N N -36.061 -6.904 -15.229 -0.356 2.602 -0.606 C15 A1I16 9 A1I16 C16 C10 C 0 1 Y N N N N N -35.144 -7.320 -14.294 0.640 1.737 -0.262 C16 A1I16 10 A1I16 C18 C11 C 0 1 N N N N N N -35.898 -6.299 -12.197 2.765 0.699 -0.400 C18 A1I16 11 A1I16 C21 C12 C 0 1 Y N N N N N -36.425 -5.505 -9.911 4.924 -0.301 -0.444 C21 A1I16 12 A1I16 C23 C13 C 0 1 Y N N N N N -36.879 -5.079 -7.572 5.458 -2.365 0.653 C23 A1I16 13 A1I16 C24 C14 C 0 1 Y N N N N N -37.808 -4.108 -7.905 6.801 -2.039 0.610 C24 A1I16 14 A1I16 C27 C15 C 0 1 N N N N N N -39.073 -2.796 -9.606 8.672 -0.495 -0.005 C27 A1I16 15 A1I16 C34 C16 C 0 1 Y N N N N N -38.451 -10.212 -17.373 -4.710 0.231 -0.896 C34 A1I16 16 A1I16 N3 N1 N 0 1 Y N N N N N -42.376 -12.017 -16.116 -7.414 -3.167 -0.100 N3 A1I16 17 A1I16 N5 N2 N 0 1 Y N N N N N -42.417 -12.128 -18.421 -9.009 -1.525 -0.377 N5 A1I16 18 A1I16 C9 C17 C 0 1 Y N N N N N -39.745 -9.732 -17.459 -5.719 0.127 0.058 C9 A1I16 19 A1I16 C10 C18 C 0 1 Y N N N N N -39.934 -8.356 -17.639 -5.727 1.019 1.134 C10 A1I16 20 A1I16 C13 C19 C 0 1 N N N N N N -36.299 -7.259 -17.687 -2.646 3.023 0.308 C13 A1I16 21 A1I16 N14 N3 N 1 1 Y N N N N N -35.639 -7.410 -16.400 -1.347 2.349 0.263 N14 A1I16 22 A1I16 N17 N4 N 0 1 N N N N N N -35.080 -7.104 -12.920 1.885 1.610 -0.862 N17 A1I16 23 A1I16 O19 O1 O 0 1 N N N N N N -36.775 -5.657 -12.754 2.468 -0.012 0.540 O19 A1I16 24 A1I16 N20 N5 N 0 1 N N N N N N -35.684 -6.248 -10.857 3.974 0.576 -0.982 N20 A1I16 25 A1I16 C22 C20 C 0 1 Y N N N N N -36.187 -5.768 -8.560 4.518 -1.500 0.128 C22 A1I16 26 A1I16 C25 C21 C 0 1 Y N N N N N -38.053 -3.828 -9.234 7.208 -0.846 0.040 C25 A1I16 27 A1I16 C26 C22 C 0 1 Y N N N N N -37.369 -4.517 -10.222 6.273 0.024 -0.487 C26 A1I16 28 A1I16 F28 F1 F 0 1 N N N N N N -38.868 -2.283 -10.860 9.417 -1.522 0.585 F28 A1I16 29 A1I16 F29 F2 F 0 1 N N N N N N -39.021 -1.732 -8.752 9.072 -0.334 -1.337 F29 A1I16 30 A1I16 F30 F3 F 0 1 N N N N N N -40.351 -3.310 -9.579 8.888 0.698 0.693 F30 A1I16 31 A1I16 O31 O2 O 0 1 Y N N N N N -34.258 -8.053 -14.981 0.163 1.032 0.779 O31 A1I16 32 A1I16 N32 N6 N 0 1 Y N N N N N -34.566 -8.075 -16.169 -0.956 1.409 1.050 N32 A1I16 33 A1I16 N33 N7 N 0 1 Y N N N N N -37.431 -9.376 -17.451 -3.769 1.146 -0.779 N33 A1I16 34 A1I16 H1 H1 H 0 1 N N N N N N -41.413 -11.103 -13.999 -4.828 -2.784 1.312 H1 A1I16 35 A1I16 H2 H2 H 0 1 N N N N N N -39.787 -10.882 -14.730 -4.864 -3.680 -0.225 H2 A1I16 36 A1I16 H3 H3 H 0 1 N N N N N N -40.979 -9.538 -14.768 -4.346 -1.977 -0.200 H3 A1I16 37 A1I16 H4 H4 H 0 1 N N N N N N -43.686 -13.214 -17.187 -9.427 -3.552 -0.384 H4 A1I16 38 A1I16 H7 H5 H 0 1 N N N N N N -41.603 -11.443 -20.689 -8.460 1.202 -1.414 H7 A1I16 39 A1I16 H5 H6 H 0 1 N N N N N N -41.120 -9.810 -20.118 -9.531 1.001 -0.007 H5 A1I16 40 A1I16 H6 H7 H 0 1 N N N N N N -39.931 -11.156 -20.097 -7.837 1.492 0.228 H6 A1I16 41 A1I16 H9 H8 H 0 1 N N N N N N -38.947 -6.456 -17.834 -4.693 2.669 2.029 H9 A1I16 42 A1I16 H12 H9 H 0 1 N N N N N N -36.938 -6.297 -15.058 -0.348 3.334 -1.401 H12 A1I16 43 A1I16 H15 H10 H 0 1 N N N N N N -36.690 -5.303 -6.533 5.143 -3.297 1.099 H15 A1I16 44 A1I16 H16 H11 H 0 1 N N N N N N -38.337 -3.573 -7.130 7.534 -2.716 1.022 H16 A1I16 45 A1I16 H18 H12 H 0 1 N N N N N N -38.274 -11.269 -17.242 -4.691 -0.452 -1.732 H18 A1I16 46 A1I16 H8 H13 H 0 1 N N N N N N -40.930 -7.948 -17.723 -6.500 0.971 1.887 H8 A1I16 47 A1I16 H11 H14 H 0 1 N N N N N N -35.651 -7.634 -18.493 -2.727 3.711 -0.534 H11 A1I16 48 A1I16 H10 H15 H 0 1 N N N N N N -36.538 -6.201 -17.870 -2.735 3.579 1.241 H10 A1I16 49 A1I16 H19 H16 H 0 1 N N N N N N -34.363 -7.588 -12.419 2.122 2.176 -1.612 H19 A1I16 50 A1I16 H13 H17 H 0 1 N N N N N N -34.923 -6.793 -10.503 4.187 1.094 -1.774 H13 A1I16 51 A1I16 H14 H18 H 0 1 N N N N N N -35.458 -6.514 -8.281 3.469 -1.755 0.163 H14 A1I16 52 A1I16 H17 H19 H 0 1 N N N N N N -37.568 -4.287 -11.258 6.591 0.955 -0.932 H17 A1I16 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I16 C1 C2 SING N N 1 A1I16 C2 C8 DOUB Y N 2 A1I16 C2 N3 SING Y N 3 A1I16 N3 C4 DOUB Y N 4 A1I16 C4 N5 SING Y N 5 A1I16 N5 C6 DOUB Y N 6 A1I16 C6 C7 SING N N 7 A1I16 C6 C8 SING Y N 8 A1I16 C8 C9 SING N N 9 A1I16 C9 C34 DOUB Y N 10 A1I16 C9 C10 SING Y N 11 A1I16 C10 C11 DOUB Y N 12 A1I16 C11 C12 SING Y N 13 A1I16 C12 C13 SING N N 14 A1I16 C12 N33 DOUB Y N 15 A1I16 C13 N14 SING N N 16 A1I16 N14 N32 DOUB Y N 17 A1I16 N14 C15 SING Y N 18 A1I16 C15 C16 DOUB Y N 19 A1I16 C16 N17 SING N N 20 A1I16 C16 O31 SING Y N 21 A1I16 N17 C18 SING N N 22 A1I16 C18 O19 DOUB N N 23 A1I16 C18 N20 SING N N 24 A1I16 N20 C21 SING N N 25 A1I16 C21 C26 DOUB Y N 26 A1I16 C21 C22 SING Y N 27 A1I16 C22 C23 DOUB Y N 28 A1I16 C23 C24 SING Y N 29 A1I16 C24 C25 DOUB Y N 30 A1I16 C25 C26 SING Y N 31 A1I16 C25 C27 SING N N 32 A1I16 C27 F28 SING N N 33 A1I16 C27 F29 SING N N 34 A1I16 C27 F30 SING N N 35 A1I16 O31 N32 SING Y N 36 A1I16 N33 C34 SING Y N 37 A1I16 C1 H1 SING N N 38 A1I16 C1 H2 SING N N 39 A1I16 C1 H3 SING N N 40 A1I16 C4 H4 SING N N 41 A1I16 C7 H7 SING N N 42 A1I16 C7 H5 SING N N 43 A1I16 C7 H6 SING N N 44 A1I16 C11 H9 SING N N 45 A1I16 C15 H12 SING N N 46 A1I16 C23 H15 SING N N 47 A1I16 C24 H16 SING N N 48 A1I16 C34 H18 SING N N 49 A1I16 C10 H8 SING N N 50 A1I16 C13 H11 SING N N 51 A1I16 C13 H10 SING N N 52 A1I16 N17 H19 SING N N 53 A1I16 N20 H13 SING N N 54 A1I16 C22 H14 SING N N 55 A1I16 C26 H17 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I16 InChI InChI 1.06 "InChI=1S/C22H18F3N7O2/c1-13-20(14(2)28-12-27-13)15-6-7-18(26-9-15)10-32-11-19(34-31-32)30-21(33)29-17-5-3-4-16(8-17)22(23,24)25/h3-9,11-12H,10H2,1-2H3,(H-,29,30,31,33)/p+1" A1I16 InChIKey InChI 1.06 JJQASPUODGTFMB-UHFFFAOYSA-O A1I16 SMILES_CANONICAL CACTVS 3.385 "Cc1ncnc(C)c1c2ccc(C[n+]3cc(NC(=O)Nc4cccc(c4)C(F)(F)F)on3)nc2" A1I16 SMILES CACTVS 3.385 "Cc1ncnc(C)c1c2ccc(C[n+]3cc(NC(=O)Nc4cccc(c4)C(F)(F)F)on3)nc2" A1I16 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(ncn1)C)c2ccc(nc2)C[n+]3cc(on3)NC(=O)Nc4cccc(c4)C(F)(F)F" A1I16 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(ncn1)C)c2ccc(nc2)C[n+]3cc(on3)NC(=O)Nc4cccc(c4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1I16 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3-[[5-(4,6-dimethylpyrimidin-5-yl)pyridin-2-yl]methyl]-1,2,3-oxadiazol-3-ium-5-yl]-3-[3-(trifluoromethyl)phenyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I16 "Create component" 2025-02-17 PDBE A1I16 "Initial release" 2025-12-03 RCSB #