data_A1I1D # _chem_comp.id A1I1D _chem_comp.name "1-[4,7-bis(2-chloranylethanoyl)-1,4,7-triazonan-1-yl]-2-chloranyl-ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 Cl3 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-06 _chem_comp.pdbx_modified_date 2025-10-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.649 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I1D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I97 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I1D C14 C1 C 0 1 N N N N N N 114.856 159.608 140.620 0.664 0.420 -2.431 C14 A1I1D 1 A1I1D C01 C2 C 0 1 N N N N N N 110.004 163.847 140.179 0.939 -2.223 0.914 C01 A1I1D 2 A1I1D C02 C3 C 0 1 N N N N N N 111.279 164.289 140.953 -0.083 -2.071 -0.182 C02 A1I1D 3 A1I1D C04 C4 C 0 1 N N N N N N 113.642 164.693 141.281 -1.833 -1.617 1.515 C04 A1I1D 4 A1I1D C05 C5 C 0 1 N N N N N N 114.812 163.716 141.339 -2.568 -0.295 1.763 C05 A1I1D 5 A1I1D C07 C6 C 0 1 N N N N N N 116.733 164.696 140.319 -0.362 0.868 1.879 C07 A1I1D 6 A1I1D C08 C7 C 0 1 N N N N N N 117.841 164.877 139.268 0.579 1.934 1.381 C08 A1I1D 7 A1I1D C10 C8 C 0 1 N N N N N N 115.981 162.944 138.923 -2.188 1.835 0.508 C10 A1I1D 8 A1I1D C11 C9 C 0 1 N N N N N N 115.347 161.579 138.769 -2.749 1.292 -0.811 C11 A1I1D 9 A1I1D C13 C10 C 0 1 N N N N N N 113.717 160.483 140.186 -0.423 1.173 -1.709 C13 A1I1D 10 A1I1D C16 C11 C 0 1 N N N N N N 112.574 162.156 138.963 -1.948 -0.761 -1.993 C16 A1I1D 11 A1I1D C17 C12 C 0 1 N N N N N N 112.620 163.663 138.999 -2.446 -1.721 -0.907 C17 A1I1D 12 A1I1D N03 N1 N 0 1 N N N N N N 112.640 164.197 140.339 -1.371 -1.819 0.127 N03 A1I1D 13 A1I1D N06 N2 N 0 1 N N N N N N 115.702 163.654 140.174 -1.624 0.811 1.411 N06 A1I1D 14 A1I1D N12 N3 N 0 1 N N N N N N 113.939 161.527 139.168 -1.628 0.600 -1.519 N12 A1I1D 15 A1I1D O09 O1 O 0 1 N N N N N N 116.712 165.410 141.254 0.017 0.061 2.701 O09 A1I1D 16 A1I1D O15 O2 O 0 1 N N N N N N 112.730 160.140 140.734 -0.213 2.295 -1.299 O15 A1I1D 17 A1I1D O18 O3 O 0 1 N N N N N N 111.184 164.728 142.068 0.252 -2.175 -1.343 O18 A1I1D 18 A1I1D H1 H1 H 0 1 N N N N N N 115.257 160.274 141.398 0.892 -0.498 -1.890 H1 A1I1D 19 A1I1D H2 H2 H 0 1 N N N N N N 114.254 158.816 141.090 0.328 0.174 -3.439 H2 A1I1D 20 A1I1D H4 H4 H 0 1 N N N N N N 109.860 162.805 140.500 1.076 -1.266 1.419 H4 A1I1D 21 A1I1D H5 H5 H 0 1 N N N N N N 109.213 164.477 140.612 0.594 -2.967 1.633 H5 A1I1D 22 A1I1D H7 H7 H 0 1 N N N N N N 114.002 165.678 140.948 -0.967 -1.658 2.176 H7 A1I1D 23 A1I1D H8 H8 H 0 1 N N N N N N 113.192 164.786 142.280 -2.502 -2.437 1.776 H8 A1I1D 24 A1I1D H9 H9 H 0 1 N N N N N N 114.394 162.710 141.488 -3.455 -0.240 1.133 H9 A1I1D 25 A1I1D H10 H10 H 0 1 N N N N N N 115.427 163.990 142.209 -2.853 -0.220 2.813 H10 A1I1D 26 A1I1D H11 H11 H 0 1 N N N N N N 117.731 164.341 138.313 0.791 1.767 0.325 H11 A1I1D 27 A1I1D H12 H12 H 0 1 N N N N N N 118.200 165.899 139.076 0.119 2.914 1.508 H12 A1I1D 28 A1I1D H14 H14 H 0 1 N N N N N N 117.071 162.817 138.846 -1.406 2.559 0.278 H14 A1I1D 29 A1I1D H15 H15 H 0 1 N N N N N N 115.625 163.574 138.094 -2.990 2.353 1.033 H15 A1I1D 30 A1I1D H16 H16 H 0 1 N N N N N N 115.418 161.282 137.712 -3.553 0.584 -0.609 H16 A1I1D 31 A1I1D H17 H17 H 0 1 N N N N N N 115.909 160.865 139.389 -3.122 2.114 -1.422 H17 A1I1D 32 A1I1D H18 H18 H 0 1 N N N N N N 111.901 161.805 139.759 -1.052 -1.188 -2.445 H18 A1I1D 33 A1I1D H19 H19 H 0 1 N N N N N N 112.183 161.838 137.985 -2.714 -0.686 -2.764 H19 A1I1D 34 A1I1D H20 H20 H 0 1 N N N N N N 113.527 163.998 138.475 -3.359 -1.330 -0.457 H20 A1I1D 35 A1I1D H21 H21 H 0 1 N N N N N N 111.732 164.053 138.480 -2.636 -2.704 -1.339 H21 A1I1D 36 A1I1D CL2 CL2 CL 0 0 N Y N N N N 116.546 158.509 140.320 2.145 1.444 -2.526 CL2 A1I1D 37 A1I1D CL1 CL1 CL 0 0 N Y N N N N 118.653 163.878 140.809 2.117 1.866 2.320 CL1 A1I1D 38 A1I1D CL3 CL3 CL 0 0 N Y N N N N 109.538 163.798 138.211 2.508 -2.757 0.203 CL3 A1I1D 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I1D C11 C10 SING N N 1 A1I1D C11 N12 SING N N 2 A1I1D C10 N06 SING N N 3 A1I1D C16 C17 SING N N 4 A1I1D C16 N12 SING N N 5 A1I1D C17 N03 SING N N 6 A1I1D N12 C13 SING N N 7 A1I1D C08 C07 SING N N 8 A1I1D N06 C07 SING N N 9 A1I1D N06 C05 SING N N 10 A1I1D C01 C02 SING N N 11 A1I1D C13 C14 SING N N 12 A1I1D C13 O15 DOUB N N 13 A1I1D C07 O09 DOUB N N 14 A1I1D N03 C02 SING N N 15 A1I1D N03 C04 SING N N 16 A1I1D C02 O18 DOUB N N 17 A1I1D C04 C05 SING N N 18 A1I1D C14 H1 SING N N 19 A1I1D C14 H2 SING N N 20 A1I1D C01 H4 SING N N 21 A1I1D C01 H5 SING N N 22 A1I1D C04 H7 SING N N 23 A1I1D C04 H8 SING N N 24 A1I1D C05 H9 SING N N 25 A1I1D C05 H10 SING N N 26 A1I1D C08 H11 SING N N 27 A1I1D C08 H12 SING N N 28 A1I1D C10 H14 SING N N 29 A1I1D C10 H15 SING N N 30 A1I1D C11 H16 SING N N 31 A1I1D C11 H17 SING N N 32 A1I1D C16 H18 SING N N 33 A1I1D C16 H19 SING N N 34 A1I1D C17 H20 SING N N 35 A1I1D C17 H21 SING N N 36 A1I1D C14 CL2 SING N N 37 A1I1D C08 CL1 SING N N 38 A1I1D C01 CL3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I1D InChI InChI 1.06 "InChI=1S/C12H18Cl3N3O3/c13-7-10(19)16-1-2-17(11(20)8-14)5-6-18(4-3-16)12(21)9-15/h1-9H2" A1I1D InChIKey InChI 1.06 VITRFBWOHICMMS-UHFFFAOYSA-N A1I1D SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)N1CCN(CCN(CC1)C(=O)CCl)C(=O)CCl" A1I1D SMILES CACTVS 3.385 "ClCC(=O)N1CCN(CCN(CC1)C(=O)CCl)C(=O)CCl" A1I1D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CN(CCN(CCN1C(=O)CCl)C(=O)CCl)C(=O)CCl" A1I1D SMILES "OpenEye OEToolkits" 2.0.7 "C1CN(CCN(CCN1C(=O)CCl)C(=O)CCl)C(=O)CCl" # _pdbx_chem_comp_identifier.comp_id A1I1D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4,7-bis(2-chloranylethanoyl)-1,4,7-triazonan-1-yl]-2-chloranyl-ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I1D "Create component" 2025-02-06 PDBE A1I1D "Modify PCM" 2025-02-06 PDBE A1I1D "Modify PCM" 2025-08-14 PDBE A1I1D "Initial release" 2025-10-15 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 A1I1D CYS None Crosslinker "Amino-acid side chain" "Any position" C08 SG ? ? 2 A1I1D CYS None Crosslinker "Amino-acid side chain" "Any position" C14 SG ? ? 3 A1I1D CYS None Crosslinker "Amino-acid side chain" "Any position" C01 SG ? ? 4 A1I1D CYS None Crosslinker "Amino-acid side chain" "Any position" C07 SG ? ? #