data_A1I1F # _chem_comp.id A1I1F _chem_comp.name "methyl 4-[4-[4-[[(6S,6aS)-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6a,7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]furan-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H31 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-07 _chem_comp.pdbx_modified_date 2026-01-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I1F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I3G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I1F C1 C1 C 0 1 N N S N N N -5.635 34.080 -1.680 -8.249 -1.160 0.844 C1 A1I1F 1 A1I1F C2 C2 C 0 1 N N N N N N -4.988 33.705 -3.024 -9.354 -1.956 1.583 C2 A1I1F 2 A1I1F C3 C3 C 0 1 N N N N N N -3.627 34.400 -3.064 -10.680 -1.410 0.997 C3 A1I1F 3 A1I1F C4 C4 C 0 1 N N N N N N -3.263 34.593 -1.617 -10.264 -1.061 -0.458 C4 A1I1F 4 A1I1F C6 C5 C 0 1 N N N N N N -4.721 35.595 0.095 -8.357 0.587 -0.916 C6 A1I1F 5 A1I1F C8 C6 C 0 1 Y N N N N N -6.087 35.686 0.696 -6.918 0.832 -0.577 C8 A1I1F 6 A1I1F C9 C7 C 0 1 Y N N N N N -6.482 36.952 1.130 -6.432 2.080 -0.219 C9 A1I1F 7 A1I1F C10 C8 C 0 1 Y N N N N N -7.727 37.147 1.693 -5.068 2.214 -0.016 C10 A1I1F 8 A1I1F C12 C9 C 0 1 N N N N N N -7.394 39.498 1.880 -5.463 4.505 0.492 C12 A1I1F 9 A1I1F C13 C10 C 0 1 Y N N N N N -8.606 36.063 1.834 -4.231 1.109 -0.180 C13 A1I1F 10 A1I1F C17 C11 C 0 1 N N N N N N -10.184 35.306 4.863 0.255 -0.790 -0.173 C17 A1I1F 11 A1I1F C18 C12 C 0 1 N N N N N N -10.559 34.712 6.196 1.703 -0.434 0.044 C18 A1I1F 12 A1I1F C22 C13 C 0 1 Y N N N N N -9.081 35.554 9.457 4.396 -0.028 0.909 C22 A1I1F 13 A1I1F C23 C14 C 0 1 Y N N N N N -9.242 35.441 10.825 5.727 0.317 1.014 C23 A1I1F 14 A1I1F C24 C15 C 0 1 Y N N N N N -10.187 34.573 11.363 6.680 -0.338 0.236 C24 A1I1F 15 A1I1F C25 C16 C 0 1 Y N N N N N -10.416 34.521 12.824 8.113 0.032 0.348 C25 A1I1F 16 A1I1F C26 C17 C 0 1 Y N N N N N -11.359 33.831 13.499 8.645 0.985 1.164 C26 A1I1F 17 A1I1F C15 C18 C 0 1 N N N N N N -10.827 35.335 2.431 -2.082 0.094 -0.200 C15 A1I1F 18 A1I1F C16 C19 C 0 1 N N N N N N -10.729 34.509 3.690 -0.612 0.456 0.020 C16 A1I1F 19 A1I1F C21 C20 C 0 1 Y N N N N N -9.866 34.801 8.594 4.005 -1.032 0.031 C21 A1I1F 20 A1I1F C28 C21 C 0 1 Y N N N N N -10.238 34.955 15.013 10.320 0.100 0.052 C28 A1I1F 21 A1I1F C29 C22 C 0 1 N N N N N N -9.895 35.412 16.375 11.681 -0.167 -0.421 C29 A1I1F 22 A1I1F C32 C23 C 0 1 N N N N N N -8.434 36.747 17.654 14.037 0.223 -0.440 C32 A1I1F 23 A1I1F C33 C24 C 0 1 Y N N N N N -9.689 35.250 13.812 9.189 -0.541 -0.365 C33 A1I1F 24 A1I1F C34 C25 C 0 1 Y N N N N N -10.966 33.816 10.492 6.285 -1.340 -0.648 C34 A1I1F 25 A1I1F C35 C26 C 0 1 Y N N N N N -10.808 33.927 9.122 4.954 -1.689 -0.743 C35 A1I1F 26 A1I1F C36 C27 C 0 1 Y N N N N N -8.223 34.807 1.405 -4.741 -0.138 -0.503 C36 A1I1F 27 A1I1F C37 C28 C 0 1 Y N N N N N -6.969 34.594 0.835 -6.115 -0.340 -0.720 C37 A1I1F 28 A1I1F C39 C29 C 0 1 N N S N N N -6.136 32.907 -0.862 -7.338 -2.308 0.192 C39 A1I1F 29 A1I1F N20 N1 N 0 1 N N N N N N -9.747 35.080 7.212 2.655 -1.381 -0.075 N20 A1I1F 30 A1I1F N38 N2 N 0 1 N N N N N N -6.629 33.291 0.439 -6.696 -1.561 -0.926 N38 A1I1F 31 A1I1F N5 N3 N 0 1 N N N N N N -4.568 34.807 -0.985 -8.941 -0.466 -0.281 N5 A1I1F 32 A1I1F O11 O1 O 0 1 N N N N N N -8.207 38.353 2.116 -4.546 3.419 0.342 O11 A1I1F 33 A1I1F O14 O2 O 0 1 N N N N N N -9.806 36.344 2.436 -2.891 1.258 -0.020 O14 A1I1F 34 A1I1F O19 O3 O 0 1 N N N N N N -11.528 33.967 6.321 2.012 0.705 0.324 O19 A1I1F 35 A1I1F O27 O4 O 0 1 Y N N N N N -11.275 34.077 14.845 9.970 1.018 0.976 O27 A1I1F 36 A1I1F O30 O5 O 0 1 N N N N N N -10.487 35.078 17.372 11.876 -1.026 -1.259 O30 A1I1F 37 A1I1F O31 O6 O 0 1 N N N N N N -8.852 36.242 16.366 12.717 0.540 0.074 O31 A1I1F 38 A1I1F O40 O7 O 0 1 N N N N N N -7.117 32.250 -1.626 -6.362 -2.781 1.123 O40 A1I1F 39 A1I1F O7 O8 O 0 1 N N N N N N -3.794 36.220 0.578 -8.964 1.285 -1.707 O7 A1I1F 40 A1I1F H1 H1 H 0 1 N N N N N N -6.476 34.762 -1.875 -7.694 -0.482 1.493 H1 A1I1F 41 A1I1F H2B H2 H 0 1 N N N N N N -4.859 32.615 -3.092 -9.257 -3.022 1.378 H2B A1I1F 42 A1I1F H2A H3 H 0 1 N N N N N N -5.616 34.053 -3.857 -9.306 -1.768 2.656 H2A A1I1F 43 A1I1F H3B H4 H 0 1 N N N N N N -2.883 33.769 -3.572 -11.456 -2.176 1.008 H3B A1I1F 44 A1I1F H3A H5 H 0 1 N N N N N N -3.700 35.369 -3.580 -11.007 -0.519 1.534 H3A A1I1F 45 A1I1F H4B H6 H 0 1 N N N N N N -2.766 33.700 -1.210 -10.221 -1.960 -1.072 H4B A1I1F 46 A1I1F H4A H7 H 0 1 N N N N N N -2.610 35.468 -1.485 -10.950 -0.331 -0.890 H4A A1I1F 47 A1I1F H9 H8 H 0 1 N N N N N N -5.806 37.788 1.024 -7.097 2.923 -0.102 H9 A1I1F 48 A1I1F H12C H9 H 0 0 N N N N N N -7.900 40.394 2.269 -4.917 5.404 0.778 H12C A1I1F 49 A1I1F H12B H10 H 0 0 N N N N N N -6.427 39.372 2.389 -5.978 4.678 -0.453 H12B A1I1F 50 A1I1F H12A H11 H 0 0 N N N N N N -7.227 39.612 0.799 -6.192 4.261 1.264 H12A A1I1F 51 A1I1F H17B H12 H 0 0 N N N N N N -9.087 35.337 4.788 0.122 -1.172 -1.185 H17B A1I1F 52 A1I1F H17A H13 H 0 0 N N N N N N -10.584 36.329 4.809 -0.043 -1.554 0.546 H17A A1I1F 53 A1I1F H22 H14 H 0 1 N N N N N N -8.341 36.231 9.057 3.658 0.479 1.512 H22 A1I1F 54 A1I1F H23 H15 H 0 1 N N N N N N -8.626 36.034 11.485 6.031 1.094 1.699 H23 A1I1F 55 A1I1F H26 H16 H 0 1 N N N N N N -12.083 33.173 13.040 8.090 1.610 1.848 H26 A1I1F 56 A1I1F H15A H17 H 0 0 N N N N N N -11.816 35.815 2.384 -2.215 -0.287 -1.212 H15A A1I1F 57 A1I1F H15B H18 H 0 0 N N N N N N -10.694 34.684 1.555 -2.379 -0.670 0.519 H15B A1I1F 58 A1I1F H16A H19 H 0 0 N N N N N N -11.732 34.139 3.949 -0.479 0.838 1.032 H16A A1I1F 59 A1I1F H16B H20 H 0 0 N N N N N N -10.061 33.655 3.502 -0.314 1.220 -0.698 H16B A1I1F 60 A1I1F H32B H21 H 0 0 N N N N N N -7.571 37.417 17.523 14.057 0.388 -1.517 H32B A1I1F 61 A1I1F H32A H22 H 0 0 N N N N N N -9.263 37.303 18.116 14.778 0.863 0.040 H32A A1I1F 62 A1I1F H32C H23 H 0 0 N N N N N N -8.150 35.906 18.303 14.268 -0.822 -0.228 H32C A1I1F 63 A1I1F H33 H24 H 0 1 N N N N N N -8.856 35.914 13.634 9.129 -1.330 -1.100 H33 A1I1F 64 A1I1F H34 H25 H 0 1 N N N N N N -11.702 33.134 10.891 7.022 -1.848 -1.252 H34 A1I1F 65 A1I1F H35 H26 H 0 1 N N N N N N -11.420 33.332 8.460 4.648 -2.467 -1.427 H35 A1I1F 66 A1I1F H36 H27 H 0 1 N N N N N N -8.906 33.977 1.513 -4.081 -0.985 -0.621 H36 A1I1F 67 A1I1F H39 H28 H 0 1 N N N N N N -5.286 32.223 -0.718 -7.950 -3.128 -0.183 H39 A1I1F 68 A1I1F H20 H29 H 0 1 N N N N N N -8.951 35.626 6.950 2.403 -2.304 -0.233 H20 A1I1F 69 A1I1F H38 H30 H 0 1 N N N N N N -5.926 32.995 1.085 -6.689 -1.948 -1.816 H38 A1I1F 70 A1I1F H40 H31 H 0 1 N N N N N N -6.755 32.014 -2.472 -5.789 -3.477 0.772 H40 A1I1F 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I1F C1 C2 SING N N 1 A1I1F C2 C3 SING N N 2 A1I1F C3 C4 SING N N 3 A1I1F C4 N5 SING N N 4 A1I1F N5 C6 SING N N 5 A1I1F C6 O7 DOUB N N 6 A1I1F C6 C8 SING N N 7 A1I1F C8 C9 SING Y N 8 A1I1F C9 C10 DOUB Y N 9 A1I1F C10 O11 SING N N 10 A1I1F O11 C12 SING N N 11 A1I1F C10 C13 SING Y N 12 A1I1F C13 O14 SING N N 13 A1I1F O14 C15 SING N N 14 A1I1F C15 C16 SING N N 15 A1I1F C16 C17 SING N N 16 A1I1F C17 C18 SING N N 17 A1I1F C18 O19 DOUB N N 18 A1I1F C18 N20 SING N N 19 A1I1F N20 C21 SING N N 20 A1I1F C21 C22 DOUB Y N 21 A1I1F C22 C23 SING Y N 22 A1I1F C23 C24 DOUB Y N 23 A1I1F C24 C25 SING N N 24 A1I1F C25 C26 DOUB Y N 25 A1I1F C26 O27 SING Y N 26 A1I1F O27 C28 SING Y N 27 A1I1F C28 C29 SING N N 28 A1I1F C29 O30 DOUB N N 29 A1I1F C29 O31 SING N N 30 A1I1F O31 C32 SING N N 31 A1I1F C28 C33 DOUB Y N 32 A1I1F C24 C34 SING Y N 33 A1I1F C34 C35 DOUB Y N 34 A1I1F C13 C36 DOUB Y N 35 A1I1F C36 C37 SING Y N 36 A1I1F C37 N38 SING N N 37 A1I1F N38 C39 SING N N 38 A1I1F C39 O40 SING N N 39 A1I1F N5 C1 SING N N 40 A1I1F C33 C25 SING Y N 41 A1I1F C35 C21 SING Y N 42 A1I1F C37 C8 DOUB Y N 43 A1I1F C39 C1 SING N N 44 A1I1F C1 H1 SING N N 45 A1I1F C2 H2B SING N N 46 A1I1F C2 H2A SING N N 47 A1I1F C3 H3B SING N N 48 A1I1F C3 H3A SING N N 49 A1I1F C4 H4B SING N N 50 A1I1F C4 H4A SING N N 51 A1I1F C9 H9 SING N N 52 A1I1F C12 H12C SING N N 53 A1I1F C12 H12B SING N N 54 A1I1F C12 H12A SING N N 55 A1I1F C17 H17B SING N N 56 A1I1F C17 H17A SING N N 57 A1I1F C22 H22 SING N N 58 A1I1F C23 H23 SING N N 59 A1I1F C26 H26 SING N N 60 A1I1F C15 H15A SING N N 61 A1I1F C15 H15B SING N N 62 A1I1F C16 H16A SING N N 63 A1I1F C16 H16B SING N N 64 A1I1F C32 H32B SING N N 65 A1I1F C32 H32A SING N N 66 A1I1F C32 H32C SING N N 67 A1I1F C33 H33 SING N N 68 A1I1F C34 H34 SING N N 69 A1I1F C35 H35 SING N N 70 A1I1F C36 H36 SING N N 71 A1I1F C39 H39 SING N N 72 A1I1F N20 H20 SING N N 73 A1I1F N38 H38 SING N N 74 A1I1F O40 H40 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I1F InChI InChI 1.06 "InChI=1S/C29H31N3O8/c1-37-23-14-20-21(31-27(34)22-5-3-11-32(22)28(20)35)15-24(23)39-12-4-6-26(33)30-19-9-7-17(8-10-19)18-13-25(40-16-18)29(36)38-2/h7-10,13-16,22,27,31,34H,3-6,11-12H2,1-2H3,(H,30,33)/t22-,27-/m0/s1" A1I1F InChIKey InChI 1.06 KRZARIPDIMZWMV-CUNXSJBXSA-N A1I1F SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1occ(c1)c2ccc(NC(=O)CCCOc3cc4N[C@@H](O)[C@@H]5CCCN5C(=O)c4cc3OC)cc2" A1I1F SMILES CACTVS 3.385 "COC(=O)c1occ(c1)c2ccc(NC(=O)CCCOc3cc4N[CH](O)[CH]5CCCN5C(=O)c4cc3OC)cc2" A1I1F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OCCCC(=O)Nc3ccc(cc3)c4cc(oc4)C(=O)OC)N[C@H]([C@@H]5CCCN5C2=O)O" A1I1F SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2c(cc1OCCCC(=O)Nc3ccc(cc3)c4cc(oc4)C(=O)OC)NC(C5CCCN5C2=O)O" # _pdbx_chem_comp_identifier.comp_id A1I1F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 4-[4-[4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]furan-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I1F "Create component" 2025-02-07 PDBE A1I1F "Initial release" 2026-02-04 RCSB #