data_A1I1H # _chem_comp.id A1I1H _chem_comp.name "(phenylmethyl) (2S)-5-[(Z)-[[3-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propylamino]-(methylamino)methylidene]amino]-2-(phenylmethoxycarbonylamino)pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H43 N9 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-07 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 689.761 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I1H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I9U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I1H C10 C1 C 0 1 N N N N N N 46.096 26.503 128.180 6.901 -3.324 0.613 C10 A1I1H 1 A1I1H C11 C2 C 0 1 Y N N N N N 45.792 28.016 127.959 6.595 -4.700 1.147 C11 A1I1H 2 A1I1H C13 C3 C 0 1 Y N N N N N 44.089 29.782 127.588 5.934 -6.970 0.770 C13 A1I1H 3 A1I1H C14 C4 C 0 1 Y N N N N N 45.251 30.778 127.576 6.034 -7.224 2.125 C14 A1I1H 4 A1I1H C17 C5 C 0 1 N N N N N N 49.962 27.164 131.185 3.451 1.373 -0.895 C17 A1I1H 5 A1I1H C21 C6 C 0 1 N N N N N N 52.830 31.910 128.866 0.876 -1.452 -5.972 C21 A1I1H 6 A1I1H C27 C7 C 0 1 Y N N N N N 50.177 37.523 128.399 -7.152 1.055 -0.770 C27 A1I1H 7 A1I1H C28 C8 C 0 1 Y N N N N N 50.440 39.655 127.764 -8.893 1.776 0.303 C28 A1I1H 8 A1I1H C29 C9 C 0 1 Y N N N N N 50.610 40.892 127.217 -10.052 2.404 0.790 C29 A1I1H 9 A1I1H C30 C10 C 0 1 Y N N N N N 50.387 41.788 129.284 -9.960 1.051 2.658 C30 A1I1H 10 A1I1H C31 C11 C 0 1 Y N N N N N 50.227 39.605 129.144 -8.312 0.761 1.082 C31 A1I1H 11 A1I1H C32 C12 C 0 1 N N R N N N 48.883 36.873 130.846 -6.811 -2.117 0.391 C32 A1I1H 12 A1I1H N N1 N 0 1 N N N N N N 48.743 26.162 129.257 4.701 -0.469 0.119 N A1I1H 13 A1I1H C C13 C 0 1 N N N N N N 50.630 24.947 130.314 5.254 1.807 0.752 C A1I1H 14 A1I1H O O1 O 0 1 N N N N N N 51.799 24.747 130.231 5.456 1.347 1.850 O A1I1H 15 A1I1H C1 C14 C 0 1 N N N N N N 50.010 22.701 130.039 5.851 3.927 1.661 C1 A1I1H 16 A1I1H C12 C15 C 0 1 Y N N N N N 44.344 28.495 127.772 6.215 -5.708 0.281 C12 A1I1H 17 A1I1H C15 C16 C 0 1 Y N N N N N 46.507 30.359 127.744 6.419 -6.217 2.990 C15 A1I1H 18 A1I1H C16 C17 C 0 1 Y N N N N N 46.801 28.880 127.951 6.700 -4.955 2.501 C16 A1I1H 19 A1I1H C18 C18 C 0 1 N N N N N N 51.401 27.682 131.520 3.059 0.538 -2.115 C18 A1I1H 20 A1I1H C19 C19 C 0 1 N N N N N N 51.373 29.234 131.889 1.699 1.004 -2.638 C19 A1I1H 21 A1I1H C2 C20 C 0 1 Y N N N N N 48.636 22.107 129.694 5.988 5.364 1.228 C2 A1I1H 22 A1I1H C20 C21 C 0 1 N N N N N N 52.334 31.383 131.186 0.265 -0.554 -3.764 C20 A1I1H 23 A1I1H C22 C22 C 0 1 N N N N N N 52.770 33.032 132.971 -1.694 -1.444 -2.571 C22 A1I1H 24 A1I1H C23 C23 C 0 1 N N N N N N 51.570 34.007 133.081 -2.460 -1.181 -1.273 C23 A1I1H 25 A1I1H C24 C24 C 0 1 N N N N N N 51.515 34.858 131.776 -3.632 -2.158 -1.165 C24 A1I1H 26 A1I1H C25 C25 C 0 1 N N R N N N 50.838 36.161 132.089 -4.398 -1.895 0.133 C25 A1I1H 27 A1I1H C26 C26 C 0 1 N N R N N N 49.881 37.886 130.649 -6.279 -0.719 0.798 C26 A1I1H 28 A1I1H C3 C27 C 0 1 Y N N N N N 48.280 21.906 128.442 7.193 5.825 0.732 C3 A1I1H 29 A1I1H C33 C28 C 0 1 N N S N N N 49.343 36.017 131.997 -5.508 -2.949 0.309 C33 A1I1H 30 A1I1H C4 C29 C 0 1 Y N N N N N 46.902 21.317 128.116 7.318 7.144 0.335 C4 A1I1H 31 A1I1H C5 C30 C 0 1 Y N N N N N 46.071 21.007 129.086 6.238 8.001 0.435 C5 A1I1H 32 A1I1H C6 C31 C 0 1 Y N N N N N 46.481 21.241 130.553 5.033 7.540 0.930 C6 A1I1H 33 A1I1H C7 C32 C 0 1 Y N N N N N 47.686 21.753 130.837 4.906 6.220 1.322 C7 A1I1H 34 A1I1H C8 C33 C 0 1 N N S N N N 50.048 26.297 129.916 4.812 0.906 -0.373 C8 A1I1H 35 A1I1H C9 C34 C 0 1 N N N N N N 47.533 25.966 130.061 5.790 -1.263 0.153 C9 A1I1H 36 A1I1H N1 N2 N 0 1 N N N N N N 51.840 30.036 130.726 1.324 0.204 -3.806 N1 A1I1H 37 A1I1H N2 N3 N 0 1 N N N N N N 52.853 32.377 130.236 -0.015 -1.402 -4.810 N2 A1I1H 38 A1I1H N3 N4 N 0 1 N N N N N N 52.259 31.696 132.627 -0.571 -0.508 -2.674 N3 A1I1H 39 A1I1H N4 N5 N 0 1 Y N N N N N 50.104 38.349 129.319 -7.213 0.329 0.383 N4 A1I1H 40 A1I1H N5 N6 N 0 1 Y N N N N N 50.391 38.205 127.238 -8.138 1.903 -0.815 N5 A1I1H 41 A1I1H N6 N7 N 0 1 N N N N N N 50.820 40.995 125.790 -10.669 3.409 0.066 N6 A1I1H 42 A1I1H N7 N8 N 0 1 Y N N N N N 50.596 41.967 127.984 -10.542 2.010 1.961 N7 A1I1H 43 A1I1H N8 N9 N 0 1 Y N N N N N 50.192 40.640 129.971 -8.874 0.435 2.242 N8 A1I1H 44 A1I1H O1 O2 O 0 1 N N N N N N 49.790 23.900 130.750 5.424 3.120 0.532 O1 A1I1H 45 A1I1H O2 O3 O 0 1 N N N N N N 47.640 25.559 131.172 6.864 -0.837 -0.223 O2 A1I1H 46 A1I1H O3 O4 O 0 1 N N N N N N 46.227 26.233 129.576 5.688 -2.527 0.604 O3 A1I1H 47 A1I1H O4 O5 O 0 1 N N N N N N 51.193 37.189 131.142 -5.035 -0.609 0.072 O4 A1I1H 48 A1I1H O5 O6 O 0 1 N N N N N N 47.635 37.497 131.203 -7.687 -2.640 1.392 O5 A1I1H 49 A1I1H O6 O7 O 0 1 N N N N N N 48.787 36.520 133.208 -5.309 -3.688 1.515 O6 A1I1H 50 A1I1H H12 H1 H 0 1 N N N N N N 45.273 25.901 127.768 7.646 -2.845 1.249 H12 A1I1H 51 A1I1H H13 H2 H 0 1 N N N N N N 47.034 26.241 127.668 7.290 -3.406 -0.402 H13 A1I1H 52 A1I1H H15 H3 H 0 1 N N N N N N 43.074 30.124 127.448 5.637 -7.757 0.093 H15 A1I1H 53 A1I1H H16 H4 H 0 1 N N N N N N 45.053 31.830 127.430 5.815 -8.210 2.507 H16 A1I1H 54 A1I1H H19 H5 H 0 1 N N N N N N 49.290 28.017 131.009 3.511 2.424 -1.178 H19 A1I1H 55 A1I1H H20 H6 H 0 1 N N N N N N 49.578 26.562 132.022 2.701 1.249 -0.114 H20 A1I1H 56 A1I1H H26 H7 H 0 1 N N N N N N 53.228 32.693 128.204 0.923 -0.467 -6.436 H26 A1I1H 57 A1I1H H27 H8 H 0 1 N N N N N N 53.449 31.005 128.777 1.874 -1.750 -5.651 H27 A1I1H 58 A1I1H H28 H9 H 0 1 N N N N N N 51.795 31.676 128.576 0.493 -2.175 -6.692 H28 A1I1H 59 A1I1H H37 H10 H 0 1 N N N N N N 50.087 36.451 128.499 -6.394 0.945 -1.531 H37 A1I1H 60 A1I1H H40 H11 H 0 1 N N N N N N 50.371 42.690 129.878 -10.391 0.762 3.605 H40 A1I1H 61 A1I1H H2 H12 H 0 1 N N N N N N 48.767 36.255 129.943 -7.309 -2.078 -0.577 H2 A1I1H 62 A1I1H H11 H13 H 0 1 N N N N N N 48.680 26.204 128.260 3.843 -0.809 0.419 H11 A1I1H 63 A1I1H H4 H14 H 0 1 N N N N N N 50.578 21.995 130.662 6.813 3.564 2.024 H4 A1I1H 64 A1I1H H5 H15 H 0 1 N N N N N N 50.571 22.910 129.116 5.111 3.857 2.459 H5 A1I1H 65 A1I1H H14 H16 H 0 1 N N N N N N 43.533 27.782 127.791 6.137 -5.509 -0.778 H14 A1I1H 66 A1I1H H17 H17 H 0 1 N N N N N N 47.318 31.072 127.733 6.497 -6.415 4.049 H17 A1I1H 67 A1I1H H18 H18 H 0 1 N N N N N N 47.816 28.538 128.089 7.001 -4.168 3.177 H18 A1I1H 68 A1I1H H21 H19 H 0 1 N N N N N N 51.798 27.115 132.375 3.810 0.661 -2.896 H21 A1I1H 69 A1I1H H22 H20 H 0 1 N N N N N N 52.051 27.531 130.646 2.999 -0.513 -1.832 H22 A1I1H 70 A1I1H H23 H21 H 0 1 N N N N N N 52.035 29.417 132.748 0.948 0.881 -1.857 H23 A1I1H 71 A1I1H H24 H22 H 0 1 N N N N N N 50.346 29.530 132.148 1.759 2.055 -2.921 H24 A1I1H 72 A1I1H H31 H24 H 0 1 N N N N N N 53.302 32.989 133.933 -1.315 -2.466 -2.569 H31 A1I1H 73 A1I1H H30 H25 H 0 1 N N N N N N 53.459 33.379 132.186 -2.361 -1.305 -3.421 H30 A1I1H 74 A1I1H H32 H26 H 0 1 N N N N N N 51.704 34.667 133.951 -1.792 -1.319 -0.423 H32 A1I1H 75 A1I1H H33 H27 H 0 1 N N N N N N 50.636 33.437 133.194 -2.838 -0.159 -1.275 H33 A1I1H 76 A1I1H H35 H28 H 0 1 N N N N N N 50.945 34.319 131.005 -4.299 -2.020 -2.016 H35 A1I1H 77 A1I1H H34 H29 H 0 1 N N N N N N 52.536 35.047 131.413 -3.253 -3.180 -1.163 H34 A1I1H 78 A1I1H H1 H30 H 0 1 N N N N N N 51.109 36.476 133.108 -3.714 -1.933 0.981 H1 A1I1H 79 A1I1H H36 H31 H 0 1 N N N N N N 49.679 38.740 131.313 -6.101 -0.674 1.872 H36 A1I1H 80 A1I1H H6 H32 H 0 1 N N N N N N 48.961 22.157 127.642 8.036 5.155 0.654 H6 A1I1H 81 A1I1H H3 H33 H 0 1 N N N N N N 49.067 34.966 131.829 -5.537 -3.619 -0.550 H3 A1I1H 82 A1I1H H7 H34 H 0 1 N N N N N N 46.614 21.157 127.088 8.260 7.504 -0.052 H7 A1I1H 83 A1I1H H8 H35 H 0 1 N N N N N N 45.102 20.589 128.855 6.336 9.031 0.125 H8 A1I1H 84 A1I1H H9 H36 H 0 1 N N N N N N 45.798 20.992 131.351 4.189 8.210 1.008 H9 A1I1H 85 A1I1H H10 H37 H 0 1 N N N N N N 47.983 21.914 131.863 3.963 5.859 1.706 H10 A1I1H 86 A1I1H H H38 H 0 1 N N N N N N 50.749 26.781 129.221 5.543 0.946 -1.179 H A1I1H 87 A1I1H H46 H41 H 0 1 N N N N N N 53.187 33.280 130.507 -0.804 -1.966 -4.779 H46 A1I1H 88 A1I1H H47 H43 H 0 1 N N N N N N 51.895 31.059 133.306 -0.418 0.145 -1.973 H47 A1I1H 89 A1I1H H38 H45 H 0 1 N N N N N N 50.939 41.955 125.539 -10.302 3.688 -0.787 H38 A1I1H 90 A1I1H H39 H46 H 0 1 N N N N N N 51.638 40.480 125.536 -11.469 3.835 0.413 H39 A1I1H 91 A1I1H H41 H47 H 0 1 N N N N N N 46.972 36.829 131.334 -7.976 -3.548 1.227 H41 A1I1H 92 A1I1H H42 H48 H 0 1 N N N N N N 49.075 35.982 133.936 -6.011 -4.326 1.706 H42 A1I1H 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I1H N6 C29 SING N N 1 A1I1H C29 C28 DOUB Y N 2 A1I1H C29 N7 SING Y N 3 A1I1H N5 C28 SING Y N 4 A1I1H N5 C27 DOUB Y N 5 A1I1H C14 C13 DOUB Y N 6 A1I1H C14 C15 SING Y N 7 A1I1H C13 C12 SING Y N 8 A1I1H C15 C16 DOUB Y N 9 A1I1H C28 C31 SING Y N 10 A1I1H C12 C11 DOUB Y N 11 A1I1H C16 C11 SING Y N 12 A1I1H C11 C10 SING N N 13 A1I1H N7 C30 DOUB Y N 14 A1I1H C4 C3 DOUB Y N 15 A1I1H C4 C5 SING Y N 16 A1I1H C10 O3 SING N N 17 A1I1H C27 N4 SING Y N 18 A1I1H C3 C2 SING Y N 19 A1I1H C21 N2 SING N N 20 A1I1H C5 C6 DOUB Y N 21 A1I1H C31 N4 SING Y N 22 A1I1H C31 N8 DOUB Y N 23 A1I1H N C8 SING N N 24 A1I1H N C9 SING N N 25 A1I1H C30 N8 SING Y N 26 A1I1H N4 C26 SING N N 27 A1I1H O3 C9 SING N N 28 A1I1H C2 C1 SING N N 29 A1I1H C2 C7 DOUB Y N 30 A1I1H C8 C SING N N 31 A1I1H C8 C17 SING N N 32 A1I1H C1 O1 SING N N 33 A1I1H C9 O2 DOUB N N 34 A1I1H O C DOUB N N 35 A1I1H N2 C20 SING N N 36 A1I1H C O1 SING N N 37 A1I1H C6 C7 SING Y N 38 A1I1H C26 C32 SING N N 39 A1I1H C26 O4 SING N N 40 A1I1H N1 C20 DOUB N N 41 A1I1H N1 C19 SING N N 42 A1I1H C32 O5 SING N N 43 A1I1H C32 C33 SING N N 44 A1I1H O4 C25 SING N N 45 A1I1H C17 C18 SING N N 46 A1I1H C20 N3 SING N N 47 A1I1H C18 C19 SING N N 48 A1I1H C24 C25 SING N N 49 A1I1H C24 C23 SING N N 50 A1I1H C33 C25 SING N N 51 A1I1H C33 O6 SING N N 52 A1I1H N3 C22 SING N N 53 A1I1H C22 C23 SING N N 54 A1I1H C10 H12 SING N N 55 A1I1H C10 H13 SING N N 56 A1I1H C13 H15 SING N N 57 A1I1H C14 H16 SING N N 58 A1I1H C17 H19 SING N N 59 A1I1H C17 H20 SING N N 60 A1I1H C21 H26 SING N N 61 A1I1H C21 H27 SING N N 62 A1I1H C21 H28 SING N N 63 A1I1H C27 H37 SING N N 64 A1I1H C30 H40 SING N N 65 A1I1H C32 H2 SING N N 66 A1I1H N H11 SING N N 67 A1I1H C1 H4 SING N N 68 A1I1H C1 H5 SING N N 69 A1I1H C12 H14 SING N N 70 A1I1H C15 H17 SING N N 71 A1I1H C16 H18 SING N N 72 A1I1H C18 H21 SING N N 73 A1I1H C18 H22 SING N N 74 A1I1H C19 H23 SING N N 75 A1I1H C19 H24 SING N N 76 A1I1H C22 H31 SING N N 77 A1I1H C22 H30 SING N N 78 A1I1H C23 H32 SING N N 79 A1I1H C23 H33 SING N N 80 A1I1H C24 H35 SING N N 81 A1I1H C24 H34 SING N N 82 A1I1H C25 H1 SING N N 83 A1I1H C26 H36 SING N N 84 A1I1H C3 H6 SING N N 85 A1I1H C33 H3 SING N N 86 A1I1H C4 H7 SING N N 87 A1I1H C5 H8 SING N N 88 A1I1H C6 H9 SING N N 89 A1I1H C7 H10 SING N N 90 A1I1H C8 H SING N N 91 A1I1H N2 H46 SING N N 92 A1I1H N3 H47 SING N N 93 A1I1H N6 H38 SING N N 94 A1I1H N6 H39 SING N N 95 A1I1H O5 H41 SING N N 96 A1I1H O6 H42 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I1H InChI InChI 1.06 "InChI=1S/C34H43N9O7/c1-36-33(38-17-9-15-25-27(44)28(45)31(50-25)43-21-41-26-29(35)39-20-40-30(26)43)37-16-8-14-24(32(46)48-18-22-10-4-2-5-11-22)42-34(47)49-19-23-12-6-3-7-13-23/h2-7,10-13,20-21,24-25,27-28,31,44-45H,8-9,14-19H2,1H3,(H,42,47)(H2,35,39,40)(H2,36,37,38)/t24-,25+,27+,28+,31+/m0/s1" A1I1H InChIKey InChI 1.06 TWEZBUNLIURFOM-CYZHESPZSA-N A1I1H SMILES_CANONICAL CACTVS 3.385 "CNC(NCCC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)=NCCC[C@H](NC(=O)OCc4ccccc4)C(=O)OCc5ccccc5" A1I1H SMILES CACTVS 3.385 "CNC(NCCC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)=NCCC[CH](NC(=O)OCc4ccccc4)C(=O)OCc5ccccc5" A1I1H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN/C(=N/CCC[C@@H](C(=O)OCc1ccccc1)NC(=O)OCc2ccccc2)/NCCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1I1H SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=NCCCC(C(=O)OCc1ccccc1)NC(=O)OCc2ccccc2)NCCCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id A1I1H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) (2~{S})-5-[(~{Z})-[[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propylamino]-(methylamino)methylidene]amino]-2-(phenylmethoxycarbonylamino)pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I1H "Create component" 2025-02-07 PDBE A1I1H "Modify aromatic_flag" 2025-02-26 PDBE A1I1H "Initial release" 2026-02-18 RCSB #