data_A1I1I # _chem_comp.id A1I1I _chem_comp.name "4-[4-[4-[[(6~{a}~{S})-2-methoxy-11-oxidanylidene-6~{a},7,8,9-tetrahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]-~{N}-(1-benzothiophen-5-yl)-1-methyl-pyrrole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H35 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-07 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 661.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I1I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I9R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I1I N3 N1 N 0 1 N N N N N N 81.336 51.486 -28.219 -9.648 1.098 -0.655 N3 A1I1I 1 A1I1I C4 C1 C 0 1 Y N N N N N 80.268 51.157 -29.076 -8.979 0.125 0.018 C4 A1I1I 2 A1I1I C5 C2 C 0 1 Y N N N N N 79.866 52.166 -29.952 -7.592 0.281 0.149 C5 A1I1I 3 A1I1I C8 C3 C 0 1 N N N N N N 79.049 54.191 -31.672 -4.931 0.675 0.338 C8 A1I1I 4 A1I1I C10 C4 C 0 1 N N N N N N 77.300 55.400 -33.060 -2.812 1.928 -0.090 C10 A1I1I 5 A1I1I C15 C5 C 0 1 Y N N N N N 75.306 59.038 -34.082 1.538 4.061 0.008 C15 A1I1I 6 A1I1I C17 C6 C 0 1 Y N N N N N 74.742 58.709 -36.404 3.581 2.802 -0.030 C17 A1I1I 7 A1I1I C20 C7 C 0 1 Y N N N N N 74.210 60.806 -39.416 7.162 2.002 0.127 C20 A1I1I 8 A1I1I C21 C8 C 0 1 N N N N N N 73.969 62.060 -40.180 8.346 1.137 0.075 C21 A1I1I 9 A1I1I C1 C9 C 0 1 N N S N N N 80.506 50.150 -26.277 -11.121 -0.408 -1.873 C1 A1I1I 10 A1I1I C2 C10 C 0 1 N N N N N N 81.335 51.209 -26.961 -10.581 0.948 -1.506 C2 A1I1I 11 A1I1I C11 C11 C 0 1 N N N N N N 76.912 56.531 -32.137 -1.323 1.943 0.143 C11 A1I1I 12 A1I1I C14 C12 C 0 1 Y N N N N N 75.504 57.673 -33.915 0.821 2.899 -0.247 C14 A1I1I 13 A1I1I C18 C13 C 0 1 Y N N N N N 74.501 59.278 -37.748 5.060 2.750 0.084 C18 A1I1I 14 A1I1I C19 C14 C 0 1 Y N N N N N 74.159 60.657 -38.033 5.867 1.604 -0.049 C19 A1I1I 15 A1I1I C25 C15 C 0 1 Y N N N N N 72.361 65.155 -38.919 10.273 -0.824 0.822 C25 A1I1I 16 A1I1I C29 C16 C 0 1 Y N N N N N 72.472 68.069 -42.696 11.989 -4.719 -1.466 C29 A1I1I 17 A1I1I C30 C17 C 0 1 Y N N N N N 73.038 66.842 -42.720 10.879 -4.092 -1.803 C30 A1I1I 18 A1I1I C31 C18 C 0 1 Y N N N N N 72.902 66.131 -41.477 10.555 -2.938 -0.980 C31 A1I1I 19 A1I1I C32 C19 C 0 1 Y N N N N N 73.331 64.847 -41.118 9.454 -2.059 -1.071 C32 A1I1I 20 A1I1I C34 C20 C 0 1 N N N N N N 74.760 59.263 -41.377 8.348 4.180 0.614 C34 A1I1I 21 A1I1I C16 C21 C 0 1 Y N N N N N 74.929 59.546 -35.310 2.912 4.016 0.114 C16 A1I1I 22 A1I1I C24 C22 C 0 1 Y N N N N N 73.054 64.368 -39.836 9.319 -1.021 -0.175 C24 A1I1I 23 A1I1I C26 C23 C 0 1 Y N N N N N 71.933 66.423 -39.262 11.356 -1.664 0.916 C26 A1I1I 24 A1I1I C27 C24 C 0 1 Y N N N N N 72.202 66.908 -40.536 11.508 -2.726 0.019 C27 A1I1I 25 A1I1I C35 C25 C 0 1 Y N N N N N 74.730 58.686 -38.961 5.889 3.806 0.338 C35 A1I1I 26 A1I1I C36 C26 C 0 1 Y N N N N N 74.934 57.339 -36.231 2.860 1.638 -0.291 C36 A1I1I 27 A1I1I C37 C27 C 0 1 Y N N N N N 75.311 56.826 -35.002 1.486 1.688 -0.396 C37 A1I1I 28 A1I1I C38 C28 C 0 1 Y N N N N N 78.143 50.722 -30.842 -7.458 -1.755 1.423 C38 A1I1I 29 A1I1I C40 C29 C 0 1 N N N N N N 75.941 51.470 -31.415 -7.418 -3.770 2.686 C40 A1I1I 30 A1I1I C41 C30 C 0 1 Y N N N N N 78.540 49.720 -29.979 -8.820 -1.929 1.295 C41 A1I1I 31 A1I1I C42 C31 C 0 1 Y N N N N N 79.598 49.927 -29.096 -9.594 -0.999 0.585 C42 A1I1I 32 A1I1I C43 C32 C 0 1 N N N N N N 79.935 48.732 -28.261 -11.035 -1.265 0.466 C43 A1I1I 33 A1I1I C46 C33 C 0 1 N N N N N N 81.486 47.919 -26.526 -13.146 -1.232 -0.896 C46 A1I1I 34 A1I1I C47 C34 C 0 1 N N N N N N 81.392 48.194 -25.044 -13.295 -1.308 -2.436 C47 A1I1I 35 A1I1I C48 C35 C 0 1 N N N N N N 81.133 49.696 -24.950 -12.244 -0.251 -2.919 C48 A1I1I 36 A1I1I C6 C36 C 0 1 Y N N N N N 78.819 51.961 -30.832 -6.840 -0.647 0.842 C6 A1I1I 37 A1I1I C9 C37 C 0 1 N N N N N N 78.754 54.968 -32.935 -3.419 0.690 0.574 C9 A1I1I 38 A1I1I N13 N2 N 0 1 N N N N N N 75.953 57.369 -32.603 -0.574 2.947 -0.354 N13 A1I1I 39 A1I1I N23 N3 N 0 1 N N N N N N 73.422 63.059 -39.436 8.217 -0.161 -0.265 N23 A1I1I 40 A1I1I N33 N4 N 0 1 Y N N N N N 74.562 59.584 -39.965 7.161 3.358 0.367 N33 A1I1I 41 A1I1I N45 N5 N 0 1 N N N N N N 80.596 48.932 -27.106 -11.712 -1.002 -0.661 N45 A1I1I 42 A1I1I O12 O1 O 0 1 N N N N N N 77.471 56.688 -31.054 -0.799 1.052 0.776 O12 A1I1I 43 A1I1I O22 O2 O 0 1 N N N N N N 74.271 62.167 -41.370 9.444 1.591 0.338 O22 A1I1I 44 A1I1I O39 O3 O 0 1 N N N N N N 77.060 50.624 -31.669 -6.719 -2.662 2.116 O39 A1I1I 45 A1I1I O44 O4 O 0 1 N N N N N N 79.623 47.620 -28.641 -11.630 -1.738 1.415 O44 A1I1I 46 A1I1I O7 O5 O 0 1 N N N N N N 78.444 52.893 -31.763 -5.498 -0.481 0.958 O7 A1I1I 47 A1I1I S28 S1 S 0 1 Y N N N N N 71.741 68.451 -41.185 12.764 -3.954 -0.092 S28 A1I1I 48 A1I1I H5 H1 H 0 1 N N N N N N 80.378 53.117 -29.943 -7.106 1.135 -0.298 H5 A1I1I 49 A1I1I H8B H2 H 0 1 N N N N N N 78.637 54.729 -30.805 -5.375 1.572 0.768 H8B A1I1I 50 A1I1I H8A H3 H 0 1 N N N N N N 80.137 54.082 -31.553 -5.131 0.648 -0.733 H8A A1I1I 51 A1I1I H10A H4 H 0 0 N N N N N N 77.124 55.724 -34.096 -3.256 2.826 0.341 H10A A1I1I 52 A1I1I H10B H5 H 0 0 N N N N N N 76.661 54.534 -32.833 -3.012 1.901 -1.161 H10B A1I1I 53 A1I1I H15 H6 H 0 1 N N N N N N 75.448 59.707 -33.246 1.019 5.002 0.119 H15 A1I1I 54 A1I1I H1 H7 H 0 1 N N N N N N 79.466 50.478 -26.134 -10.325 -1.043 -2.261 H1 A1I1I 55 A1I1I H2 H8 H 0 1 N N N N N N 81.993 51.793 -26.334 -11.000 1.823 -1.981 H2 A1I1I 56 A1I1I H19 H9 H 0 1 N N N N N N 73.912 61.422 -37.311 5.526 0.599 -0.252 H19 A1I1I 57 A1I1I H25 H10 H 0 1 N N N N N N 72.156 64.770 -37.931 10.163 -0.006 1.519 H25 A1I1I 58 A1I1I H29 H11 H 0 1 N N N N N N 72.478 68.742 -43.540 12.373 -5.592 -1.973 H29 A1I1I 59 A1I1I H30 H12 H 0 1 N N N N N N 73.542 66.436 -43.585 10.259 -4.412 -2.626 H30 A1I1I 60 A1I1I H32 H13 H 0 1 N N N N N N 73.870 64.234 -41.825 8.708 -2.208 -1.837 H32 A1I1I 61 A1I1I H34B H14 H 0 0 N N N N N N 75.034 58.202 -41.478 8.748 4.534 -0.336 H34B A1I1I 62 A1I1I H34A H15 H 0 0 N N N N N N 73.829 59.455 -41.931 8.076 5.034 1.234 H34A A1I1I 63 A1I1I H34C H16 H 0 0 N N N N N N 75.566 59.890 -41.786 9.103 3.584 1.127 H34C A1I1I 64 A1I1I H16 H17 H 0 1 N N N N N N 74.777 60.609 -35.422 3.469 4.920 0.308 H16 A1I1I 65 A1I1I H26 H18 H 0 1 N N N N N N 71.396 67.030 -38.548 12.094 -1.503 1.687 H26 A1I1I 66 A1I1I H35 H19 H 0 1 N N N N N N 75.005 57.651 -39.100 5.577 4.828 0.493 H35 A1I1I 67 A1I1I H36 H20 H 0 1 N N N N N N 74.787 56.670 -37.066 3.377 0.698 -0.412 H36 A1I1I 68 A1I1I H37 H21 H 0 1 N N N N N N 75.456 55.762 -34.886 0.927 0.787 -0.599 H37 A1I1I 69 A1I1I H40B H22 H 0 0 N N N N N N 75.156 51.274 -32.160 -7.907 -4.337 1.894 H40B A1I1I 70 A1I1I H40C H23 H 0 0 N N N N N N 75.549 51.267 -30.408 -6.712 -4.415 3.210 H40C A1I1I 71 A1I1I H40A H24 H 0 0 N N N N N N 76.255 52.522 -31.481 -8.167 -3.406 3.388 H40A A1I1I 72 A1I1I H41 H25 H 0 1 N N N N N N 78.027 48.770 -29.988 -9.294 -2.789 1.745 H41 A1I1I 73 A1I1I H46B H26 H 0 0 N N N N N N 81.136 46.903 -26.763 -13.727 -0.399 -0.500 H46B A1I1I 74 A1I1I H46A H27 H 0 0 N N N N N N 82.517 48.045 -26.887 -13.467 -2.168 -0.438 H46A A1I1I 75 A1I1I H47B H28 H 0 0 N N N N N N 80.563 47.628 -24.595 -13.041 -2.302 -2.805 H47B A1I1I 76 A1I1I H47A H29 H 0 0 N N N N N N 82.333 47.929 -24.539 -14.300 -1.023 -2.746 H47A A1I1I 77 A1I1I H48B H30 H 0 0 N N N N N N 80.443 49.905 -24.119 -12.661 0.755 -2.878 H48B A1I1I 78 A1I1I H48A H31 H 0 0 N N N N N N 82.081 50.229 -24.782 -11.896 -0.484 -3.925 H48A A1I1I 79 A1I1I H9A H32 H 0 1 N N N N N N 79.386 55.868 -32.945 -3.219 0.717 1.645 H9A A1I1I 80 A1I1I H9B H33 H 0 1 N N N N N N 79.004 54.335 -33.799 -2.975 -0.207 0.143 H9B A1I1I 81 A1I1I H13 H34 H 0 1 N N N N N N 75.469 57.869 -31.885 -1.001 3.704 -0.785 H13 A1I1I 82 A1I1I H23 H35 H 0 1 N N N N N N 73.257 62.840 -38.474 7.361 -0.499 -0.573 H23 A1I1I 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I1I C1 C2 SING N N 1 A1I1I C2 N3 DOUB N N 2 A1I1I N3 C4 SING N N 3 A1I1I C4 C5 DOUB Y N 4 A1I1I C5 C6 SING Y N 5 A1I1I C6 O7 SING N N 6 A1I1I O7 C8 SING N N 7 A1I1I C8 C9 SING N N 8 A1I1I C9 C10 SING N N 9 A1I1I C10 C11 SING N N 10 A1I1I C11 O12 DOUB N N 11 A1I1I C11 N13 SING N N 12 A1I1I N13 C14 SING N N 13 A1I1I C14 C15 DOUB Y N 14 A1I1I C15 C16 SING Y N 15 A1I1I C16 C17 DOUB Y N 16 A1I1I C17 C18 SING N N 17 A1I1I C18 C19 SING Y N 18 A1I1I C19 C20 DOUB Y N 19 A1I1I C20 C21 SING N N 20 A1I1I C21 O22 DOUB N N 21 A1I1I C21 N23 SING N N 22 A1I1I N23 C24 SING N N 23 A1I1I C24 C25 DOUB Y N 24 A1I1I C25 C26 SING Y N 25 A1I1I C26 C27 DOUB Y N 26 A1I1I C27 S28 SING Y N 27 A1I1I S28 C29 SING Y N 28 A1I1I C29 C30 DOUB Y N 29 A1I1I C30 C31 SING Y N 30 A1I1I C31 C32 DOUB Y N 31 A1I1I C20 N33 SING Y N 32 A1I1I N33 C34 SING N N 33 A1I1I N33 C35 SING Y N 34 A1I1I C17 C36 SING Y N 35 A1I1I C36 C37 DOUB Y N 36 A1I1I C6 C38 DOUB Y N 37 A1I1I C38 O39 SING N N 38 A1I1I O39 C40 SING N N 39 A1I1I C38 C41 SING Y N 40 A1I1I C41 C42 DOUB Y N 41 A1I1I C42 C43 SING N N 42 A1I1I C43 O44 DOUB N N 43 A1I1I C43 N45 SING N N 44 A1I1I N45 C46 SING N N 45 A1I1I C46 C47 SING N N 46 A1I1I C47 C48 SING N N 47 A1I1I C31 C27 SING Y N 48 A1I1I C32 C24 SING Y N 49 A1I1I C35 C18 DOUB Y N 50 A1I1I C37 C14 SING Y N 51 A1I1I C42 C4 SING Y N 52 A1I1I N45 C1 SING N N 53 A1I1I C48 C1 SING N N 54 A1I1I C5 H5 SING N N 55 A1I1I C8 H8B SING N N 56 A1I1I C8 H8A SING N N 57 A1I1I C10 H10A SING N N 58 A1I1I C10 H10B SING N N 59 A1I1I C15 H15 SING N N 60 A1I1I C1 H1 SING N N 61 A1I1I C2 H2 SING N N 62 A1I1I C19 H19 SING N N 63 A1I1I C25 H25 SING N N 64 A1I1I C29 H29 SING N N 65 A1I1I C30 H30 SING N N 66 A1I1I C32 H32 SING N N 67 A1I1I C34 H34B SING N N 68 A1I1I C34 H34A SING N N 69 A1I1I C34 H34C SING N N 70 A1I1I C16 H16 SING N N 71 A1I1I C26 H26 SING N N 72 A1I1I C35 H35 SING N N 73 A1I1I C36 H36 SING N N 74 A1I1I C37 H37 SING N N 75 A1I1I C40 H40B SING N N 76 A1I1I C40 H40C SING N N 77 A1I1I C40 H40A SING N N 78 A1I1I C41 H41 SING N N 79 A1I1I C46 H46B SING N N 80 A1I1I C46 H46A SING N N 81 A1I1I C47 H47B SING N N 82 A1I1I C47 H47A SING N N 83 A1I1I C48 H48B SING N N 84 A1I1I C48 H48A SING N N 85 A1I1I C9 H9A SING N N 86 A1I1I C9 H9B SING N N 87 A1I1I N13 H13 SING N N 88 A1I1I N23 H23 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I1I InChI InChI 1.06 "InChI=1S/C37H35N5O5S/c1-41-22-25(18-31(41)36(44)40-27-11-12-34-24(17-27)13-16-48-34)23-7-9-26(10-8-23)39-35(43)6-4-15-47-33-20-30-29(19-32(33)46-2)37(45)42-14-3-5-28(42)21-38-30/h7-13,16-22,28H,3-6,14-15H2,1-2H3,(H,39,43)(H,40,44)" A1I1I InChIKey InChI 1.06 RHYKGQSILIHTTJ-UHFFFAOYSA-N A1I1I SMILES_CANONICAL CACTVS 3.385 "COc1cc2C(=O)N3CCC[C@H]3C=Nc2cc1OCCCC(=O)Nc4ccc(cc4)c5cn(C)c(c5)C(=O)Nc6ccc7sccc7c6" A1I1I SMILES CACTVS 3.385 "COc1cc2C(=O)N3CCC[CH]3C=Nc2cc1OCCCC(=O)Nc4ccc(cc4)c5cn(C)c(c5)C(=O)Nc6ccc7sccc7c6" A1I1I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cc1C(=O)Nc2ccc3c(c2)ccs3)c4ccc(cc4)NC(=O)CCCOc5cc6c(cc5OC)C(=O)N7CCC[C@H]7C=N6" A1I1I SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cc1C(=O)Nc2ccc3c(c2)ccs3)c4ccc(cc4)NC(=O)CCCOc5cc6c(cc5OC)C(=O)N7CCCC7C=N6" # _pdbx_chem_comp_identifier.comp_id A1I1I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[4-[[(6~{a}~{S})-2-methoxy-11-oxidanylidene-6~{a},7,8,9-tetrahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]-~{N}-(1-benzothiophen-5-yl)-1-methyl-pyrrole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I1I "Create component" 2025-02-07 PDBE A1I1I "Initial release" 2026-02-18 RCSB #