data_A1I1J # _chem_comp.id A1I1J _chem_comp.name "4-[4-[4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]-~{N}-(1-benzothiophen-5-yl)-1-methyl-pyrrole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H37 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-07 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 679.785 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I1J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I9R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I1J C13 C1 C 0 1 Y N N N N N 84.665 45.553 -24.988 6.525 -1.173 0.059 C13 A1I1J 1 A1I1J C15 C2 C 0 1 N N N N N N 82.646 44.903 -23.845 4.661 0.280 -0.192 C15 A1I1J 2 A1I1J C17 C3 C 0 1 N N N N N N 83.565 44.707 -21.525 2.587 1.661 -0.373 C17 A1I1J 3 A1I1J C21 C4 C 0 1 Y N N N N N 83.951 44.166 -17.811 -1.005 2.781 -0.287 C21 A1I1J 4 A1I1J C22 C5 C 0 1 Y N N N N N 83.117 43.182 -17.292 -1.683 3.962 -0.013 C22 A1I1J 5 A1I1J C24 C6 C 0 1 Y N N N N N 83.651 43.879 -15.045 -3.763 2.763 -0.022 C24 A1I1J 6 A1I1J C28 C7 C 0 1 N N N N N N 84.049 44.586 -9.995 -8.569 1.233 0.188 C28 A1I1J 7 A1I1J C18 C8 C 0 1 N N N N N N 83.326 43.987 -20.222 1.104 1.695 -0.107 C18 A1I1J 8 A1I1J C25 C9 C 0 1 Y N N N N N 83.449 43.767 -13.584 -5.241 2.754 0.121 C25 A1I1J 9 A1I1J C27 C10 C 0 1 Y N N N N N 83.629 44.099 -11.335 -7.362 2.065 0.209 C27 A1I1J 10 A1I1J C31 C11 C 0 1 Y N N N N N 85.754 46.084 -8.948 -9.619 -0.882 -0.118 C31 A1I1J 11 A1I1J C32 C12 C 0 1 Y N N N N N 85.566 45.675 -7.629 -10.732 -0.357 -0.773 C32 A1I1J 12 A1I1J C34 C13 C 0 1 Y N N N N N 86.871 47.524 -6.867 -11.913 -2.424 -0.427 C34 A1I1J 13 A1I1J C36 C14 C 0 1 Y N N N N N 88.205 49.594 -6.989 -12.239 -4.800 0.384 C36 A1I1J 14 A1I1J C38 C15 C 0 1 Y N N N N N 87.076 47.952 -8.190 -10.803 -2.961 0.231 C38 A1I1J 15 A1I1J C39 C16 C 0 1 Y N N N N N 86.510 47.220 -9.240 -9.647 -2.165 0.379 C39 A1I1J 16 A1I1J C41 C17 C 0 1 N N N N N N 81.893 42.374 -10.605 -8.476 4.279 0.702 C41 A1I1J 17 A1I1J C42 C18 C 0 1 Y N N N N N 82.587 42.933 -12.923 -6.034 3.834 0.383 C42 A1I1J 18 A1I1J C43 C19 C 0 1 Y N N N N N 84.488 44.857 -15.573 -3.081 1.580 -0.297 C43 A1I1J 19 A1I1J C44 C20 C 0 1 Y N N N N N 84.638 45.000 -16.939 -1.708 1.591 -0.428 C44 A1I1J 20 A1I1J C46 C21 C 0 1 Y N N N N N 85.977 44.028 -26.327 8.660 -0.372 -0.683 C46 A1I1J 21 A1I1J N40 N1 N 0 1 Y N N N N N 82.683 43.119 -11.584 -7.318 3.422 0.437 N40 A1I1J 22 A1I1J C1 C22 C 0 1 N N S N N N 86.619 43.191 -29.091 11.024 0.231 0.630 C1 A1I1J 23 A1I1J C10 C23 C 0 1 Y N N N N N 85.373 46.639 -25.522 7.095 -2.387 0.449 C10 A1I1J 24 A1I1J C12 C24 C 0 1 N N N N N N 85.659 49.001 -25.619 6.976 -4.564 1.401 C12 A1I1J 25 A1I1J C16 C25 C 0 1 N N N N N N 83.007 43.966 -22.722 3.155 0.314 0.078 C16 A1I1J 26 A1I1J C2 C26 C 0 1 N N N N N N 86.933 42.617 -30.479 12.325 0.886 1.163 C2 A1I1J 27 A1I1J C23 C27 C 0 1 Y N N N N N 82.969 43.043 -15.925 -3.056 3.956 0.120 C23 A1I1J 28 A1I1J C26 C28 C 0 1 Y N N N N N 84.131 44.532 -12.562 -6.082 1.631 0.005 C26 A1I1J 29 A1I1J C3 C29 C 0 1 N N N N N N 87.639 43.738 -31.212 13.458 -0.045 0.666 C3 A1I1J 30 A1I1J C33 C30 C 0 1 Y N N N N N 86.120 46.390 -6.585 -11.866 -1.119 -0.925 C33 A1I1J 31 A1I1J C37 C31 C 0 1 Y N N N N N 87.856 49.158 -8.218 -11.044 -4.325 0.675 C37 A1I1J 32 A1I1J C4 C32 C 0 1 N N N N N N 88.457 44.410 -30.136 12.874 -0.567 -0.676 C4 A1I1J 33 A1I1J C45 C33 C 0 1 Y N N N N N 84.973 44.269 -25.393 7.292 -0.166 -0.505 C45 A1I1J 34 A1I1J C48 C34 C 0 1 N N S N N N 86.679 42.178 -27.959 10.341 1.406 -0.222 C48 A1I1J 35 A1I1J C6 C35 C 0 1 N N N N N N 87.820 44.999 -27.832 10.623 -1.781 -0.751 C6 A1I1J 36 A1I1J C8 C36 C 0 1 Y N N N N N 86.687 45.123 -26.863 9.191 -1.601 -0.352 C8 A1I1J 37 A1I1J C9 C37 C 0 1 Y N N N N N 86.370 46.418 -26.451 8.448 -2.609 0.244 C9 A1I1J 38 A1I1J N20 N2 N 0 1 N N N N N N 84.035 44.483 -19.184 0.387 2.791 -0.427 N20 A1I1J 39 A1I1J N30 N3 N 0 1 N N N N N N 85.118 45.422 -10.026 -8.465 -0.102 0.029 N30 A1I1J 40 A1I1J N47 N4 N 0 1 N N N N N N 86.247 42.698 -26.683 9.476 0.622 -1.149 N47 A1I1J 41 A1I1J N5 N5 N 0 1 N N N N N N 87.630 44.244 -28.932 11.471 -0.789 -0.362 N5 A1I1J 42 A1I1J O11 O1 O 0 1 N N N N N N 84.996 47.869 -25.066 6.325 -3.348 1.028 O11 A1I1J 43 A1I1J O14 O2 O 0 1 N N N N N N 83.702 45.854 -24.058 5.192 -0.978 0.230 O14 A1I1J 44 A1I1J O19 O3 O 0 1 N N N N N N 82.555 43.036 -20.141 0.556 0.736 0.394 O19 A1I1J 45 A1I1J O29 O4 O 0 1 N N N N N N 83.458 44.256 -8.965 -9.665 1.747 0.316 O29 A1I1J 46 A1I1J O49 O5 O 0 1 N N N N N N 85.919 41.063 -28.356 9.558 2.259 0.615 O49 A1I1J 47 A1I1J O7 O6 O 0 1 N N N N N N 88.876 45.564 -27.611 11.005 -2.750 -1.380 O7 A1I1J 48 A1I1J S35 S1 S 0 1 Y N N N N N 87.622 48.588 -5.720 -13.207 -3.616 -0.473 S35 A1I1J 49 A1I1J H15B H1 H 0 0 N N N N N N 81.721 45.439 -23.587 4.842 0.411 -1.259 H15B A1I1J 50 A1I1J H15A H2 H 0 0 N N N N N N 82.489 44.322 -24.766 5.148 1.083 0.361 H15A A1I1J 51 A1I1J H17A H3 H 0 0 N N N N N N 84.649 44.830 -21.663 2.768 1.792 -1.440 H17A A1I1J 52 A1I1J H17B H4 H 0 0 N N N N N N 83.087 45.696 -21.471 3.074 2.465 0.179 H17B A1I1J 53 A1I1J H22 H5 H 0 1 N N N N N N 82.582 42.523 -17.960 -1.135 4.886 0.097 H22 A1I1J 54 A1I1J H32 H6 H 0 1 N N N N N N 84.982 44.791 -7.421 -10.704 0.650 -1.161 H32 A1I1J 55 A1I1J H36 H7 H 0 1 N N N N N N 88.791 50.485 -6.819 -12.578 -5.793 0.641 H36 A1I1J 56 A1I1J H39 H8 H 0 1 N N N N N N 86.657 47.531 -10.264 -8.781 -2.565 0.885 H39 A1I1J 57 A1I1J H41C H9 H 0 0 N N N N N N 81.232 41.667 -11.128 -8.692 4.278 1.770 H41C A1I1J 58 A1I1J H41B H10 H 0 0 N N N N N N 82.567 41.819 -9.936 -8.259 5.296 0.376 H41B A1I1J 59 A1I1J H41A H11 H 0 0 N N N N N N 81.286 43.075 -10.014 -9.341 3.900 0.157 H41A A1I1J 60 A1I1J H42 H12 H 0 1 N N N N N N 81.924 42.227 -13.401 -5.692 4.849 0.524 H42 A1I1J 61 A1I1J H43 H13 H 0 1 N N N N N N 85.028 45.513 -14.906 -3.627 0.654 -0.406 H43 A1I1J 62 A1I1J H44 H14 H 0 1 N N N N N N 85.293 45.764 -17.330 -1.179 0.674 -0.642 H44 A1I1J 63 A1I1J H1 H15 H 0 1 N N N N N N 85.616 43.642 -29.114 10.383 -0.163 1.418 H1 A1I1J 64 A1I1J H12A H16 H 0 0 N N N N N N 85.259 49.919 -25.164 7.409 -5.030 0.516 H12A A1I1J 65 A1I1J H12B H17 H 0 0 N N N N N N 86.737 48.930 -25.414 7.765 -4.347 2.121 H12B A1I1J 66 A1I1J H12C H18 H 0 0 N N N N N N 85.493 49.028 -26.706 6.250 -5.242 1.850 H12C A1I1J 67 A1I1J H16B H19 H 0 0 N N N N N N 82.105 43.418 -22.412 2.669 -0.489 -0.474 H16B A1I1J 68 A1I1J H16A H20 H 0 0 N N N N N N 83.763 43.253 -23.083 2.975 0.183 1.145 H16A A1I1J 69 A1I1J H2A H21 H 0 1 N N N N N N 87.587 41.737 -30.395 12.445 1.887 0.748 H2A A1I1J 70 A1I1J H2B H22 H 0 1 N N N N N N 86.006 42.337 -31.001 12.313 0.924 2.252 H2B A1I1J 71 A1I1J H23 H23 H 0 1 N N N N N N 82.316 42.276 -15.534 -3.582 4.874 0.333 H23 A1I1J 72 A1I1J H26 H24 H 0 1 N N N N N N 84.883 45.291 -12.719 -5.774 0.617 -0.204 H26 A1I1J 73 A1I1J H3A H25 H 0 1 N N N N N N 88.287 43.340 -32.006 14.378 0.515 0.498 H3A A1I1J 74 A1I1J H3B H26 H 0 1 N N N N N N 86.913 44.440 -31.648 13.624 -0.865 1.365 H3B A1I1J 75 A1I1J H33 H27 H 0 1 N N N N N N 85.971 46.072 -5.564 -12.725 -0.707 -1.433 H33 A1I1J 76 A1I1J H37 H28 H 0 1 N N N N N N 88.135 49.665 -9.130 -10.301 -4.904 1.202 H37 A1I1J 77 A1I1J H4B H29 H 0 1 N N N N N N 89.432 43.916 -30.016 12.980 0.184 -1.459 H4B A1I1J 78 A1I1J H4A H30 H 0 1 N N N N N N 88.611 45.475 -30.365 13.355 -1.500 -0.968 H4A A1I1J 79 A1I1J H45 H31 H 0 1 N N N N N N 84.425 43.436 -24.977 6.837 0.767 -0.802 H45 A1I1J 80 A1I1J H48 H32 H 0 1 N N N N N N 87.729 41.867 -27.861 11.088 1.978 -0.772 H48 A1I1J 81 A1I1J H9 H33 H 0 1 N N N N N N 86.911 47.257 -26.864 8.910 -3.538 0.544 H9 A1I1J 82 A1I1J H20 H34 H 0 1 N N N N N N 84.717 45.174 -19.423 0.836 3.586 -0.753 H20 A1I1J 83 A1I1J H30 H35 H 0 1 N N N N N N 85.508 45.593 -10.931 -7.591 -0.522 0.016 H30 A1I1J 84 A1I1J H47 H36 H 0 1 N N N N N N 86.955 42.405 -26.040 9.491 0.821 -2.098 H47 A1I1J 85 A1I1J H49 H37 H 0 1 N N N N N N 86.231 40.750 -29.197 9.125 2.984 0.143 H49 A1I1J 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I1J C1 C2 SING N N 1 A1I1J C2 C3 SING N N 2 A1I1J C3 C4 SING N N 3 A1I1J C4 N5 SING N N 4 A1I1J N5 C6 SING N N 5 A1I1J C6 O7 DOUB N N 6 A1I1J C6 C8 SING N N 7 A1I1J C8 C9 DOUB Y N 8 A1I1J C9 C10 SING Y N 9 A1I1J C10 O11 SING N N 10 A1I1J O11 C12 SING N N 11 A1I1J C10 C13 DOUB Y N 12 A1I1J C13 O14 SING N N 13 A1I1J O14 C15 SING N N 14 A1I1J C15 C16 SING N N 15 A1I1J C16 C17 SING N N 16 A1I1J C17 C18 SING N N 17 A1I1J C18 O19 DOUB N N 18 A1I1J C18 N20 SING N N 19 A1I1J N20 C21 SING N N 20 A1I1J C21 C22 DOUB Y N 21 A1I1J C22 C23 SING Y N 22 A1I1J C23 C24 DOUB Y N 23 A1I1J C24 C25 SING N N 24 A1I1J C25 C26 SING Y N 25 A1I1J C26 C27 DOUB Y N 26 A1I1J C27 C28 SING N N 27 A1I1J C28 O29 DOUB N N 28 A1I1J C28 N30 SING N N 29 A1I1J N30 C31 SING N N 30 A1I1J C31 C32 DOUB Y N 31 A1I1J C32 C33 SING Y N 32 A1I1J C33 C34 DOUB Y N 33 A1I1J C34 S35 SING Y N 34 A1I1J S35 C36 SING Y N 35 A1I1J C36 C37 DOUB Y N 36 A1I1J C37 C38 SING Y N 37 A1I1J C38 C39 DOUB Y N 38 A1I1J C27 N40 SING Y N 39 A1I1J N40 C41 SING N N 40 A1I1J N40 C42 SING Y N 41 A1I1J C24 C43 SING Y N 42 A1I1J C43 C44 DOUB Y N 43 A1I1J C13 C45 SING Y N 44 A1I1J C45 C46 DOUB Y N 45 A1I1J C46 N47 SING N N 46 A1I1J N47 C48 SING N N 47 A1I1J C48 O49 SING N N 48 A1I1J N5 C1 SING N N 49 A1I1J C38 C34 SING Y N 50 A1I1J C39 C31 SING Y N 51 A1I1J C42 C25 DOUB Y N 52 A1I1J C44 C21 SING Y N 53 A1I1J C46 C8 SING Y N 54 A1I1J C48 C1 SING N N 55 A1I1J C15 H15B SING N N 56 A1I1J C15 H15A SING N N 57 A1I1J C17 H17A SING N N 58 A1I1J C17 H17B SING N N 59 A1I1J C22 H22 SING N N 60 A1I1J C32 H32 SING N N 61 A1I1J C36 H36 SING N N 62 A1I1J C39 H39 SING N N 63 A1I1J C41 H41C SING N N 64 A1I1J C41 H41B SING N N 65 A1I1J C41 H41A SING N N 66 A1I1J C42 H42 SING N N 67 A1I1J C43 H43 SING N N 68 A1I1J C44 H44 SING N N 69 A1I1J C1 H1 SING N N 70 A1I1J C12 H12A SING N N 71 A1I1J C12 H12B SING N N 72 A1I1J C12 H12C SING N N 73 A1I1J C16 H16B SING N N 74 A1I1J C16 H16A SING N N 75 A1I1J C2 H2A SING N N 76 A1I1J C2 H2B SING N N 77 A1I1J C23 H23 SING N N 78 A1I1J C26 H26 SING N N 79 A1I1J C3 H3A SING N N 80 A1I1J C3 H3B SING N N 81 A1I1J C33 H33 SING N N 82 A1I1J C37 H37 SING N N 83 A1I1J C4 H4B SING N N 84 A1I1J C4 H4A SING N N 85 A1I1J C45 H45 SING N N 86 A1I1J C48 H48 SING N N 87 A1I1J C9 H9 SING N N 88 A1I1J N20 H20 SING N N 89 A1I1J N30 H30 SING N N 90 A1I1J N47 H47 SING N N 91 A1I1J O49 H49 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I1J InChI InChI 1.06 "InChI=1S/C37H37N5O6S/c1-41-21-24(18-30(41)36(45)39-26-11-12-33-23(17-26)13-16-49-33)22-7-9-25(10-8-22)38-34(43)6-4-15-48-32-20-28-27(19-31(32)47-2)37(46)42-14-3-5-29(42)35(44)40-28/h7-13,16-21,29,35,40,44H,3-6,14-15H2,1-2H3,(H,38,43)(H,39,45)" A1I1J InChIKey InChI 1.06 IYXKDRXBSVLURX-UHFFFAOYSA-N A1I1J SMILES_CANONICAL CACTVS 3.385 "COc1cc2C(=O)N3CCC[C@H]3[C@H](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)c5cn(C)c(c5)C(=O)Nc6ccc7sccc7c6" A1I1J SMILES CACTVS 3.385 "COc1cc2C(=O)N3CCC[CH]3[CH](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)c5cn(C)c(c5)C(=O)Nc6ccc7sccc7c6" A1I1J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cc1C(=O)Nc2ccc3c(c2)ccs3)c4ccc(cc4)NC(=O)CCCOc5cc6c(cc5OC)C(=O)N7CCC[C@H]7[C@@H](N6)O" A1I1J SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cc1C(=O)Nc2ccc3c(c2)ccs3)c4ccc(cc4)NC(=O)CCCOc5cc6c(cc5OC)C(=O)N7CCCC7C(N6)O" # _pdbx_chem_comp_identifier.comp_id A1I1J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]butanoylamino]phenyl]-~{N}-(1-benzothiophen-5-yl)-1-methyl-pyrrole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I1J "Create component" 2025-02-07 PDBE A1I1J "Initial release" 2026-02-18 RCSB #