data_A1I29 # _chem_comp.id A1I29 _chem_comp.name "5,6-dihydro-4~{H}-cyclopenta[b]thiophen-2-ylmethanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H11 N S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-18 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 153.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I29 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IDK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I29 N01 N1 N 0 1 N N N N N N -24.210 -57.903 -17.563 3.499 0.503 0.768 N01 A1I29 1 A1I29 C02 C1 C 0 1 N N N N N N -23.986 -58.436 -18.879 2.821 0.364 -0.528 C02 A1I29 2 A1I29 C03 C2 C 0 1 Y N N N N N -23.158 -57.489 -19.742 1.343 0.173 -0.304 C03 A1I29 3 A1I29 C04 C3 C 0 1 Y N N N N N -21.837 -57.787 -20.193 0.450 1.150 -0.230 C04 A1I29 4 A1I29 C05 C4 C 0 1 Y N N N N N -21.302 -56.635 -21.050 -0.875 0.746 -0.016 C05 A1I29 5 A1I29 C06 C5 C 0 1 Y N N N N N -22.276 -55.616 -21.138 -1.023 -0.581 0.080 C06 A1I29 6 A1I29 C07 C6 C 0 1 N N N N N N -21.727 -54.480 -21.990 -2.483 -0.943 0.309 C07 A1I29 7 A1I29 C08 C7 C 0 1 N N N N N N -20.223 -54.722 -22.071 -3.271 0.318 -0.100 C08 A1I29 8 A1I29 C09 C8 C 0 1 N N N N N N -20.063 -56.219 -21.841 -2.232 1.430 0.143 C09 A1I29 9 A1I29 S10 S1 S 0 1 Y N N N N N -23.607 -56.045 -20.316 0.541 -1.376 -0.108 S10 A1I29 10 A1I29 H1 H1 H 0 1 N N N N N N -24.754 -58.550 -17.029 3.309 -0.289 1.362 H1 A1I29 11 A1I29 H2 H2 H 0 1 N N N N N N -23.331 -57.754 -17.110 4.492 0.632 0.644 H2 A1I29 12 A1I29 H4 H4 H 0 1 N N N N N N -24.958 -58.602 -19.366 2.986 1.262 -1.123 H4 A1I29 13 A1I29 H5 H5 H 0 1 N N N N N N -23.452 -59.394 -18.789 3.223 -0.501 -1.057 H5 A1I29 14 A1I29 H6 H6 H 0 1 N N N N N N -21.294 -58.692 -19.964 0.725 2.190 -0.329 H6 A1I29 15 A1I29 H7 H7 H 0 1 N N N N N N -21.935 -53.509 -21.517 -2.767 -1.788 -0.318 H7 A1I29 16 A1I29 H8 H8 H 0 1 N N N N N N -22.175 -54.502 -22.995 -2.655 -1.176 1.360 H8 A1I29 17 A1I29 H9 H9 H 0 1 N N N N N N -19.836 -54.437 -23.061 -3.559 0.275 -1.150 H9 A1I29 18 A1I29 H10 H10 H 0 1 N N N N N N -19.695 -54.151 -21.293 -4.145 0.456 0.538 H10 A1I29 19 A1I29 H11 H11 H 0 1 N N N N N N -20.020 -56.755 -22.801 -2.337 1.834 1.150 H11 A1I29 20 A1I29 H12 H12 H 0 1 N N N N N N -19.149 -56.426 -21.264 -2.345 2.222 -0.598 H12 A1I29 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I29 C08 C07 SING N N 1 A1I29 C08 C09 SING N N 2 A1I29 C07 C06 SING N N 3 A1I29 C09 C05 SING N N 4 A1I29 C06 C05 DOUB Y N 5 A1I29 C06 S10 SING Y N 6 A1I29 C05 C04 SING Y N 7 A1I29 S10 C03 SING Y N 8 A1I29 C04 C03 DOUB Y N 9 A1I29 C03 C02 SING N N 10 A1I29 C02 N01 SING N N 11 A1I29 N01 H1 SING N N 12 A1I29 N01 H2 SING N N 13 A1I29 C02 H4 SING N N 14 A1I29 C02 H5 SING N N 15 A1I29 C04 H6 SING N N 16 A1I29 C07 H7 SING N N 17 A1I29 C07 H8 SING N N 18 A1I29 C08 H9 SING N N 19 A1I29 C08 H10 SING N N 20 A1I29 C09 H11 SING N N 21 A1I29 C09 H12 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I29 InChI InChI 1.06 "InChI=1S/C8H11NS/c9-5-7-4-6-2-1-3-8(6)10-7/h4H,1-3,5,9H2" A1I29 InChIKey InChI 1.06 JFWMSCGNMHKOHT-UHFFFAOYSA-N A1I29 SMILES_CANONICAL CACTVS 3.385 NCc1sc2CCCc2c1 A1I29 SMILES CACTVS 3.385 NCc1sc2CCCc2c1 A1I29 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(sc1CN)CCC2" A1I29 SMILES "OpenEye OEToolkits" 2.0.7 "c1c2c(sc1CN)CCC2" # _pdbx_chem_comp_identifier.comp_id A1I29 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5,6-dihydro-4~{H}-cyclopenta[b]thiophen-2-ylmethanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I29 "Create component" 2025-02-18 PDBE A1I29 "Initial release" 2026-01-21 RCSB #