data_A1I3F # _chem_comp.id A1I3F _chem_comp.name "(5-chloranylpyrimidin-2-yl)methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H6 Cl N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-18 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 143.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I3F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IEH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I3F C01 C1 C 0 1 Y N N N N N -3.905 -29.518 -14.494 -0.560 1.196 0.069 C01 A1I3F 1 A1I3F C02 C2 C 0 1 Y N N N N N -2.651 -29.983 -14.315 -1.262 0.001 0.013 C02 A1I3F 2 A1I3F C03 C3 C 0 1 Y N N N N N -2.267 -30.289 -13.048 -0.551 -1.186 0.112 C03 A1I3F 3 A1I3F N04 N1 N 0 1 Y N N N N N -3.103 -30.062 -12.053 0.764 -1.138 0.256 N04 A1I3F 4 A1I3F C05 C4 C 0 1 Y N N N N N -4.284 -29.569 -12.304 1.396 0.017 0.305 C05 A1I3F 5 A1I3F N06 N2 N 0 1 Y N N N N N -4.678 -29.330 -13.500 0.754 1.164 0.215 N06 A1I3F 6 A1I3F C07 C5 C 0 1 N N N N N N -5.265 -29.337 -11.198 2.894 0.026 0.470 C07 A1I3F 7 A1I3F N08 N3 N 0 1 N N N N N N -5.834 -30.546 -10.758 3.533 0.004 -0.852 N08 A1I3F 8 A1I3F CL09 CL1 CL 0 0 N N N N N N -1.620 -30.223 -15.725 -2.987 -0.010 -0.176 CL09 A1I3F 9 A1I3F H1 H1 H 0 1 N N N N N N -4.257 -29.303 -15.492 -1.080 2.140 -0.009 H1 A1I3F 10 A1I3F H2 H2 H 0 1 N N N N N N -1.292 -30.712 -12.858 -1.063 -2.136 0.073 H2 A1I3F 11 A1I3F H3 H3 H 0 1 N N N N N N -4.747 -28.857 -10.355 3.195 0.927 1.005 H3 A1I3F 12 A1I3F H4 H4 H 0 1 N N N N N N -6.065 -28.676 -11.562 3.203 -0.853 1.037 H4 A1I3F 13 A1I3F H5 H5 H 0 1 N N N N N N -6.484 -30.360 -10.021 4.538 0.010 -0.769 H5 A1I3F 14 A1I3F H6 H6 H 0 1 N N N N N N -6.310 -30.986 -11.519 3.219 -0.788 -1.393 H6 A1I3F 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I3F CL09 C02 SING N N 1 A1I3F C01 C02 DOUB Y N 2 A1I3F C01 N06 SING Y N 3 A1I3F C02 C03 SING Y N 4 A1I3F N06 C05 DOUB Y N 5 A1I3F C03 N04 DOUB Y N 6 A1I3F C05 N04 SING Y N 7 A1I3F C05 C07 SING N N 8 A1I3F C07 N08 SING N N 9 A1I3F C01 H1 SING N N 10 A1I3F C03 H2 SING N N 11 A1I3F C07 H3 SING N N 12 A1I3F C07 H4 SING N N 13 A1I3F N08 H5 SING N N 14 A1I3F N08 H6 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I3F InChI InChI 1.06 "InChI=1S/C5H6ClN3/c6-4-2-8-5(1-7)9-3-4/h2-3H,1,7H2" A1I3F InChIKey InChI 1.06 HLLBMNORHOVEHX-UHFFFAOYSA-N A1I3F SMILES_CANONICAL CACTVS 3.385 "NCc1ncc(Cl)cn1" A1I3F SMILES CACTVS 3.385 "NCc1ncc(Cl)cn1" A1I3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)CN)Cl" A1I3F SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)CN)Cl" # _pdbx_chem_comp_identifier.comp_id A1I3F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5-chloranylpyrimidin-2-yl)methanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I3F "Create component" 2025-02-18 PDBE A1I3F "Initial release" 2026-01-21 RCSB #