data_A1I46 # _chem_comp.id A1I46 _chem_comp.name "4-[[(6~{a}~{S})-2-methoxy-11-oxidanylidene-6~{a},7,8,9-tetrahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-03 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I46 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QBM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I46 C1 C1 C 0 1 N N S N N N 50.422 11.253 -0.690 -7.870 1.736 -0.796 C1 A1I46 1 A1I46 C10 C2 C 0 1 N N N N N N 46.503 13.053 6.911 0.840 0.809 0.229 C10 A1I46 2 A1I46 C11 C3 C 0 1 N N N N N N 46.869 13.022 8.375 2.285 0.404 0.101 C11 A1I46 3 A1I46 C14 C4 C 0 1 Y N N N N N 46.986 14.526 10.366 4.603 0.946 0.168 C14 A1I46 4 A1I46 C15 C5 C 0 1 Y N N N N N 47.053 15.860 10.749 5.003 -0.128 -0.616 C15 A1I46 5 A1I46 C16 C6 C 0 1 Y N N N N N 47.200 16.199 12.082 6.330 -0.507 -0.642 C16 A1I46 6 A1I46 C17 C7 C 0 1 Y N N N N N 47.283 15.213 13.061 7.265 0.185 0.116 C17 A1I46 7 A1I46 C19 C8 C 0 1 N N N N N N 47.264 16.958 14.785 9.132 -0.197 -1.284 C19 A1I46 8 A1I46 C2 C9 C 0 1 N N N N N N 51.122 11.272 0.647 -6.961 2.395 0.206 C2 A1I46 9 A1I46 C20 C10 C 0 1 N N N N N N 45.801 17.302 15.005 10.578 -0.698 -1.278 C20 A1I46 10 A1I46 C22 C11 C 0 1 N N N N N N 45.837 16.637 17.317 12.802 -0.239 -0.435 C22 A1I46 11 A1I46 C23 C12 C 0 1 N N N N N N 45.335 15.037 15.593 10.868 0.163 0.966 C23 A1I46 12 A1I46 C24 C13 C 0 1 N N N N N N 46.792 14.667 15.390 9.422 0.664 0.960 C24 A1I46 13 A1I46 C25 C14 C 0 1 Y N N N N N 47.217 13.879 12.672 6.865 1.260 0.900 C25 A1I46 14 A1I46 C26 C15 C 0 1 Y N N N N N 47.071 13.538 11.340 5.538 1.638 0.926 C26 A1I46 15 A1I46 C27 C16 C 0 1 Y N N N N N 47.119 14.012 2.014 -4.561 -2.064 0.067 C27 A1I46 16 A1I46 C29 C17 C 0 1 N N N N N N 45.607 15.695 1.257 -5.013 -4.379 -0.240 C29 A1I46 17 A1I46 C30 C18 C 0 1 Y N N N N N 47.946 14.171 0.917 -5.923 -1.867 0.151 C30 A1I46 18 A1I46 C31 C19 C 0 1 Y N N N N N 49.094 13.390 0.786 -6.445 -0.581 0.357 C31 A1I46 19 A1I46 C32 C20 C 0 1 N N N N N N 49.896 13.689 -0.442 -7.908 -0.443 0.414 C32 A1I46 20 A1I46 C35 C21 C 0 1 N N N N N N 50.933 12.824 -2.506 -9.993 0.846 -0.134 C35 A1I46 21 A1I46 C36 C22 C 0 1 N N N N N N 51.012 11.407 -3.033 -10.228 1.849 -1.326 C36 A1I46 22 A1I46 C37 C23 C 0 1 N N N N N N 51.237 10.573 -1.792 -8.957 2.735 -1.243 C37 A1I46 23 A1I46 C4 C24 C 0 1 Y N N N N N 49.415 12.441 1.765 -5.574 0.508 0.493 C4 A1I46 24 A1I46 C5 C25 C 0 1 Y N N N N N 48.576 12.286 2.869 -4.193 0.291 0.393 C5 A1I46 25 A1I46 C6 C26 C 0 1 Y N N N N N 47.438 13.060 2.999 -3.692 -0.978 0.184 C6 A1I46 26 A1I46 C8 C27 C 0 1 N N N N N N 46.531 11.721 4.773 -1.519 -0.016 0.221 C8 A1I46 27 A1I46 C9 C28 C 0 1 N N N N N N 47.175 11.940 6.119 -0.051 -0.428 0.091 C9 A1I46 28 A1I46 N13 N1 N 0 1 N N N N N N 46.780 14.220 8.998 3.257 1.334 0.190 N13 A1I46 29 A1I46 N18 N2 N 0 1 N N N N N N 47.411 15.552 14.401 8.610 -0.199 0.090 N18 A1I46 30 A1I46 N21 N3 N 0 1 N N N N N N 45.205 16.430 16.015 11.389 0.165 -0.408 N21 A1I46 31 A1I46 N3 N4 N 0 1 N N N N N N 50.546 11.602 1.745 -5.981 1.782 0.736 N3 A1I46 32 A1I46 N34 N5 N 0 1 N N N N N N 50.381 12.653 -1.153 -8.540 0.609 -0.125 N34 A1I46 33 A1I46 O12 O1 O 0 1 N N N N N N 47.229 11.984 8.924 2.575 -0.760 -0.083 O12 A1I46 34 A1I46 O28 O2 O 0 1 N N N N N N 45.973 14.723 2.232 -4.065 -3.315 -0.130 O28 A1I46 35 A1I46 O33 O3 O 0 1 N N N N N N 50.089 14.844 -0.775 -8.563 -1.308 0.965 O33 A1I46 36 A1I46 O7 O4 O 0 1 N N N N N N 46.554 12.954 4.040 -2.350 -1.171 0.092 O7 A1I46 37 A1I46 H1 H1 H 0 1 N N N N N N 49.416 10.815 -0.612 -7.300 1.384 -1.656 H1 A1I46 38 A1I46 H10A H2 H 0 0 N N N N N N 46.812 14.021 6.490 0.676 1.267 1.204 H10A A1I46 39 A1I46 H10B H3 H 0 0 N N N N N N 45.412 12.944 6.818 0.592 1.525 -0.555 H10B A1I46 40 A1I46 H15 H4 H 0 1 N N N N N N 46.990 16.637 10.001 4.276 -0.666 -1.206 H15 A1I46 41 A1I46 H16 H5 H 0 1 N N N N N N 47.251 17.240 12.366 6.641 -1.343 -1.252 H16 A1I46 42 A1I46 H19A H6 H 0 0 N N N N N N 47.822 17.139 15.716 9.100 0.817 -1.684 H19A A1I46 43 A1I46 H19B H7 H 0 0 N N N N N N 47.669 17.595 13.985 8.523 -0.853 -1.906 H19B A1I46 44 A1I46 H2 H8 H 0 1 N N N N N N 52.165 10.993 0.681 -7.146 3.422 0.483 H2 A1I46 45 A1I46 H20A H9 H 0 0 N N N N N N 45.723 18.347 15.340 10.607 -1.722 -0.904 H20A A1I46 46 A1I46 H20B H10 H 0 0 N N N N N N 45.256 17.180 14.057 10.977 -0.670 -2.292 H20B A1I46 47 A1I46 H22B H11 H 0 0 N N N N N N 45.373 15.972 18.060 13.181 -0.164 -1.454 H22B A1I46 48 A1I46 H22C H12 H 0 0 N N N N N N 46.911 16.412 17.243 13.379 0.416 0.217 H22C A1I46 49 A1I46 H22A H13 H 0 0 N N N N N N 45.702 17.684 17.628 12.892 -1.268 -0.089 H22A A1I46 50 A1I46 H23A H14 H 0 0 N N N N N N 44.902 14.385 16.366 11.477 0.819 1.587 H23A A1I46 51 A1I46 H23B H15 H 0 0 N N N N N N 44.792 14.895 14.647 10.900 -0.850 1.366 H23B A1I46 52 A1I46 H24A H16 H 0 0 N N N N N N 47.327 14.762 16.347 9.023 0.636 1.974 H24A A1I46 53 A1I46 H24B H17 H 0 0 N N N N N N 46.856 13.627 15.036 9.393 1.688 0.585 H24B A1I46 54 A1I46 H25 H18 H 0 1 N N N N N N 47.280 13.101 13.419 7.592 1.798 1.490 H25 A1I46 55 A1I46 H26 H19 H 0 1 N N N N N N 47.023 12.498 11.055 5.226 2.474 1.536 H26 A1I46 56 A1I46 H29A H20 H 0 0 N N N N N N 44.671 16.186 1.561 -5.601 -4.437 0.676 H29A A1I46 57 A1I46 H29B H21 H 0 0 N N N N N N 46.405 16.448 1.172 -5.674 -4.190 -1.085 H29B A1I46 58 A1I46 H29C H22 H 0 0 N N N N N N 45.463 15.202 0.284 -4.486 -5.320 -0.394 H29C A1I46 59 A1I46 H30 H23 H 0 1 N N N N N N 47.702 14.902 0.160 -6.592 -2.709 0.058 H30 A1I46 60 A1I46 H35B H24 H 0 0 N N N N N N 50.266 13.439 -3.128 -10.304 1.298 0.808 H35B A1I46 61 A1I46 H35A H25 H 0 0 N N N N N N 51.930 13.287 -2.469 -10.539 -0.082 -0.307 H35A A1I46 62 A1I46 H36B H26 H 0 0 N N N N N N 50.074 11.122 -3.532 -10.274 1.320 -2.278 H36B A1I46 63 A1I46 H36A H27 H 0 0 N N N N N N 51.850 11.297 -3.737 -11.128 2.441 -1.166 H36A A1I46 64 A1I46 H37B H28 H 0 0 N N N N N N 50.884 9.543 -1.951 -9.084 3.524 -0.501 H37B A1I46 65 A1I46 H37A H29 H 0 0 N N N N N N 52.305 10.558 -1.527 -8.716 3.157 -2.219 H37A A1I46 66 A1I46 H5 H30 H 0 1 N N N N N N 48.817 11.556 3.627 -3.513 1.126 0.481 H5 A1I46 67 A1I46 H8B H31 H 0 1 N N N N N N 45.490 11.393 4.911 -1.683 0.442 1.196 H8B A1I46 68 A1I46 H8A H32 H 0 1 N N N N N N 47.088 10.951 4.218 -1.766 0.700 -0.563 H8A A1I46 69 A1I46 H9B H33 H 0 1 N N N N N N 47.110 11.007 6.697 0.113 -0.886 -0.885 H9B A1I46 70 A1I46 H9A H34 H 0 1 N N N N N N 48.232 12.204 5.966 0.197 -1.143 0.875 H9A A1I46 71 A1I46 H13 H35 H 0 1 N N N N N N 46.536 14.994 8.414 3.023 2.272 0.270 H13 A1I46 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I46 C1 C2 SING N N 1 A1I46 C2 N3 DOUB N N 2 A1I46 N3 C4 SING N N 3 A1I46 C4 C5 DOUB Y N 4 A1I46 C5 C6 SING Y N 5 A1I46 C6 O7 SING N N 6 A1I46 O7 C8 SING N N 7 A1I46 C8 C9 SING N N 8 A1I46 C9 C10 SING N N 9 A1I46 C10 C11 SING N N 10 A1I46 C11 O12 DOUB N N 11 A1I46 C11 N13 SING N N 12 A1I46 N13 C14 SING N N 13 A1I46 C14 C15 DOUB Y N 14 A1I46 C15 C16 SING Y N 15 A1I46 C16 C17 DOUB Y N 16 A1I46 C17 N18 SING N N 17 A1I46 N18 C19 SING N N 18 A1I46 C19 C20 SING N N 19 A1I46 C20 N21 SING N N 20 A1I46 N21 C22 SING N N 21 A1I46 N21 C23 SING N N 22 A1I46 C23 C24 SING N N 23 A1I46 C17 C25 SING Y N 24 A1I46 C25 C26 DOUB Y N 25 A1I46 C6 C27 DOUB Y N 26 A1I46 C27 O28 SING N N 27 A1I46 O28 C29 SING N N 28 A1I46 C27 C30 SING Y N 29 A1I46 C30 C31 DOUB Y N 30 A1I46 C31 C32 SING N N 31 A1I46 C32 O33 DOUB N N 32 A1I46 C32 N34 SING N N 33 A1I46 N34 C35 SING N N 34 A1I46 C35 C36 SING N N 35 A1I46 C36 C37 SING N N 36 A1I46 C24 N18 SING N N 37 A1I46 C26 C14 SING Y N 38 A1I46 C31 C4 SING Y N 39 A1I46 N34 C1 SING N N 40 A1I46 C37 C1 SING N N 41 A1I46 C1 H1 SING N N 42 A1I46 C10 H10A SING N N 43 A1I46 C10 H10B SING N N 44 A1I46 C15 H15 SING N N 45 A1I46 C16 H16 SING N N 46 A1I46 C19 H19A SING N N 47 A1I46 C19 H19B SING N N 48 A1I46 C2 H2 SING N N 49 A1I46 C20 H20A SING N N 50 A1I46 C20 H20B SING N N 51 A1I46 C22 H22B SING N N 52 A1I46 C22 H22C SING N N 53 A1I46 C22 H22A SING N N 54 A1I46 C23 H23A SING N N 55 A1I46 C23 H23B SING N N 56 A1I46 C24 H24A SING N N 57 A1I46 C24 H24B SING N N 58 A1I46 C25 H25 SING N N 59 A1I46 C26 H26 SING N N 60 A1I46 C29 H29A SING N N 61 A1I46 C29 H29B SING N N 62 A1I46 C29 H29C SING N N 63 A1I46 C30 H30 SING N N 64 A1I46 C35 H35B SING N N 65 A1I46 C35 H35A SING N N 66 A1I46 C36 H36B SING N N 67 A1I46 C36 H36A SING N N 68 A1I46 C37 H37B SING N N 69 A1I46 C37 H37A SING N N 70 A1I46 C5 H5 SING N N 71 A1I46 C8 H8B SING N N 72 A1I46 C8 H8A SING N N 73 A1I46 C9 H9B SING N N 74 A1I46 C9 H9A SING N N 75 A1I46 N13 H13 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I46 InChI InChI 1.06 "InChI=1S/C28H35N5O4/c1-31-12-14-32(15-13-31)21-9-7-20(8-10-21)30-27(34)6-4-16-37-26-18-24-23(17-25(26)36-2)28(35)33-11-3-5-22(33)19-29-24/h7-10,17-19,22H,3-6,11-16H2,1-2H3,(H,30,34)" A1I46 InChIKey InChI 1.06 JXQXXIXJPNRKQK-UHFFFAOYSA-N A1I46 SMILES_CANONICAL CACTVS 3.385 "COc1cc2C(=O)N3CCC[C@H]3C=Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5" A1I46 SMILES CACTVS 3.385 "COc1cc2C(=O)N3CCC[CH]3C=Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5" A1I46 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCC[C@H]5C=N4" A1I46 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCCC5C=N4" # _pdbx_chem_comp_identifier.comp_id A1I46 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(6~{a}~{S})-2-methoxy-11-oxidanylidene-6~{a},7,8,9-tetrahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I46 "Create component" 2025-03-03 PDBE A1I46 "Initial release" 2026-03-11 RCSB #