data_A1I47 # _chem_comp.id A1I47 _chem_comp.name "4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H37 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-03 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QBM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I47 C22 C1 C 0 1 Y N N N N N 32.261 8.632 -8.747 -5.091 -0.077 0.443 C22 A1I47 1 A1I47 C21 C2 C 0 1 Y N N N N N 33.413 7.899 -8.490 -4.747 0.763 -0.608 C21 A1I47 2 A1I47 C16 C3 C 0 1 N N N N N N 36.737 9.717 -5.715 -0.102 -0.614 -0.334 C16 A1I47 3 A1I47 C15 C4 C 0 1 N N N N N N 37.465 9.838 -4.400 1.370 -0.217 -0.463 C15 A1I47 4 A1I47 C6 C5 C 0 1 N N N N N N 42.299 9.029 -0.255 7.695 -0.535 -0.634 C6 A1I47 5 A1I47 C8 C6 C 0 1 Y N N N N N 41.430 9.350 -1.429 6.241 -0.805 -0.394 C8 A1I47 6 A1I47 C9 C7 C 0 1 Y N N N N N 40.697 8.293 -1.970 5.765 -2.039 0.021 C9 A1I47 7 A1I47 C10 C8 C 0 1 Y N N N N N 39.863 8.493 -3.052 4.392 -2.207 0.123 C10 A1I47 8 A1I47 C12 C9 C 0 1 N N N N N N 39.222 6.194 -3.112 4.812 -4.437 0.839 C12 A1I47 9 A1I47 C1 C10 C 0 1 N N S N N N 42.029 11.229 0.922 7.395 1.307 0.997 C1 A1I47 10 A1I47 C13 C11 C 0 1 Y N N N N N 39.746 9.776 -3.616 3.539 -1.149 -0.193 C13 A1I47 11 A1I47 C17 C12 C 0 1 N N N N N N 35.291 9.289 -5.514 -0.987 0.582 -0.692 C17 A1I47 12 A1I47 C18 C13 C 0 1 N N N N N N 34.449 9.366 -6.763 -2.436 0.191 -0.565 C18 A1I47 13 A1I47 C2 C14 C 0 1 N N N N N N 42.862 11.719 2.106 8.409 2.208 1.747 C2 A1I47 14 A1I47 C23 C15 C 0 1 Y N N N N N 31.489 8.356 -9.861 -6.415 -0.400 0.664 C23 A1I47 15 A1I47 C24 C16 C 0 1 Y N N N N N 31.853 7.342 -10.742 -7.404 0.120 -0.162 C24 A1I47 16 A1I47 C26 C17 C 0 1 N N N N N N 29.966 7.976 -12.146 -9.150 0.137 1.432 C26 A1I47 17 A1I47 C27 C18 C 0 1 N N N N N N 29.029 7.358 -13.168 -10.596 -0.308 1.661 C27 A1I47 18 A1I47 C29 C19 C 0 1 N N N N N N 28.832 6.463 -15.392 -12.878 0.003 0.912 C29 A1I47 19 A1I47 C3 C20 C 0 1 N N N N N N 44.284 11.405 1.687 9.796 1.679 1.305 C3 A1I47 20 A1I47 C30 C21 C 0 1 N N N N N N 30.838 6.118 -14.109 -11.065 0.002 -0.693 C30 A1I47 21 A1I47 C31 C22 C 0 1 N N N N N N 31.796 6.721 -13.098 -9.618 0.447 -0.922 C31 A1I47 22 A1I47 C32 C23 C 0 1 Y N N N N N 33.007 6.610 -10.480 -7.060 0.964 -1.210 C32 A1I47 23 A1I47 C33 C24 C 0 1 Y N N N N N 33.780 6.885 -9.366 -5.735 1.278 -1.437 C33 A1I47 24 A1I47 C34 C25 C 0 1 Y N N N N N 40.471 10.825 -3.085 4.037 0.088 -0.572 C34 A1I47 25 A1I47 C35 C26 C 0 1 Y N N N N N 41.317 10.635 -1.994 5.417 0.273 -0.645 C35 A1I47 26 A1I47 C37 C27 C 0 1 N N S N N N 41.835 12.259 -0.181 6.486 2.360 0.189 C37 A1I47 27 A1I47 C4 C28 C 0 1 N N N N N N 44.188 10.101 0.906 9.508 1.200 -0.140 C4 A1I47 28 A1I47 N20 N1 N 0 1 N N N N N N 34.211 8.172 -7.353 -3.403 1.091 -0.832 N20 A1I47 29 A1I47 N25 N2 N 0 1 N N N N N N 31.087 7.076 -11.867 -8.745 -0.207 0.062 N25 A1I47 30 A1I47 N28 N3 N 0 1 N N N N N N 29.742 7.040 -14.403 -11.469 0.347 0.677 N28 A1I47 31 A1I47 N36 N4 N 0 1 N N N N N N 42.040 11.733 -1.508 5.959 1.500 -0.907 N36 A1I47 32 A1I47 N5 N5 N 0 1 N N N N N N 42.785 10.059 0.463 8.194 0.581 -0.033 N5 A1I47 33 A1I47 O11 O1 O 0 1 N N N N N N 39.141 7.506 -3.663 3.879 -3.400 0.531 O11 A1I47 34 A1I47 O14 O2 O 0 1 N N N N N N 38.873 9.938 -4.659 2.196 -1.334 -0.129 O14 A1I47 35 A1I47 O19 O3 O 0 1 N N N N N N 34.032 10.438 -7.191 -2.733 -0.934 -0.221 O19 A1I47 36 A1I47 O38 O4 O 0 1 N N N N N N 40.551 12.811 -0.024 5.426 2.858 1.008 O38 A1I47 37 A1I47 O7 O5 O 0 1 N N N N N N 42.550 7.871 0.024 8.385 -1.267 -1.318 O7 A1I47 38 A1I47 H22 H1 H 0 1 N N N N N N 31.966 9.422 -8.073 -4.322 -0.481 1.085 H22 A1I47 39 A1I47 H16B H2 H 0 0 N N N N N N 36.754 10.692 -6.224 -0.317 -1.440 -1.012 H16B A1I47 40 A1I47 H16A H3 H 0 0 N N N N N N 37.248 8.969 -6.339 -0.306 -0.923 0.691 H16A A1I47 41 A1I47 H15B H4 H 0 0 N N N N N N 37.265 8.949 -3.783 1.574 0.092 -1.488 H15B A1I47 42 A1I47 H15A H5 H 0 0 N N N N N N 37.122 10.738 -3.869 1.584 0.609 0.215 H15A A1I47 43 A1I47 H9 H6 H 0 1 N N N N N N 40.783 7.307 -1.537 6.443 -2.846 0.257 H9 A1I47 44 A1I47 H12A H7 H 0 0 N N N N N N 38.595 5.509 -3.701 5.468 -4.109 1.645 H12A A1I47 45 A1I47 H12B H8 H 0 0 N N N N N N 40.266 5.849 -3.138 4.273 -5.331 1.150 H12B A1I47 46 A1I47 H12C H9 H 0 0 N N N N N N 38.868 6.211 -2.071 5.409 -4.662 -0.045 H12C A1I47 47 A1I47 H1 H10 H 0 1 N N N N N N 41.042 10.911 1.290 6.822 0.656 1.657 H1 A1I47 48 A1I47 H17A H11 H 0 0 N N N N N N 35.285 8.249 -5.156 -0.772 1.408 -0.014 H17A A1I47 49 A1I47 H17B H12 H 0 0 N N N N N N 34.840 9.942 -4.752 -0.782 0.891 -1.717 H17B A1I47 50 A1I47 H2A H13 H 0 1 N N N N N N 42.727 12.799 2.262 8.286 3.249 1.449 H2A A1I47 51 A1I47 H2B H14 H 0 1 N N N N N N 42.594 11.179 3.026 8.287 2.103 2.825 H2B A1I47 52 A1I47 H23 H15 H 0 1 N N N N N N 30.595 8.933 -10.049 -6.682 -1.056 1.479 H23 A1I47 53 A1I47 H26B H16 H 0 0 N N N N N N 29.412 8.164 -11.214 -9.075 1.215 1.573 H26B A1I47 54 A1I47 H26A H17 H 0 0 N N N N N N 30.355 8.927 -12.540 -8.497 -0.369 2.143 H26A A1I47 55 A1I47 H27B H18 H 0 0 N N N N N N 28.600 6.435 -12.752 -10.666 -1.390 1.547 H27B A1I47 56 A1I47 H27A H19 H 0 0 N N N N N N 28.220 8.069 -13.392 -10.908 -0.027 2.667 H27A A1I47 57 A1I47 H29B H20 H 0 0 N N N N N N 29.389 6.232 -16.312 -13.170 0.330 1.910 H29B A1I47 58 A1I47 H29A H21 H 0 0 N N N N N N 28.390 5.540 -14.989 -13.502 0.501 0.169 H29A A1I47 59 A1I47 H29C H22 H 0 0 N N N N N N 28.032 7.184 -15.619 -13.007 -1.076 0.830 H29C A1I47 60 A1I47 H3B H23 H 0 1 N N N N N N 44.685 12.208 1.051 10.538 2.478 1.310 H3B A1I47 61 A1I47 H3A H24 H 0 1 N N N N N N 44.928 11.280 2.570 10.115 0.849 1.935 H3A A1I47 62 A1I47 H30B H25 H 0 0 N N N N N N 30.424 5.185 -13.700 -11.718 0.509 -1.404 H30B A1I47 63 A1I47 H30A H26 H 0 0 N N N N N N 31.385 5.901 -15.038 -11.140 -1.076 -0.835 H30A A1I47 64 A1I47 H31B H27 H 0 0 N N N N N N 32.583 5.989 -12.864 -9.306 0.167 -1.928 H31B A1I47 65 A1I47 H31A H28 H 0 0 N N N N N N 32.252 7.626 -13.527 -9.548 1.529 -0.808 H31A A1I47 66 A1I47 H32 H29 H 0 1 N N N N N N 33.302 5.819 -11.153 -7.829 1.368 -1.852 H32 A1I47 67 A1I47 H33 H30 H 0 1 N N N N N N 34.673 6.308 -9.176 -5.468 1.935 -2.252 H33 A1I47 68 A1I47 H34 H31 H 0 1 N N N N N N 40.381 11.808 -3.522 3.364 0.899 -0.809 H34 A1I47 69 A1I47 H37 H32 H 0 1 N N N N N N 42.577 13.053 -0.013 7.090 3.177 -0.207 H37 A1I47 70 A1I47 H4A H33 H 0 1 N N N N N N 44.871 10.110 0.044 9.477 2.046 -0.827 H4A A1I47 71 A1I47 H4B H34 H 0 1 N N N N N N 44.421 9.240 1.550 10.253 0.471 -0.460 H4B A1I47 72 A1I47 H20 H35 H 0 1 N N N N N N 34.656 7.381 -6.932 -3.169 1.965 -1.180 H20 A1I47 73 A1I47 H36 H37 H 0 1 N N N N N N 43.005 11.478 -1.561 6.001 1.816 -1.823 H36 A1I47 74 A1I47 H38 H38 H 0 1 N N N N N N 40.456 13.145 0.860 4.852 3.497 0.562 H38 A1I47 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I47 C1 C2 SING N N 1 A1I47 C2 C3 SING N N 2 A1I47 C3 C4 SING N N 3 A1I47 C4 N5 SING N N 4 A1I47 N5 C6 SING N N 5 A1I47 C6 O7 DOUB N N 6 A1I47 C6 C8 SING N N 7 A1I47 C8 C9 DOUB Y N 8 A1I47 C9 C10 SING Y N 9 A1I47 C10 O11 SING N N 10 A1I47 O11 C12 SING N N 11 A1I47 C10 C13 DOUB Y N 12 A1I47 C13 O14 SING N N 13 A1I47 O14 C15 SING N N 14 A1I47 C15 C16 SING N N 15 A1I47 C16 C17 SING N N 16 A1I47 C17 C18 SING N N 17 A1I47 C18 O19 DOUB N N 18 A1I47 C18 N20 SING N N 19 A1I47 N20 C21 SING N N 20 A1I47 C21 C22 DOUB Y N 21 A1I47 C22 C23 SING Y N 22 A1I47 C23 C24 DOUB Y N 23 A1I47 C24 N25 SING N N 24 A1I47 N25 C26 SING N N 25 A1I47 C26 C27 SING N N 26 A1I47 C27 N28 SING N N 27 A1I47 N28 C29 SING N N 28 A1I47 N28 C30 SING N N 29 A1I47 C30 C31 SING N N 30 A1I47 C24 C32 SING Y N 31 A1I47 C32 C33 DOUB Y N 32 A1I47 C13 C34 SING Y N 33 A1I47 C34 C35 DOUB Y N 34 A1I47 C35 N36 SING N N 35 A1I47 N36 C37 SING N N 36 A1I47 C37 O38 SING N N 37 A1I47 N5 C1 SING N N 38 A1I47 C31 N25 SING N N 39 A1I47 C33 C21 SING Y N 40 A1I47 C35 C8 SING Y N 41 A1I47 C37 C1 SING N N 42 A1I47 C22 H22 SING N N 43 A1I47 C16 H16B SING N N 44 A1I47 C16 H16A SING N N 45 A1I47 C15 H15B SING N N 46 A1I47 C15 H15A SING N N 47 A1I47 C9 H9 SING N N 48 A1I47 C12 H12A SING N N 49 A1I47 C12 H12B SING N N 50 A1I47 C12 H12C SING N N 51 A1I47 C1 H1 SING N N 52 A1I47 C17 H17A SING N N 53 A1I47 C17 H17B SING N N 54 A1I47 C2 H2A SING N N 55 A1I47 C2 H2B SING N N 56 A1I47 C23 H23 SING N N 57 A1I47 C26 H26B SING N N 58 A1I47 C26 H26A SING N N 59 A1I47 C27 H27B SING N N 60 A1I47 C27 H27A SING N N 61 A1I47 C29 H29B SING N N 62 A1I47 C29 H29A SING N N 63 A1I47 C29 H29C SING N N 64 A1I47 C3 H3B SING N N 65 A1I47 C3 H3A SING N N 66 A1I47 C30 H30B SING N N 67 A1I47 C30 H30A SING N N 68 A1I47 C31 H31B SING N N 69 A1I47 C31 H31A SING N N 70 A1I47 C32 H32 SING N N 71 A1I47 C33 H33 SING N N 72 A1I47 C34 H34 SING N N 73 A1I47 C37 H37 SING N N 74 A1I47 C4 H4A SING N N 75 A1I47 C4 H4B SING N N 76 A1I47 N20 H20 SING N N 77 A1I47 N36 H36 SING N N 78 A1I47 O38 H38 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I47 InChI InChI 1.06 "InChI=1S/C28H37N5O5/c1-31-12-14-32(15-13-31)20-9-7-19(8-10-20)29-26(34)6-4-16-38-25-18-22-21(17-24(25)37-2)28(36)33-11-3-5-23(33)27(35)30-22/h7-10,17-18,23,27,30,35H,3-6,11-16H2,1-2H3,(H,29,34)/t23-,27-/m0/s1" A1I47 InChIKey InChI 1.06 YIRFQMMIJFIHKS-HOFKKMOUSA-N A1I47 SMILES_CANONICAL CACTVS 3.385 "COc1cc2C(=O)N3CCC[C@H]3[C@H](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5" A1I47 SMILES CACTVS 3.385 "COc1cc2C(=O)N3CCC[CH]3[CH](O)Nc2cc1OCCCC(=O)Nc4ccc(cc4)N5CCN(C)CC5" A1I47 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCC[C@H]5[C@@H](N4)O" A1I47 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)NC(=O)CCCOc3cc4c(cc3OC)C(=O)N5CCCC5C(N4)O" # _pdbx_chem_comp_identifier.comp_id A1I47 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(6~{S},6~{a}~{S})-2-methoxy-6-oxidanyl-11-oxidanylidene-5,6,6~{a},7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I47 "Create component" 2025-03-03 PDBE A1I47 "Initial release" 2026-03-11 RCSB #