data_A1I4H
#
_chem_comp.id A1I4H
_chem_comp.name "9-[(3~{R},4~{R})-1-(3-azanylpropanoyl)-4-oxidanyl-pyrrolidin-3-yl]-1,3-dimethyl-purine-2,6-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2025-02-24
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 336.346
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1I4H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9Q8H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1I4H N11 N1 N 0 1 N N N N N N 85.340 -29.144 18.556 -2.481 1.091 -0.245 N11 A1I4H 1
A1I4H C12 C1 C 0 1 N N N N N N 86.081 -28.616 19.715 -1.676 2.313 -0.319 C12 A1I4H 2
A1I4H C13 C2 C 0 1 N N R N N N 86.176 -31.890 20.148 0.566 0.405 0.422 C13 A1I4H 3
A1I4H C14 C3 C 0 1 N N R N N N 85.483 -31.104 21.315 1.375 0.165 1.724 C14 A1I4H 4
A1I4H C16 C4 C 0 1 N N N N N N 84.799 -32.033 21.972 2.796 0.607 1.293 C16 A1I4H 5
A1I4H C18 C5 C 0 1 N N N N N N 85.863 -34.311 23.007 4.079 -0.097 -0.748 C18 A1I4H 6
A1I4H C20 C6 C 0 1 N N N N N N 85.044 -34.045 24.269 5.393 0.071 -0.029 C20 A1I4H 7
A1I4H C24 C7 C 0 1 N N N N N N 83.584 -27.536 15.581 -6.021 0.196 -0.733 C24 A1I4H 8
A1I4H C02 C8 C 0 1 N N N N N N 84.820 -28.164 17.604 -3.801 1.150 -0.496 C02 A1I4H 9
A1I4H C04 C9 C 0 1 N N N N N N 83.844 -29.951 16.173 -4.082 -1.150 -0.142 C04 A1I4H 10
A1I4H C06 C10 C 0 1 Y N N N N N 84.389 -30.960 17.167 -2.650 -1.256 0.144 C06 A1I4H 11
A1I4H C08 C11 C 0 1 Y N N N N N 84.919 -32.804 18.216 -0.613 -1.820 0.608 C08 A1I4H 12
A1I4H C10 C12 C 0 1 Y N N N N N 85.096 -30.594 18.297 -1.877 -0.103 0.076 C10 A1I4H 13
A1I4H C21 C13 C 0 1 N N N N N N 85.368 -34.943 25.500 6.541 -0.282 -0.976 C21 A1I4H 14
A1I4H C23 C14 C 0 1 N N N N N N 86.353 -33.320 20.707 1.576 0.038 -0.685 C23 A1I4H 15
A1I4H N03 N2 N 0 1 N N N N N N 84.088 -28.574 16.436 -4.589 0.063 -0.449 N03 A1I4H 16
A1I4H N07 N3 N 0 1 Y N N N N N 84.284 -32.303 17.114 -1.824 -2.277 0.476 N07 A1I4H 17
A1I4H N09 N4 N 0 1 Y N N N N N 85.413 -31.775 18.951 -0.604 -0.476 0.370 N09 A1I4H 18
A1I4H N17 N5 N 0 1 N N N N N N 85.746 -33.324 21.905 2.922 0.159 -0.106 N17 A1I4H 19
A1I4H N22 N6 N 0 1 N N N N N N 84.595 -34.451 26.660 7.822 -0.118 -0.274 N22 A1I4H 20
A1I4H O01 O1 O 0 1 N N N N N N 84.994 -27.018 17.785 -4.298 2.224 -0.775 O01 A1I4H 21
A1I4H O05 O2 O 0 1 N N N N N N 83.261 -30.329 15.248 -4.799 -2.133 -0.100 O05 A1I4H 22
A1I4H O15 O3 O 0 1 N N N N N N 86.500 -30.493 22.177 0.885 0.982 2.789 O15 A1I4H 23
A1I4H O19 O4 O 0 1 N N N N N N 86.557 -35.248 22.912 4.063 -0.462 -1.904 O19 A1I4H 24
A1I4H H121 H1 H 0 0 N N N N N N 86.113 -27.518 19.661 -0.861 2.168 -1.028 H121 A1I4H 25
A1I4H H123 H2 H 0 0 N N N N N N 85.577 -28.923 20.643 -2.302 3.141 -0.650 H123 A1I4H 26
A1I4H H122 H3 H 0 0 N N N N N N 87.107 -29.013 19.706 -1.265 2.538 0.665 H122 A1I4H 27
A1I4H H131 H4 H 0 0 N N N N N N 87.175 -31.456 19.995 0.265 1.449 0.339 H131 A1I4H 28
A1I4H H141 H5 H 0 0 N N N N N N 84.833 -30.328 20.885 1.362 -0.888 2.004 H141 A1I4H 29
A1I4H H162 H6 H 0 0 N N N N N N 84.626 -31.728 23.015 2.891 1.691 1.354 H162 A1I4H 30
A1I4H H161 H7 H 0 0 N N N N N N 83.834 -32.229 21.482 3.549 0.124 1.916 H161 A1I4H 31
A1I4H H202 H8 H 0 0 N N N N N N 85.211 -32.998 24.563 5.497 1.104 0.301 H202 A1I4H 32
A1I4H H201 H9 H 0 0 N N N N N N 83.983 -34.190 24.018 5.420 -0.591 0.837 H201 A1I4H 33
A1I4H H242 H10 H 0 0 N N N N N N 83.049 -27.987 14.732 -6.500 -0.779 -0.648 H242 A1I4H 34
A1I4H H243 H11 H 0 0 N N N N N N 82.895 -26.895 16.150 -6.470 0.886 -0.018 H243 A1I4H 35
A1I4H H241 H12 H 0 0 N N N N N N 84.422 -26.931 15.206 -6.156 0.581 -1.743 H241 A1I4H 36
A1I4H H081 H13 H 0 0 N N N N N N 85.013 -33.851 18.463 0.252 -2.412 0.869 H081 A1I4H 37
A1I4H H212 H14 H 0 0 N N N N N N 85.088 -35.984 25.283 6.437 -1.316 -1.305 H212 A1I4H 38
A1I4H H211 H15 H 0 0 N N N N N N 86.444 -34.892 25.723 6.514 0.380 -1.842 H211 A1I4H 39
A1I4H H231 H16 H 0 0 N N N N N N 87.421 -33.558 20.818 1.406 -0.987 -1.017 H231 A1I4H 40
A1I4H H232 H17 H 0 0 N N N N N N 85.882 -34.054 20.037 1.470 0.724 -1.525 H232 A1I4H 41
A1I4H H222 H18 H 0 0 N N N N N N 84.794 -35.019 27.459 8.597 -0.345 -0.879 H222 A1I4H 42
A1I4H H221 H19 H 0 0 N N N N N N 84.851 -33.504 26.853 7.914 0.815 0.097 H221 A1I4H 43
A1I4H H151 H21 H 0 0 N N N N N N 86.075 -30.018 22.882 1.360 0.867 3.624 H151 A1I4H 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1I4H C02 O01 DOUB N N 1
A1I4H N03 C02 SING N N 2
A1I4H O05 C04 DOUB N N 3
A1I4H C06 C04 SING N N 4
A1I4H N07 C06 SING Y N 5
A1I4H C08 N07 DOUB Y N 6
A1I4H N09 C08 SING Y N 7
A1I4H N11 C10 SING N N 8
A1I4H C12 N11 SING N N 9
A1I4H C10 N09 SING Y N 10
A1I4H C13 N09 SING N N 11
A1I4H C14 C13 SING N N 12
A1I4H O15 C14 SING N N 13
A1I4H C16 C14 SING N N 14
A1I4H N17 C16 SING N N 15
A1I4H O19 C18 DOUB N N 16
A1I4H C20 C18 SING N N 17
A1I4H C21 C20 SING N N 18
A1I4H N22 C21 SING N N 19
A1I4H C18 N17 SING N N 20
A1I4H C23 N17 SING N N 21
A1I4H C04 N03 SING N N 22
A1I4H C24 N03 SING N N 23
A1I4H C02 N11 SING N N 24
A1I4H C06 C10 DOUB Y N 25
A1I4H C13 C23 SING N N 26
A1I4H C12 H121 SING N N 27
A1I4H C12 H123 SING N N 28
A1I4H C12 H122 SING N N 29
A1I4H C13 H131 SING N N 30
A1I4H C14 H141 SING N N 31
A1I4H C16 H162 SING N N 32
A1I4H C16 H161 SING N N 33
A1I4H C20 H202 SING N N 34
A1I4H C20 H201 SING N N 35
A1I4H C24 H242 SING N N 36
A1I4H C24 H243 SING N N 37
A1I4H C24 H241 SING N N 38
A1I4H C08 H081 SING N N 39
A1I4H C21 H212 SING N N 40
A1I4H C21 H211 SING N N 41
A1I4H C23 H231 SING N N 42
A1I4H C23 H232 SING N N 43
A1I4H N22 H222 SING N N 44
A1I4H N22 H221 SING N N 45
A1I4H O15 H151 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1I4H InChI InChI 1.06 "InChI=1S/C14H20N6O4/c1-17-12-11(13(23)18(2)14(17)24)16-7-20(12)8-5-19(6-9(8)21)10(22)3-4-15/h7-9,21H,3-6,15H2,1-2H3/t8-,9-/m1/s1"
A1I4H InChIKey InChI 1.06 WROHBSJOOWPPFF-RKDXNWHRSA-N
A1I4H SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2n(cnc2C1=O)[C@@H]3CN(C[C@H]3O)C(=O)CCN"
A1I4H SMILES CACTVS 3.385 "CN1C(=O)N(C)c2n(cnc2C1=O)[CH]3CN(C[CH]3O)C(=O)CCN"
A1I4H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(ncn2[C@@H]3CN(C[C@H]3O)C(=O)CCN)C(=O)N(C1=O)C"
A1I4H SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(ncn2C3CN(CC3O)C(=O)CCN)C(=O)N(C1=O)C"
#
_pdbx_chem_comp_identifier.comp_id A1I4H
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "9-[(3~{R},4~{R})-1-(3-azanylpropanoyl)-4-oxidanyl-pyrrolidin-3-yl]-1,3-dimethyl-purine-2,6-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1I4H "Create component" 2025-02-24 PDBE
A1I4H "Initial release" 2025-04-02 RCSB
#