data_A1I64 # _chem_comp.id A1I64 _chem_comp.name "Aspartyl-lipoyllysine-amide dipeptide, reduced" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H34 N4 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-azanyl-4-[[1-azanyl-6-[[(6~{R})-6,8-bis(sulfanyl)octanoyl]amino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-20 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I64 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QJD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I64 C1 C1 C 0 1 N N R N N N 4.790 -2.460 -36.683 8.288 0.208 0.417 C1 A1I64 1 A1I64 CE CE C 0 1 N N N N N N 2.569 5.779 -38.901 -0.341 -0.842 -0.320 CE A1I64 2 A1I64 CD CD C 0 1 N N N N N N 1.416 6.378 -38.118 -1.434 -1.663 0.368 CD A1I64 3 A1I64 C2 C4 C 0 1 N N N N N N 4.979 -3.132 -35.329 9.360 1.118 -0.185 C2 A1I64 4 A1I64 C3 C5 C 0 1 N N N N N N 5.150 -4.640 -35.361 10.685 0.901 0.549 C3 A1I64 5 A1I64 C4 C6 C 0 1 N N N N N N 4.317 -1.023 -36.475 6.937 0.513 -0.232 C4 A1I64 6 A1I64 C5 C7 C 0 1 N N N N N N 3.894 -0.208 -37.697 5.844 -0.308 0.456 C5 A1I64 7 A1I64 C6 C8 C 0 1 N N N N N N 3.729 1.293 -37.473 4.492 -0.002 -0.193 C6 A1I64 8 A1I64 C7 C9 C 0 1 N N N N N N 3.410 2.063 -38.736 3.400 -0.823 0.494 C7 A1I64 9 A1I64 C8 C10 C 0 1 N N N N N N 3.578 3.556 -38.581 2.068 -0.523 -0.145 C8 A1I64 10 A1I64 NZ NZ N 0 1 N N N N N N 2.536 4.324 -38.919 0.953 -1.135 0.301 NZ A1I64 11 A1I64 O19 O1 O 0 1 N N N N N N 4.629 4.046 -38.168 2.000 0.270 -1.060 O19 A1I64 12 A1I64 S20 S1 S 0 1 N N N N N N 6.780 -5.208 -35.915 11.956 1.981 -0.165 S20 A1I64 13 A1I64 S21 S2 S 0 1 N N N N N N 6.219 -2.497 -37.800 8.727 -1.526 0.112 S21 A1I64 14 A1I64 H22 H1 H 0 1 N N N N N N 3.997 -3.001 -37.220 8.224 0.383 1.490 H22 A1I64 15 A1I64 HE2 H2 H 0 1 N N N N N N 3.514 6.104 -38.441 -0.303 -1.102 -1.378 HE2 A1I64 16 A1I64 HE3 H3 H 0 1 N N N N N N 2.520 6.146 -39.937 -0.563 0.219 -0.214 HE3 A1I64 17 A1I64 H1 H4 H 0 1 N N N N N N 1.452 7.467 -38.266 -1.211 -2.725 0.262 H1 A1I64 18 A1I64 HD3 H5 H 0 1 N N N N N N 0.486 5.980 -38.550 -1.472 -1.404 1.426 HD3 A1I64 19 A1I64 H21 H7 H 0 1 N N N N N N 5.875 -2.700 -34.859 9.487 0.881 -1.242 H21 A1I64 20 A1I64 H11 H8 H 0 1 N N N N N N 4.097 -2.905 -34.713 9.053 2.159 -0.081 H11 A1I64 21 A1I64 H31 H9 H 0 1 N N N N N N 4.980 -5.025 -34.345 10.558 1.139 1.605 H31 A1I64 22 A1I64 H3 H10 H 0 1 N N N N N N 4.393 -5.056 -36.042 10.992 -0.139 0.445 H3 A1I64 23 A1I64 H41 H11 H 0 1 N N N N N N 3.453 -1.061 -35.796 6.714 1.575 -0.126 H41 A1I64 24 A1I64 H4 H12 H 0 1 N N N N N N 5.140 -0.478 -35.991 6.975 0.253 -1.290 H4 A1I64 25 A1I64 H51 H13 H 0 1 N N N N N N 4.656 -0.351 -38.477 6.066 -1.370 0.350 H51 A1I64 26 A1I64 H5 H14 H 0 1 N N N N N N 2.930 -0.604 -38.049 5.806 -0.048 1.513 H5 A1I64 27 A1I64 H6 H15 H 0 1 N N N N N N 2.911 1.449 -36.754 4.270 1.059 -0.087 H6 A1I64 28 A1I64 H61 H16 H 0 1 N N N N N N 4.666 1.687 -37.053 4.530 -0.262 -1.251 H61 A1I64 29 A1I64 H7 H17 H 0 1 N N N N N N 4.081 1.717 -39.536 3.622 -1.885 0.389 H7 A1I64 30 A1I64 H71 H18 H 0 1 N N N N N N 2.367 1.856 -39.018 3.362 -0.564 1.552 H71 A1I64 31 A1I64 HZ1 H19 H 0 1 N N N N N N 1.688 3.874 -39.199 1.008 -1.769 1.033 HZ1 A1I64 32 A1I64 H9 H20 H 0 1 N N N N N N 6.653 -6.500 -35.848 13.047 1.688 0.565 H9 A1I64 33 A1I64 H8 H21 H 0 1 N N N N N N 5.765 -1.865 -38.841 8.771 -1.596 -1.230 H8 A1I64 34 A1I64 C9 CG C 0 1 N N N N N N ? ? ? -2.785 -1.358 -0.281 C9 A1I64 35 A1I64 C10 CB C 0 1 N N N N N N ? ? ? -3.878 -2.179 0.406 C10 A1I64 36 A1I64 C11 CA C 0 1 N N N N N N ? ? ? -5.230 -1.873 -0.242 C11 A1I64 37 A1I64 C12 C C 0 1 N N N N N Y ? ? ? -6.286 -2.770 0.351 C12 A1I64 38 A1I64 O1 O O 0 1 N N N N N Y ? ? ? -7.240 -2.288 0.922 O1 A1I64 39 A1I64 N2 N2 N 0 1 N N N N Y Y ? ? ? -6.169 -4.109 0.246 N2 A1I64 40 A1I64 N1 N1 N 0 1 N N N N Y Y ? ? ? -5.584 -0.473 0.003 N1 A1I64 41 A1I64 C C15 C 0 1 N N N N Y Y ? ? ? -6.418 0.168 -0.839 C A1I64 42 A1I64 O O4 O 0 1 N N N N Y Y ? ? ? -6.876 -0.413 -1.800 O A1I64 43 A1I64 CA "CA'" C 0 1 N N N N Y N ? ? ? -6.783 1.609 -0.586 CA A1I64 44 A1I64 N N3 N 0 1 N N N Y Y N ? ? ? -7.280 2.213 -1.829 N A1I64 45 A1I64 CB C17 C 0 1 N N N N N N ? ? ? -7.872 1.678 0.486 CB A1I64 46 A1I64 CG C18 C 0 1 N N N N N N ? ? ? -8.150 3.120 0.827 CG A1I64 47 A1I64 OD2 O5 O 0 1 N N N N N N ? ? ? -9.076 3.425 1.749 OD2 A1I64 48 A1I64 OD1 O6 O 0 1 N N N N N N ? ? ? -7.539 4.001 0.270 OD1 A1I64 49 A1I64 HG2 H21 H 0 1 N N N N N N ? ? ? -3.007 -0.296 -0.175 HG2 A1I64 50 A1I64 HG3 H22 H 0 1 N N N N N N ? ? ? -2.747 -1.617 -1.339 HG3 A1I64 51 A1I64 H10 H23 H 0 1 N N N N N N ? ? ? -3.656 -3.241 0.301 H10 A1I64 52 A1I64 H12 H24 H 0 1 N N N N N N ? ? ? -3.916 -1.919 1.464 H12 A1I64 53 A1I64 H13 H25 H 0 1 N N N N Y N ? ? ? -5.165 -2.049 -1.316 H13 A1I64 54 A1I64 H14 H26 H 0 1 N N N N Y Y ? ? ? -5.406 -4.495 -0.211 H14 A1I64 55 A1I64 HA H29 H 0 1 N N N N Y N ? ? ? -5.902 2.152 -0.244 HA A1I64 56 A1I64 HXT H30 H 0 1 N N N N Y Y ? ? ? -6.557 2.238 -2.533 HXT A1I64 57 A1I64 H2 H31 H 0 1 N N N Y N N ? ? ? -8.097 1.727 -2.167 H2 A1I64 58 A1I64 HB2 H32 H 0 1 N N N N N N ? ? ? -8.783 1.212 0.109 HB2 A1I64 59 A1I64 HB3 H33 H 0 1 N N N N N N ? ? ? -7.537 1.151 1.379 HB3 A1I64 60 A1I64 HD2 H34 H 0 1 N N N N N N ? ? ? -9.219 4.363 1.934 HD2 A1I64 61 A1I64 H16 H33 H 0 1 N N N Y N N ? ? ? -5.218 -0.008 0.772 H16 A1I64 62 A1I64 H15 H34 H 0 1 N N N N N N ? ? ? -6.849 -4.686 0.627 H15 A1I64 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I64 C1 S21 SING N N 1 A1I64 C1 C2 SING N N 2 A1I64 C2 C3 SING N N 3 A1I64 C3 S20 SING N N 4 A1I64 C1 C4 SING N N 5 A1I64 C4 C5 SING N N 6 A1I64 C5 C6 SING N N 7 A1I64 C6 C7 SING N N 8 A1I64 C7 C8 SING N N 9 A1I64 C8 NZ SING N N 10 A1I64 NZ CE SING N N 11 A1I64 CE CD SING N N 12 A1I64 C8 O19 DOUB N N 13 A1I64 C1 H22 SING N N 14 A1I64 CE HE2 SING N N 15 A1I64 CE HE3 SING N N 16 A1I64 CD H1 SING N N 17 A1I64 CD HD3 SING N N 18 A1I64 C2 H21 SING N N 19 A1I64 C2 H11 SING N N 20 A1I64 C3 H31 SING N N 21 A1I64 C3 H3 SING N N 22 A1I64 C4 H41 SING N N 23 A1I64 C4 H4 SING N N 24 A1I64 C5 H51 SING N N 25 A1I64 C5 H5 SING N N 26 A1I64 C6 H6 SING N N 27 A1I64 C6 H61 SING N N 28 A1I64 C7 H7 SING N N 29 A1I64 C7 H71 SING N N 30 A1I64 NZ HZ1 SING N N 31 A1I64 S20 H9 SING N N 32 A1I64 S21 H8 SING N N 33 A1I64 CD C9 SING N N 34 A1I64 C9 C10 SING N N 35 A1I64 C10 C11 SING N N 36 A1I64 C11 C12 SING N N 37 A1I64 C12 O1 DOUB N N 38 A1I64 C12 N2 SING N N 39 A1I64 C11 N1 SING N N 40 A1I64 N1 C SING N N 41 A1I64 C O DOUB N N 42 A1I64 C CA SING N N 43 A1I64 CA N SING N N 44 A1I64 CA CB SING N N 45 A1I64 CB CG SING N N 46 A1I64 CG OD2 SING N N 47 A1I64 CG OD1 DOUB N N 48 A1I64 C9 HG2 SING N N 49 A1I64 C9 HG3 SING N N 50 A1I64 C10 H10 SING N N 51 A1I64 C10 H12 SING N N 52 A1I64 C11 H13 SING N N 53 A1I64 N2 H14 SING N N 54 A1I64 CA HA SING N N 55 A1I64 N HXT SING N N 56 A1I64 N H2 SING N N 57 A1I64 CB HB2 SING N N 58 A1I64 CB HB3 SING N N 59 A1I64 OD2 HD2 SING N N 60 A1I64 N1 H16 SING N N 61 A1I64 N2 H15 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I64 InChI InChI 1.06 "InChI=1S/C18H34N4O5S2/c19-13(11-16(24)25)18(27)22-14(17(20)26)6-3-4-9-21-15(23)7-2-1-5-12(29)8-10-28/h12-14,28-29H,1-11,19H2,(H2,20,26)(H,21,23)(H,22,27)(H,24,25)/t12-,13?,14?/m1/s1" A1I64 InChIKey InChI 1.06 SHIRUYFMGIGUGW-IYXRBSQSSA-N A1I64 SMILES_CANONICAL CACTVS 3.385 "NC(CC(O)=O)C(=O)NC(CCCCNC(=O)CCCC[C@@H](S)CCS)C(N)=O" A1I64 SMILES CACTVS 3.385 "NC(CC(O)=O)C(=O)NC(CCCCNC(=O)CCCC[CH](S)CCS)C(N)=O" A1I64 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)NCCCCC(C(=O)N)NC(=O)C(CC(=O)O)N)C[C@H](CCS)S" A1I64 SMILES "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)NCCCCC(C(=O)N)NC(=O)C(CC(=O)O)N)CC(CCS)S" # _pdbx_chem_comp_identifier.comp_id A1I64 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-azanyl-4-[[1-azanyl-6-[[(6~{R})-6,8-bis(sulfanyl)octanoyl]amino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1I64 _pdbx_chem_comp_synonyms.name "3-azanyl-4-[[1-azanyl-6-[[(6~{R})-6,8-bis(sulfanyl)octanoyl]amino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I64 "Create component" 2025-03-20 PDBE A1I64 "Modify name" 2025-03-20 PDBE A1I64 "Modify parent residue" 2025-03-20 PDBE A1I64 "Other modification" 2025-03-20 PDBE A1I64 "Initial release" 2026-09-30 RCSB #