data_A1I65 # _chem_comp.id A1I65 _chem_comp.name "Aspartyl-R-Lipoyllysine-amide dipeptide, oxidized" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H32 N4 O5 S2" _chem_comp.mon_nstd_parent_comp_id A1I66 _chem_comp.pdbx_synonyms "3-azanyl-4-[[1-azanyl-6-[5-[(3~{R})-1,2-dithiolan-3-yl]pentanoylamino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-20 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.600 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I65 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QJD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I65 C1 C1 C 0 1 N N R N N N -8.536 -16.414 -57.534 -8.368 -0.945 0.398 C1 A1I65 1 A1I65 C10 C2 C 0 1 N N N N N N -11.800 -19.059 -64.695 0.183 0.625 -0.330 C10 A1I65 2 A1I65 C2 C3 C 0 1 N N N N N N -9.671 -15.375 -57.523 -9.395 -1.915 -0.191 C2 A1I65 3 A1I65 C3 C4 C 0 1 N N N N N N -9.313 -14.342 -56.476 -10.848 -1.467 -0.272 C3 A1I65 4 A1I65 C4 C5 C 0 1 N N N N N N -8.582 -17.318 -58.760 -6.999 -1.170 -0.248 C4 A1I65 5 A1I65 C5 C6 C 0 1 N N N N N N -9.751 -18.304 -58.771 -5.959 -0.282 0.439 C5 A1I65 6 A1I65 C6 C7 C 0 1 N N N N N N -10.743 -18.124 -59.908 -4.591 -0.507 -0.207 C6 A1I65 7 A1I65 C7 C8 C 0 1 N N N N N N -10.218 -18.565 -61.258 -3.551 0.382 0.479 C7 A1I65 8 A1I65 C8 C9 C 0 1 N N N N N N -11.255 -18.477 -62.352 -2.203 0.160 -0.157 C8 A1I65 9 A1I65 N9 N1 N 0 1 N N N N N N -10.932 -19.033 -63.526 -1.128 0.840 0.288 N9 A1I65 10 A1I65 O19 O1 O 0 1 N N N N N N -12.344 -17.920 -62.175 -2.085 -0.630 -1.069 O19 A1I65 11 A1I65 S20 S1 S 0 1 N N N N N N -7.749 -13.648 -57.074 -10.983 0.263 0.327 S20 A1I65 12 A1I65 S21 S2 S 0 1 N N N N N N -6.953 -15.548 -57.308 -8.986 0.746 0.004 S21 A1I65 13 A1I65 H22 H1 H 0 1 N N N N N N -8.647 -17.045 -56.640 -8.300 -1.080 1.478 H22 A1I65 14 A1I65 H101 H2 H 0 0 N N N N N N -11.681 -18.393 -65.562 0.469 -0.421 -0.220 H101 A1I65 15 A1I65 H10 H3 H 0 1 N N N N N N -12.424 -19.920 -64.977 0.131 0.878 -1.389 H10 A1I65 16 A1I65 H21 H5 H 0 1 N N N N N N -9.757 -14.898 -58.511 -9.070 -2.168 -1.201 H21 A1I65 17 A1I65 H2 H6 H 0 1 N N N N N N -10.624 -15.859 -57.266 -9.363 -2.830 0.400 H2 A1I65 18 A1I65 H3 H7 H 0 1 N N N N N N -10.088 -13.564 -56.411 -11.189 -1.522 -1.306 H3 A1I65 19 A1I65 H31 H8 H 0 1 N N N N N N -9.182 -14.812 -55.490 -11.464 -2.116 0.350 H31 A1I65 20 A1I65 H4 H9 H 0 1 N N N N N N -8.659 -16.682 -59.654 -6.713 -2.216 -0.137 H4 A1I65 21 A1I65 H41 H10 H 0 1 N N N N N N -7.645 -17.894 -58.799 -7.051 -0.917 -1.306 H41 A1I65 22 A1I65 H5 H11 H 0 1 N N N N N N -9.337 -19.321 -58.839 -6.246 0.764 0.329 H5 A1I65 23 A1I65 H51 H12 H 0 1 N N N N N N -10.297 -18.193 -57.823 -5.908 -0.535 1.498 H51 A1I65 24 A1I65 H6 H13 H 0 1 N N N N N N -11.644 -18.712 -59.678 -4.305 -1.553 -0.097 H6 A1I65 25 A1I65 H61 H14 H 0 1 N N N N N N -11.008 -17.058 -59.971 -4.643 -0.254 -1.266 H61 A1I65 26 A1I65 H7 H15 H 0 1 N N N N N N -9.367 -17.923 -61.530 -3.837 1.428 0.369 H7 A1I65 27 A1I65 H71 H16 H 0 1 N N N N N N -9.880 -19.609 -61.179 -3.499 0.129 1.538 H71 A1I65 28 A1I65 HN9 H17 H 0 1 N N N N N N -10.032 -19.460 -63.606 -1.222 1.473 1.018 HN9 A1I65 29 A1I65 C11 C10 C 0 1 N N N N N N ? ? ? 1.222 1.513 0.356 C9 A1I65 30 A1I65 C12 C11 C 0 1 N N N N N N ? ? ? 2.591 1.289 -0.290 C11 A1I65 31 A1I65 C13 C12 C 0 1 N N N N N N ? ? ? 3.631 2.177 0.396 C12 A1I65 32 A1I65 C14 C13 C 0 1 N N N N N N ? ? ? 5.000 1.952 -0.249 C13 A1I65 33 A1I65 C15 C14 C 0 1 N N N N N N ? ? ? 5.998 2.914 0.342 C14 A1I65 34 A1I65 O16 O2 O 0 1 N N N N N N ? ? ? 6.979 2.492 0.917 O1 A1I65 35 A1I65 N1 N2 N 0 1 N N N N N N ? ? ? 5.800 4.242 0.232 N1 A1I65 36 A1I65 N18 N3 N 0 1 N N N N N N ? ? ? 5.438 0.577 0.002 N2 A1I65 37 A1I65 C9 C16 C 0 1 N N N N N N ? ? ? 6.311 -0.016 -0.836 C16 A1I65 38 A1I65 O3 O3 O 0 1 N N N N N N ? ? ? 6.734 0.589 -1.799 O2 A1I65 39 A1I65 C17 C15 C 0 1 N N N N N N ? ? ? 6.762 -1.430 -0.578 C15 A1I65 40 A1I65 N2 N4 N 0 1 N N N N N N ? ? ? 7.297 -2.008 -1.818 N3 A1I65 41 A1I65 C19 C18 C 0 1 N N N N N N ? ? ? 7.852 -1.430 0.496 C18 A1I65 42 A1I65 C20 C19 C 0 1 N N N N N N ? ? ? 8.217 -2.850 0.843 C19 A1I65 43 A1I65 O1 O4 O 0 1 N N N N N N ? ? ? 9.158 -3.095 1.768 O4 A1I65 44 A1I65 O2 O5 O 0 1 N N N N N N ? ? ? 7.661 -3.769 0.288 O3 A1I65 45 A1I65 H11 H17 H 0 1 N N N N N N ? ? ? 0.936 2.559 0.246 H1 A1I65 46 A1I65 H111 H18 H 0 1 N N N N N N ? ? ? 1.274 1.260 1.415 H8 A1I65 47 A1I65 H12 H19 H 0 1 N N N N N N ? ? ? 2.877 0.243 -0.180 H9 A1I65 48 A1I65 H121 H20 H 0 1 N N N N N N ? ? ? 2.539 1.541 -1.349 H11 A1I65 49 A1I65 H131 H21 H 0 1 N N N N N N ? ? ? 3.345 3.223 0.286 H12 A1I65 50 A1I65 H13 H22 H 0 1 N N N N N N ? ? ? 3.683 1.924 1.456 H13 A1I65 51 A1I65 H14 H23 H 0 1 N N N N N N ? ? ? 4.926 2.119 -1.324 H14 A1I65 52 A1I65 HN1 H24 H 0 1 N N N N N N ? ? ? 5.016 4.580 -0.228 H15 A1I65 53 A1I65 HN11 H25 H 0 1 N N N N N N ? ? ? 6.443 4.861 0.613 H16 A1I65 54 A1I65 HN18 H26 H 0 1 N N N N N N ? ? ? 5.100 0.093 0.772 H17 A1I65 55 A1I65 H1 H27 H 0 1 N N N N N N ? ? ? 5.915 -2.025 -0.235 H18 A1I65 56 A1I65 H8 H28 H 0 1 N N N N N N ? ? ? 8.083 -1.474 -2.156 H19 A1I65 57 A1I65 H9 H29 H 0 1 N N N N N N ? ? ? 7.547 -2.977 -1.687 H20 A1I65 58 A1I65 H15 H30 H 0 1 N N N N N N ? ? ? 8.733 -0.910 0.119 H23 A1I65 59 A1I65 H16 H31 H 0 1 N N N N N N ? ? ? 7.484 -0.921 1.387 H24 A1I65 60 A1I65 H17 H32 H 0 1 N N N N N N ? ? ? 9.357 -4.022 1.956 H25 A1I65 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I65 C1 C2 SING N N 1 A1I65 C1 C4 SING N N 2 A1I65 C1 S21 SING N N 3 A1I65 C2 C3 SING N N 4 A1I65 C3 S20 SING N N 5 A1I65 C4 C5 SING N N 6 A1I65 C5 C6 SING N N 7 A1I65 C6 C7 SING N N 8 A1I65 C7 C8 SING N N 9 A1I65 C8 N9 SING N N 10 A1I65 C8 O19 DOUB N N 11 A1I65 N9 C10 SING N N 12 A1I65 S20 S21 SING N N 13 A1I65 C1 H22 SING N N 14 A1I65 C10 H101 SING N N 15 A1I65 C10 H10 SING N N 16 A1I65 C2 H21 SING N N 17 A1I65 C2 H2 SING N N 18 A1I65 C3 H3 SING N N 19 A1I65 C3 H31 SING N N 20 A1I65 C4 H4 SING N N 21 A1I65 C4 H41 SING N N 22 A1I65 C5 H5 SING N N 23 A1I65 C5 H51 SING N N 24 A1I65 C6 H6 SING N N 25 A1I65 C6 H61 SING N N 26 A1I65 C7 H7 SING N N 27 A1I65 C7 H71 SING N N 28 A1I65 N9 HN9 SING N N 29 A1I65 C10 C11 SING N N 30 A1I65 C11 C12 SING N N 31 A1I65 C12 C13 SING N N 32 A1I65 C13 C14 SING N N 33 A1I65 C14 C15 SING N N 34 A1I65 C15 O16 DOUB N N 35 A1I65 C15 N1 SING N N 36 A1I65 C14 N18 SING N N 37 A1I65 N18 C9 SING N N 38 A1I65 C9 O3 DOUB N N 39 A1I65 C9 C17 SING N N 40 A1I65 C17 N2 SING N N 41 A1I65 C17 C19 SING N N 42 A1I65 C19 C20 SING N N 43 A1I65 C20 O1 SING N N 44 A1I65 C20 O2 DOUB N N 45 A1I65 C11 H11 SING N N 46 A1I65 C11 H111 SING N N 47 A1I65 C12 H12 SING N N 48 A1I65 C12 H121 SING N N 49 A1I65 C13 H131 SING N N 50 A1I65 C13 H13 SING N N 51 A1I65 C14 H14 SING N N 52 A1I65 N1 HN1 SING N N 53 A1I65 N1 HN11 SING N N 54 A1I65 N18 HN18 SING N N 55 A1I65 C17 H1 SING N N 56 A1I65 N2 H8 SING N N 57 A1I65 N2 H9 SING N N 58 A1I65 C19 H15 SING N N 59 A1I65 C19 H16 SING N N 60 A1I65 O1 H17 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I65 InChI InChI 1.06 "InChI=1S/C18H32N4O5S2/c19-13(11-16(24)25)18(27)22-14(17(20)26)6-3-4-9-21-15(23)7-2-1-5-12-8-10-28-29-12/h12-14H,1-11,19H2,(H2,20,26)(H,21,23)(H,22,27)(H,24,25)/t12-,13?,14?/m1/s1" A1I65 InChIKey InChI 1.06 ZPEBXPMXEYTCQW-IYXRBSQSSA-N A1I65 SMILES_CANONICAL CACTVS 3.385 "NC(CC(O)=O)C(=O)NC(CCCCNC(=O)CCCC[C@@H]1CCSS1)C(N)=O" A1I65 SMILES CACTVS 3.385 "NC(CC(O)=O)C(=O)NC(CCCCNC(=O)CCCC[CH]1CCSS1)C(N)=O" A1I65 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CSS[C@@H]1CCCCC(=O)NCCCCC(C(=O)N)NC(=O)C(CC(=O)O)N" A1I65 SMILES "OpenEye OEToolkits" 2.0.7 "C1CSSC1CCCCC(=O)NCCCCC(C(=O)N)NC(=O)C(CC(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1I65 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-azanyl-4-[[1-azanyl-6-[5-[(3~{R})-1,2-dithiolan-3-yl]pentanoylamino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1I65 _pdbx_chem_comp_synonyms.name "3-azanyl-4-[[1-azanyl-6-[5-[(3~{R})-1,2-dithiolan-3-yl]pentanoylamino]-1-oxidanylidene-hexan-2-yl]amino]-4-oxidanylidene-butanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I65 "Create component" 2025-03-20 PDBE A1I65 "Other modification" 2025-03-20 PDBE A1I65 "Modify coordinates" 2025-03-20 PDBE A1I65 "Modify atom id" 2025-06-20 PDBE A1I65 "Initial release" 2026-09-30 RCSB #