data_A1I67 # _chem_comp.id A1I67 _chem_comp.name "(2~{R},3~{S},6~{R},7~{S})-7-[(1~{S})-1-azanyl-3-methyl-butyl]-2,6-dimethyl-6,7-bis(oxidanyl)-1,4-oxazepane-3-carbaldehyde" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H26 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-20 _chem_comp.pdbx_modified_date 2025-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I67 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QB4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I67 N N1 N 0 1 N N N Y Y N 62.365 -135.669 41.459 2.180 -0.648 2.056 N41 A1I67 1 A1I67 C42 C1 C 0 1 N N S N Y N 63.480 -135.616 42.417 1.964 0.139 0.835 C42 A1I67 2 A1I67 C43 C2 C 0 1 N N N N N N 63.384 -134.254 43.135 2.528 -0.621 -0.368 C43 A1I67 3 A1I67 C44 C3 C 0 1 N N N N N N 64.294 -133.127 42.570 4.031 -0.831 -0.179 C44 A1I67 4 A1I67 C46 C4 C 0 1 N N N N N N 64.851 -133.355 41.144 4.572 -1.697 -1.318 C46 A1I67 5 A1I67 C45 C5 C 0 1 N N N N N N 63.527 -131.794 42.604 4.741 0.524 -0.187 C45 A1I67 6 A1I67 C47 C6 C 0 1 N N S N Y N 63.365 -136.749 43.444 0.464 0.368 0.635 C47 A1I67 7 A1I67 O48 O1 O 0 1 N N N N N N 62.092 -136.578 44.096 -0.093 0.968 1.807 O48 A1I67 8 A1I67 OG1 O2 O 0 1 N N N N Y N 64.461 -136.520 44.328 -0.189 -0.884 0.373 OG1 A1I67 9 A1I67 CB C7 C 0 1 N N R N Y N 64.283 -136.990 45.649 -1.535 -0.948 0.589 CB A1I67 10 A1I67 CG2 C8 C 0 1 N N N N N N 64.895 -135.942 46.584 -2.022 -2.368 0.297 CG2 A1I67 11 A1I67 CA C9 C 0 1 N N S N Y N 64.969 -138.337 45.723 -2.299 0.044 -0.315 CA A1I67 12 A1I67 C C10 C 0 1 N N N N Y Y 65.000 -138.790 47.167 -3.762 -0.317 -0.336 C A1I67 13 A1I67 O O3 O 0 1 N N N N Y Y 64.121 -139.514 47.633 -4.544 0.291 0.355 O A1I67 14 A1I67 N2 N2 N 0 1 N N N N N N 64.192 -139.380 45.000 -2.138 1.383 0.212 N A1I67 15 A1I67 C58 C11 C 0 1 N N N N N N 64.458 -139.163 43.576 -1.012 2.138 -0.384 C58 A1I67 16 A1I67 C51 C12 C 0 1 N N R N N N 63.449 -138.232 42.842 0.239 1.270 -0.556 C51 A1I67 17 A1I67 C59 C13 C 0 1 N N N N N N 63.891 -138.281 41.367 0.076 0.408 -1.809 C59 A1I67 18 A1I67 O60 O4 O 0 1 N N N N N N 62.141 -138.844 42.910 1.377 2.119 -0.719 O60 A1I67 19 A1I67 H H1 H 0 1 N N N Y Y N 62.388 -136.540 40.968 1.913 -0.124 2.876 H1 A1I67 20 A1I67 H2 H2 H 0 1 N Y N Y Y N 61.498 -135.587 41.951 1.688 -1.527 2.012 H2 A1I67 21 A1I67 H4 H4 H 0 1 N N N N Y N 64.444 -135.688 41.892 2.469 1.100 0.927 H4 A1I67 22 A1I67 H5 H5 H 0 1 N N N N N N 62.341 -133.911 43.070 2.033 -1.588 -0.451 H5 A1I67 23 A1I67 H6 H6 H 0 1 N N N N N N 63.654 -134.409 44.190 2.353 -0.044 -1.276 H6 A1I67 24 A1I67 H7 H7 H 0 1 N N N N N N 65.155 -133.031 43.248 4.211 -1.330 0.774 H7 A1I67 25 A1I67 H8 H8 H 0 1 N N N N N N 65.401 -134.307 41.113 5.643 -1.847 -1.184 H8 A1I67 26 A1I67 H9 H9 H 0 1 N N N N N N 64.018 -133.389 40.426 4.067 -2.663 -1.313 H9 A1I67 27 A1I67 H10 H10 H 0 1 N N N N N N 65.530 -132.531 40.879 4.392 -1.198 -2.271 H10 A1I67 28 A1I67 H11 H11 H 0 1 N N N N N N 63.128 -131.626 43.615 4.561 1.023 -1.139 H11 A1I67 29 A1I67 H12 H12 H 0 1 N N N N N N 64.208 -130.972 42.337 4.356 1.141 0.625 H12 A1I67 30 A1I67 H13 H13 H 0 1 N N N N N N 62.696 -131.831 41.884 5.812 0.374 -0.052 H13 A1I67 31 A1I67 H14 H14 H 0 1 N N N N N N 61.974 -137.261 44.746 0.008 0.434 2.607 H14 A1I67 32 A1I67 H15 H15 H 0 1 N N N N Y N 63.215 -137.108 45.885 -1.740 -0.710 1.633 H15 A1I67 33 A1I67 H16 H16 H 0 1 N N N N N N 64.778 -136.268 47.628 -1.510 -3.071 0.956 H16 A1I67 34 A1I67 H17 H17 H 0 1 N N N N N N 65.964 -135.825 46.354 -3.096 -2.427 0.468 H17 A1I67 35 A1I67 H18 H18 H 0 1 N N N N N N 64.382 -134.979 46.441 -1.805 -2.621 -0.741 H18 A1I67 36 A1I67 H19 H19 H 0 1 N N N N Y N 65.991 -138.267 45.323 -1.897 -0.002 -1.327 H19 A1I67 37 A1I67 H21 H21 H 0 1 N N N N N N 63.215 -139.281 45.191 -2.073 1.371 1.219 H21 A1I67 38 A1I67 H23 H23 H 0 1 N N N N N N 64.443 -140.142 43.075 -1.317 2.518 -1.359 H23 A1I67 39 A1I67 H24 H24 H 0 1 N N N N N N 65.460 -138.719 43.482 -0.769 2.981 0.264 H24 A1I67 40 A1I67 H25 H25 H 0 1 N N N N N N 64.886 -137.824 41.267 1.059 0.154 -2.206 H25 A1I67 41 A1I67 H26 H26 H 0 1 N N N N N N 63.933 -139.328 41.031 -0.460 -0.506 -1.555 H26 A1I67 42 A1I67 H27 H27 H 0 1 N N N N N N 63.169 -137.727 40.749 -0.486 0.962 -2.561 H27 A1I67 43 A1I67 H28 H28 H 0 1 N N N N N N 61.832 -138.833 43.808 1.309 2.729 -1.466 H28 A1I67 44 A1I67 OXT O5 O 0 1 N Y N N Y Y ? ? ? -4.195 -1.315 -1.122 O1 A1I67 45 A1I67 HXT H3 H 0 1 N Y N N Y Y ? ? ? -5.142 -1.510 -1.102 H3 A1I67 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I67 C46 C44 SING N N 1 A1I67 C59 C51 SING N N 2 A1I67 N C42 SING N N 3 A1I67 C42 C43 SING N N 4 A1I67 C42 C47 SING N N 5 A1I67 C44 C45 SING N N 6 A1I67 C44 C43 SING N N 7 A1I67 C51 O60 SING N N 8 A1I67 C51 C47 SING N N 9 A1I67 C51 C58 SING N N 10 A1I67 C47 O48 SING N N 11 A1I67 C47 OG1 SING N N 12 A1I67 C58 N2 SING N N 13 A1I67 OG1 CB SING N N 14 A1I67 N2 CA SING N N 15 A1I67 CB CA SING N N 16 A1I67 CB CG2 SING N N 17 A1I67 CA C SING N N 18 A1I67 C O DOUB N N 19 A1I67 N H SING N N 20 A1I67 N H2 SING N N 21 A1I67 C42 H4 SING N N 22 A1I67 C43 H5 SING N N 23 A1I67 C43 H6 SING N N 24 A1I67 C44 H7 SING N N 25 A1I67 C46 H8 SING N N 26 A1I67 C46 H9 SING N N 27 A1I67 C46 H10 SING N N 28 A1I67 C45 H11 SING N N 29 A1I67 C45 H12 SING N N 30 A1I67 C45 H13 SING N N 31 A1I67 O48 H14 SING N N 32 A1I67 CB H15 SING N N 33 A1I67 CG2 H16 SING N N 34 A1I67 CG2 H17 SING N N 35 A1I67 CG2 H18 SING N N 36 A1I67 CA H19 SING N N 37 A1I67 N2 H21 SING N N 38 A1I67 C58 H23 SING N N 39 A1I67 C58 H24 SING N N 40 A1I67 C59 H25 SING N N 41 A1I67 C59 H26 SING N N 42 A1I67 C59 H27 SING N N 43 A1I67 O60 H28 SING N N 44 A1I67 C OXT SING N N 45 A1I67 OXT HXT SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I67 InChI InChI 1.06 "InChI=1S/C13H26N2O5/c1-7(2)5-9(14)13(19)12(4,18)6-15-10(11(16)17)8(3)20-13/h7-10,15,18-19H,5-6,14H2,1-4H3,(H,16,17)/t8-,9+,10+,12-,13+/m1/s1" A1I67 InChIKey InChI 1.06 WRFMPGAQIMAYEQ-XYNYFCMSSA-N A1I67 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N)[C@]1(O)O[C@H](C)[C@H](NC[C@@]1(C)O)C(O)=O" A1I67 SMILES CACTVS 3.385 "CC(C)C[CH](N)[C]1(O)O[CH](C)[CH](NC[C]1(C)O)C(O)=O" A1I67 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H](NC[C@@]([C@@](O1)([C@H](CC(C)C)N)O)(C)O)C(=O)O" A1I67 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(NCC(C(O1)(C(CC(C)C)N)O)(C)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1I67 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},6~{R},7~{S})-7-[(1~{S})-1-azanyl-3-methyl-butyl]-2,6-dimethyl-6,7-bis(oxidanyl)-1,4-oxazepane-3-carboxylic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1I67 _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom . _pdbx_chem_comp_pcm.modified_residue_id_linking_atom . _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I67 "Create component" 2025-03-20 PDBE A1I67 "Initial release" 2025-04-02 RCSB A1I67 "Modify leaving atom flag" 2025-04-03 PDBE A1I67 "Modify PCM" 2025-04-03 PDBE #