data_A1I7V # _chem_comp.id A1I7V _chem_comp.name "[4-(9~{H}-fluoren-9-yl)piperazin-1-yl]-(5-nitro-1-benzothiophen-2-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H21 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I7V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QKG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I7V N1 N1 N 1 1 N N N N N N 16.275 -19.534 68.334 -8.113 0.101 -0.266 N1 A1I7V 1 A1I7V N3 N2 N 0 1 N N N N N N 8.421 -25.951 63.311 2.541 0.711 -0.742 N3 A1I7V 2 A1I7V C4 C1 C 0 1 Y N N N N N 13.665 -21.877 67.122 -4.411 0.378 0.361 C4 A1I7V 3 A1I7V C5 C2 C 0 1 Y N N N N N 14.590 -21.272 67.960 -5.804 0.630 0.379 C5 A1I7V 4 A1I7V C6 C3 C 0 1 Y N N N N N 15.273 -20.176 67.471 -6.660 -0.180 -0.299 C6 A1I7V 5 A1I7V C7 C4 C 0 1 Y N N N N N 15.055 -19.652 66.210 -6.186 -1.268 -1.021 C7 A1I7V 6 A1I7V C8 C5 C 0 1 Y N N N N N 14.119 -20.245 65.374 -4.839 -1.539 -1.058 C8 A1I7V 7 A1I7V C10 C6 C 0 1 N N N N N N 9.552 -23.984 64.339 0.121 1.063 -0.867 C10 A1I7V 8 A1I7V C13 C7 C 0 1 Y N N N N N 6.879 -26.959 65.153 4.970 0.701 -0.992 C13 A1I7V 9 A1I7V C15 C8 C 0 1 Y N N N N N 6.430 -26.354 67.435 6.655 2.394 -1.128 C15 A1I7V 10 A1I7V C17 C9 C 0 1 Y N N N N N 4.753 -27.556 66.195 7.028 0.457 0.231 C17 A1I7V 11 A1I7V C20 C10 C 0 1 Y N N N N N 4.366 -28.835 63.226 5.453 -2.342 1.085 C20 A1I7V 12 A1I7V C21 C11 C 0 1 Y N N N N N 4.441 -29.250 61.910 4.603 -3.410 1.280 C21 A1I7V 13 A1I7V C22 C12 C 0 1 Y N N N N N 5.538 -28.917 61.130 3.369 -3.442 0.655 C22 A1I7V 14 A1I7V C24 C13 C 0 1 Y N N N N N 6.499 -27.729 62.951 3.828 -1.331 -0.374 C24 A1I7V 15 A1I7V C26 C14 C 0 1 N N N N N N 10.391 -26.251 64.728 1.444 1.827 1.142 C26 A1I7V 16 A1I7V C1 C15 C 0 1 N N N N N N 11.056 -24.548 66.297 -0.920 1.211 1.349 C1 A1I7V 17 A1I7V C11 C16 C 0 1 N N N N N N 8.231 -24.620 63.901 1.280 0.121 -1.210 C11 A1I7V 18 A1I7V C12 C17 C 0 1 N N N N N N 7.586 -27.070 63.787 3.693 -0.076 -1.201 C12 A1I7V 19 A1I7V C14 C18 C 0 1 Y N N N N N 7.292 -26.367 66.340 5.410 1.910 -1.487 C14 A1I7V 20 A1I7V C16 C19 C 0 1 Y N N N N N 5.172 -26.942 67.366 7.461 1.667 -0.270 C16 A1I7V 21 A1I7V C18 C20 C 0 1 Y N N N N N 5.615 -27.554 65.095 5.773 -0.039 -0.128 C18 A1I7V 22 A1I7V C19 C21 C 0 1 Y N N N N N 5.422 -28.103 63.752 5.070 -1.288 0.253 C19 A1I7V 23 A1I7V C2 C22 C 0 1 Y N N N N N 12.010 -23.409 66.325 -2.144 0.618 0.789 C2 A1I7V 24 A1I7V C23 C23 C 0 1 Y N N N N N 6.591 -28.182 61.656 2.983 -2.402 -0.171 C23 A1I7V 25 A1I7V C25 C24 C 0 1 N N N N N N 9.837 -26.317 63.318 2.551 0.855 0.720 C25 A1I7V 26 A1I7V C3 C25 C 0 1 Y N N N N N 12.875 -23.068 67.452 -3.378 1.094 0.986 C3 A1I7V 27 A1I7V C9 C26 C 0 1 Y N N N N N 13.427 -21.360 65.841 -3.938 -0.720 -0.369 C9 A1I7V 28 A1I7V N2 N3 N 0 1 N N N N N N 10.335 -24.871 65.204 0.171 1.361 0.572 N2 A1I7V 29 A1I7V O1 O1 O 0 1 N N N N N N 11.098 -25.299 67.272 -0.893 1.566 2.512 O1 A1I7V 30 A1I7V O2 O2 O 0 1 N N N N N N 16.883 -20.231 69.132 -8.536 1.052 0.365 O2 A1I7V 31 A1I7V O3 O3 O -1 1 N N N N N N 16.468 -18.335 68.206 -8.885 -0.618 -0.875 O3 A1I7V 32 A1I7V S1 S1 S 0 1 Y N N N N N 12.208 -22.283 65.007 -2.186 -0.809 -0.230 S1 A1I7V 33 A1I7V H2 H2 H 0 1 N N N N N N 14.769 -21.644 68.958 -6.189 1.471 0.936 H2 A1I7V 34 A1I7V H3 H3 H 0 1 N N N N N N 15.610 -18.787 65.878 -6.877 -1.903 -1.554 H3 A1I7V 35 A1I7V H4 H4 H 0 1 N N N N N N 13.932 -19.852 64.386 -4.475 -2.386 -1.621 H4 A1I7V 36 A1I7V H6 H5 H 0 1 N N N N N N 9.333 -23.056 64.888 0.220 1.988 -1.436 H6 A1I7V 37 A1I7V H5 H6 H 0 1 N N N N N N 10.146 -23.748 63.443 -0.826 0.582 -1.111 H5 A1I7V 38 A1I7V H11 H7 H 0 1 N N N N N N 6.744 -25.879 68.353 6.998 3.341 -1.518 H11 A1I7V 39 A1I7V H13 H8 H 0 1 N N N N N N 3.782 -28.025 66.135 7.661 -0.108 0.900 H13 A1I7V 40 A1I7V H14 H9 H 0 1 N N N N N N 3.505 -29.075 63.832 6.415 -2.321 1.575 H14 A1I7V 41 A1I7V H15 H10 H 0 1 N N N N N N 3.640 -29.838 61.486 4.901 -4.225 1.924 H15 A1I7V 42 A1I7V H16 H11 H 0 1 N N N N N N 5.573 -29.234 60.098 2.707 -4.281 0.811 H16 A1I7V 43 A1I7V H21 H12 H 0 1 N N N N N N 9.790 -26.893 65.389 1.372 1.850 2.230 H21 A1I7V 44 A1I7V H20 H13 H 0 1 N N N N N N 11.435 -26.598 64.729 1.672 2.826 0.769 H20 A1I7V 45 A1I7V H7 H14 H 0 1 N N N N N N 7.575 -24.713 64.779 1.324 -0.023 -2.289 H7 A1I7V 46 A1I7V H8 H15 H 0 1 N N N N N N 7.755 -23.967 63.155 1.124 -0.840 -0.721 H8 A1I7V 47 A1I7V H9 H16 H 0 1 N N N N N N 8.309 -27.884 63.947 3.577 -0.330 -2.255 H9 A1I7V 48 A1I7V H10 H17 H 0 1 N N N N N N 8.273 -25.921 66.414 4.782 2.479 -2.157 H10 A1I7V 49 A1I7V H12 H18 H 0 1 N N N N N N 4.519 -26.921 68.226 8.432 2.048 0.007 H12 A1I7V 50 A1I7V H17 H19 H 0 1 N N N N N N 7.466 -27.970 61.060 2.020 -2.429 -0.659 H17 A1I7V 51 A1I7V H18 H20 H 0 1 N N N N N N 9.949 -27.341 62.932 2.378 -0.116 1.183 H18 A1I7V 52 A1I7V H19 H21 H 0 1 N N N N N N 10.395 -25.620 62.676 3.518 1.243 1.041 H19 A1I7V 53 A1I7V H1 H22 H 0 1 N N N N N N 12.925 -23.610 68.385 -3.567 1.972 1.586 H1 A1I7V 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I7V O1 C1 DOUB N N 1 A1I7V C1 C2 SING N N 2 A1I7V C2 C3 DOUB Y N 3 A1I7V C3 C4 SING Y N 4 A1I7V C4 C5 SING Y N 5 A1I7V C5 C6 DOUB Y N 6 A1I7V C6 N1 SING N N 7 A1I7V N1 O2 DOUB N N 8 A1I7V N1 O3 SING N N 9 A1I7V C6 C7 SING Y N 10 A1I7V C7 C8 DOUB Y N 11 A1I7V C8 C9 SING Y N 12 A1I7V C9 S1 SING Y N 13 A1I7V C1 N2 SING N N 14 A1I7V N2 C10 SING N N 15 A1I7V C10 C11 SING N N 16 A1I7V C11 N3 SING N N 17 A1I7V N3 C12 SING N N 18 A1I7V C12 C13 SING N N 19 A1I7V C13 C14 SING Y N 20 A1I7V C14 C15 DOUB Y N 21 A1I7V C15 C16 SING Y N 22 A1I7V C16 C17 DOUB Y N 23 A1I7V C17 C18 SING Y N 24 A1I7V C18 C19 SING N N 25 A1I7V C19 C20 SING Y N 26 A1I7V C20 C21 DOUB Y N 27 A1I7V C21 C22 SING Y N 28 A1I7V C22 C23 DOUB Y N 29 A1I7V C23 C24 SING Y N 30 A1I7V N3 C25 SING N N 31 A1I7V C25 C26 SING N N 32 A1I7V C2 S1 SING Y N 33 A1I7V N2 C26 SING N N 34 A1I7V C4 C9 DOUB Y N 35 A1I7V C12 C24 SING N N 36 A1I7V C13 C18 DOUB Y N 37 A1I7V C19 C24 DOUB Y N 38 A1I7V C5 H2 SING N N 39 A1I7V C7 H3 SING N N 40 A1I7V C8 H4 SING N N 41 A1I7V C10 H6 SING N N 42 A1I7V C10 H5 SING N N 43 A1I7V C15 H11 SING N N 44 A1I7V C17 H13 SING N N 45 A1I7V C20 H14 SING N N 46 A1I7V C21 H15 SING N N 47 A1I7V C22 H16 SING N N 48 A1I7V C26 H21 SING N N 49 A1I7V C26 H20 SING N N 50 A1I7V C11 H7 SING N N 51 A1I7V C11 H8 SING N N 52 A1I7V C12 H9 SING N N 53 A1I7V C14 H10 SING N N 54 A1I7V C16 H12 SING N N 55 A1I7V C23 H17 SING N N 56 A1I7V C25 H18 SING N N 57 A1I7V C25 H19 SING N N 58 A1I7V C3 H1 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I7V InChI InChI 1.06 "InChI=1S/C26H21N3O3S/c30-26(24-16-17-15-18(29(31)32)9-10-23(17)33-24)28-13-11-27(12-14-28)25-21-7-3-1-5-19(21)20-6-2-4-8-22(20)25/h1-10,15-16,25H,11-14H2" A1I7V InChIKey InChI 1.06 LGGKFLNFMUJAKF-UHFFFAOYSA-N A1I7V SMILES_CANONICAL CACTVS 3.385 "[O-][N+](=O)c1ccc2sc(cc2c1)C(=O)N3CCN(CC3)C4c5ccccc5c6ccccc46" A1I7V SMILES CACTVS 3.385 "[O-][N+](=O)c1ccc2sc(cc2c1)C(=O)N3CCN(CC3)C4c5ccccc5c6ccccc46" A1I7V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2N4CCN(CC4)C(=O)c5cc6cc(ccc6s5)[N+](=O)[O-]" A1I7V SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2N4CCN(CC4)C(=O)c5cc6cc(ccc6s5)[N+](=O)[O-]" # _pdbx_chem_comp_identifier.comp_id A1I7V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-(9~{H}-fluoren-9-yl)piperazin-1-yl]-(5-nitro-1-benzothiophen-2-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I7V "Create component" 2025-03-24 PDBE A1I7V "Initial release" 2026-09-16 RCSB #