data_A1I7Z # _chem_comp.id A1I7Z _chem_comp.name "Oxidized Aspartyl-S-Lipoyllysine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 N3 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{R})-2-[[(2~{S})-2-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-6-[5-[(3~{S})-1,2-dithiolan-3-yl]pentanoylamino]hexanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-25 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.585 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I7Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QKU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I7Z C1 C1 C 0 1 N N S N N N 4.160 -2.947 -36.482 8.134 0.763 -0.475 C1 A1I7Z 1 A1I7Z C2 C2 C 0 1 N N N N N N 5.143 -3.456 -37.537 9.163 1.790 0.038 C2 A1I7Z 2 A1I7Z C3 C3 C 0 1 N N N N N N 5.486 -4.883 -37.167 10.599 1.337 -0.295 C3 A1I7Z 3 A1I7Z C4 C4 C 0 1 N N N N N N 4.102 -1.440 -36.318 6.747 1.081 0.086 C4 A1I7Z 4 A1I7Z C10 C5 C 0 1 N N N N N N 2.618 5.330 -39.106 -0.437 -0.702 0.225 C10 A1I7Z 5 A1I7Z C11 C6 C 0 1 N N N N N N 1.518 6.092 -38.403 -1.457 -1.688 -0.348 C11 A1I7Z 6 A1I7Z C12 C7 C 0 1 N N N N N N 1.681 7.596 -38.581 -2.845 -1.371 0.213 C12 A1I7Z 7 A1I7Z C13 C8 C 0 1 N N N N N N 0.598 8.382 -37.864 -3.864 -2.357 -0.359 C13 A1I7Z 8 A1I7Z C14 C9 C 0 1 N N R N N N 0.775 9.902 -37.994 -5.252 -2.040 0.202 C14 A1I7Z 9 A1I7Z C15 C10 C 0 1 N N N N N N -0.307 10.666 -37.213 -6.233 -3.084 -0.264 C15 A1I7Z 10 A1I7Z C16 C11 C 0 1 N N S N N N 3.142 10.949 -38.872 -7.018 1.347 -0.049 C16 A1I7Z 11 A1I7Z C26 C12 C 0 1 N N N N N N 3.334 12.426 -38.551 -5.959 2.389 0.317 C26 A1I7Z 12 A1I7Z C27 C13 C 0 1 N N N N N N 4.074 12.732 -37.256 -6.339 3.722 -0.276 C27 A1I7Z 13 A1I7Z C5 C14 C 0 1 N N N N N N 3.698 -0.669 -37.577 5.727 0.094 -0.486 C5 A1I7Z 14 A1I7Z C6 C15 C 0 1 N N N N N N 3.627 0.838 -37.333 4.340 0.412 0.075 C6 A1I7Z 15 A1I7Z C7 C16 C 0 1 N N N N N N 3.226 1.621 -38.570 3.320 -0.575 -0.498 C7 A1I7Z 16 A1I7Z C8 C17 C 0 1 N N N N N N 3.439 3.116 -38.476 1.953 -0.262 0.055 C8 A1I7Z 17 A1I7Z C9 C18 C 0 1 N N N N N N 2.006 10.800 -39.880 -6.577 -0.009 0.438 C9 A1I7Z 18 A1I7Z N18 N1 N 0 1 N N N N N N 0.856 10.316 -39.383 -5.680 -0.721 -0.272 N18 A1I7Z 19 A1I7Z N29 N2 N 0 1 N N N N N N 4.365 10.360 -39.494 -8.295 1.704 0.584 N29 A1I7Z 20 A1I7Z N9 N3 N 0 1 N N N N N N 2.469 3.887 -38.976 0.891 -1.006 -0.313 N9 A1I7Z 21 A1I7Z O1 O1 O 0 1 N N N N N N -1.432 10.126 -37.101 -6.042 -4.374 0.054 O1 A1I7Z 22 A1I7Z O16 O2 O 0 1 N N N N N N 0.018 11.774 -36.730 -7.192 -2.760 -0.924 O16 A1I7Z 23 A1I7Z O19 O3 O 0 1 N N N N N N 4.476 3.604 -38.022 1.809 0.659 0.830 O19 A1I7Z 24 A1I7Z O24 O4 O 0 1 N N N N N N 2.169 11.073 -41.064 -7.030 -0.460 1.469 O24 A1I7Z 25 A1I7Z O28 O5 O 0 1 N N N N N N 5.286 12.438 -37.186 -7.353 3.827 -0.924 O28 A1I7Z 26 A1I7Z O29 O6 O 0 1 N N N N N N 3.426 13.251 -36.323 -5.551 4.791 -0.084 O29 A1I7Z 27 A1I7Z S20 S1 S 0 1 N N N N N N 6.187 -4.783 -35.498 10.720 -0.398 0.288 S20 A1I7Z 28 A1I7Z S21 S2 S 0 1 N N N N N N 4.477 -3.804 -34.885 8.709 -0.866 0.141 S21 A1I7Z 29 A1I7Z H22 H1 H 0 1 N N N N N N 3.156 -3.286 -36.779 8.110 0.767 -1.565 H22 A1I7Z 30 A1I7Z H21 H2 H 0 1 N N N N N N 4.678 -3.425 -38.533 8.973 2.754 -0.433 H21 A1I7Z 31 A1I7Z H2 H3 H 0 1 N N N N N N 6.052 -2.836 -37.537 9.061 1.893 1.118 H2 A1I7Z 32 A1I7Z H3 H4 H 0 1 N N N N N N 4.582 -5.510 -37.169 10.769 1.386 -1.370 H3 A1I7Z 33 A1I7Z H31 H5 H 0 1 N N N N N N 6.222 -5.298 -37.871 11.321 1.962 0.230 H31 A1I7Z 34 A1I7Z H4 H6 H 0 1 N N N N N N 3.372 -1.210 -35.528 6.766 0.994 1.173 H4 A1I7Z 35 A1I7Z H41 H7 H 0 1 N N N N N N 5.099 -1.091 -36.009 6.466 2.096 -0.192 H41 A1I7Z 36 A1I7Z H101 H8 H 0 0 N N N N N N 3.585 5.625 -38.672 -0.718 0.314 -0.054 H101 A1I7Z 37 A1I7Z H10 H9 H 0 1 N N N N N N 2.601 5.591 -40.174 -0.418 -0.788 1.311 H10 A1I7Z 38 A1I7Z H11 H10 H 0 1 N N N N N N 0.547 5.786 -38.820 -1.476 -1.602 -1.434 H11 A1I7Z 39 A1I7Z H111 H11 H 0 0 N N N N N N 1.547 5.854 -37.330 -1.176 -2.704 -0.069 H111 A1I7Z 40 A1I7Z H121 H12 H 0 0 N N N N N N 2.660 7.896 -38.179 -2.826 -1.457 1.300 H121 A1I7Z 41 A1I7Z H12 H13 H 0 1 N N N N N N 1.637 7.832 -39.655 -3.125 -0.355 -0.065 H12 A1I7Z 42 A1I7Z H13 H14 H 0 1 N N N N N N -0.377 8.105 -38.291 -3.883 -2.271 -1.446 H13 A1I7Z 43 A1I7Z H131 H15 H 0 0 N N N N N N 0.620 8.116 -36.797 -3.583 -3.373 -0.081 H131 A1I7Z 44 A1I7Z H14 H16 H 0 1 N N N N N N 1.736 10.147 -37.518 -5.212 -2.039 1.291 H14 A1I7Z 45 A1I7Z H16 H17 H 0 1 N N N N N N 2.889 10.403 -37.951 -7.143 1.321 -1.131 H16 A1I7Z 46 A1I7Z H261 H18 H 0 0 N N N N N N 3.899 12.880 -39.378 -5.896 2.479 1.401 H261 A1I7Z 47 A1I7Z H26 H19 H 0 1 N N N N N N 2.339 12.890 -38.489 -4.992 2.079 -0.079 H26 A1I7Z 48 A1I7Z H5 H20 H 0 1 N N N N N N 4.439 -0.866 -38.366 5.708 0.181 -1.573 H5 A1I7Z 49 A1I7Z H51 H21 H 0 1 N N N N N N 2.709 -1.022 -37.906 6.008 -0.921 -0.208 H51 A1I7Z 50 A1I7Z H61 H22 H 0 1 N N N N N N 2.888 1.030 -36.541 4.359 0.325 1.161 H61 A1I7Z 51 A1I7Z H6 H23 H 0 1 N N N N N N 4.617 1.187 -37.003 4.059 1.428 -0.204 H6 A1I7Z 52 A1I7Z H7 H24 H 0 1 N N N N N N 3.816 1.245 -39.419 3.301 -0.488 -1.584 H7 A1I7Z 53 A1I7Z H71 H25 H 0 1 N N N N N N 2.157 1.439 -38.757 3.601 -1.590 -0.219 H71 A1I7Z 54 A1I7Z HN18 H26 H 0 0 N N N N N N 0.052 10.240 -39.973 -5.318 -0.361 -1.096 HN18 A1I7Z 55 A1I7Z HN22 H27 H 0 0 N N N N N N 5.134 10.440 -38.859 -9.026 1.067 0.306 HN22 A1I7Z 56 A1I7Z HN21 H28 H 0 0 N N N N N N 4.202 9.395 -39.700 -8.204 1.735 1.588 HN21 A1I7Z 57 A1I7Z HN9 H30 H 0 1 N N N N N N 1.614 3.460 -39.270 1.007 -1.743 -0.933 HN9 A1I7Z 58 A1I7Z H1 H31 H 0 1 N N N N N N -2.004 10.688 -36.591 -6.698 -5.007 -0.268 H1 A1I7Z 59 A1I7Z H8 H32 H 0 1 N N N N N N 3.996 13.380 -35.574 -5.837 5.624 -0.484 H8 A1I7Z 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I7Z C1 S21 SING N N 1 A1I7Z C1 C2 SING N N 2 A1I7Z C2 C3 SING N N 3 A1I7Z C1 C4 SING N N 4 A1I7Z C4 C5 SING N N 5 A1I7Z C5 C6 SING N N 6 A1I7Z C6 C7 SING N N 7 A1I7Z C7 C8 SING N N 8 A1I7Z C8 O19 DOUB N N 9 A1I7Z C8 N9 SING N N 10 A1I7Z N9 C10 SING N N 11 A1I7Z C10 C11 SING N N 12 A1I7Z C11 C12 SING N N 13 A1I7Z C12 C13 SING N N 14 A1I7Z C13 C14 SING N N 15 A1I7Z C14 N18 SING N N 16 A1I7Z C14 C15 SING N N 17 A1I7Z C15 O16 DOUB N N 18 A1I7Z C3 S20 SING N N 19 A1I7Z S20 S21 SING N N 20 A1I7Z C15 O1 SING N N 21 A1I7Z N18 C9 SING N N 22 A1I7Z C9 C16 SING N N 23 A1I7Z C16 C26 SING N N 24 A1I7Z C16 N29 SING N N 25 A1I7Z C9 O24 DOUB N N 26 A1I7Z C26 C27 SING N N 27 A1I7Z C27 O28 DOUB N N 28 A1I7Z C27 O29 SING N N 29 A1I7Z C1 H22 SING N N 30 A1I7Z C2 H21 SING N N 31 A1I7Z C2 H2 SING N N 32 A1I7Z C3 H3 SING N N 33 A1I7Z C3 H31 SING N N 34 A1I7Z C4 H4 SING N N 35 A1I7Z C4 H41 SING N N 36 A1I7Z C10 H101 SING N N 37 A1I7Z C10 H10 SING N N 38 A1I7Z C11 H11 SING N N 39 A1I7Z C11 H111 SING N N 40 A1I7Z C12 H121 SING N N 41 A1I7Z C12 H12 SING N N 42 A1I7Z C13 H13 SING N N 43 A1I7Z C13 H131 SING N N 44 A1I7Z C14 H14 SING N N 45 A1I7Z C16 H16 SING N N 46 A1I7Z C26 H261 SING N N 47 A1I7Z C26 H26 SING N N 48 A1I7Z C5 H5 SING N N 49 A1I7Z C5 H51 SING N N 50 A1I7Z C6 H61 SING N N 51 A1I7Z C6 H6 SING N N 52 A1I7Z C7 H7 SING N N 53 A1I7Z C7 H71 SING N N 54 A1I7Z N18 HN18 SING N N 55 A1I7Z N29 HN22 SING N N 56 A1I7Z N29 HN21 SING N N 57 A1I7Z N9 HN9 SING N N 58 A1I7Z O1 H1 SING N N 59 A1I7Z O29 H8 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I7Z InChI InChI 1.06 "InChI=1S/C18H31N3O6S2/c19-13(11-16(23)24)17(25)21-14(18(26)27)6-3-4-9-20-15(22)7-2-1-5-12-8-10-28-29-12/h12-14H,1-11,19H2,(H,20,22)(H,21,25)(H,23,24)(H,26,27)/t12-,13-,14+/m0/s1" A1I7Z InChIKey InChI 1.06 SIKSHIXDPSEBAE-MELADBBJSA-N A1I7Z SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CC(O)=O)C(=O)N[C@H](CCCCNC(=O)CCCC[C@H]1CCSS1)C(O)=O" A1I7Z SMILES CACTVS 3.385 "N[CH](CC(O)=O)C(=O)N[CH](CCCCNC(=O)CCCC[CH]1CCSS1)C(O)=O" A1I7Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CSS[C@H]1CCCCC(=O)NCCCC[C@H](C(=O)O)NC(=O)[C@H](CC(=O)O)N" A1I7Z SMILES "OpenEye OEToolkits" 2.0.7 "C1CSSC1CCCCC(=O)NCCCCC(C(=O)O)NC(=O)C(CC(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1I7Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[(2~{S})-2-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-6-[5-[(3~{S})-1,2-dithiolan-3-yl]pentanoylamino]hexanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1I7Z _pdbx_chem_comp_synonyms.name "(2~{R})-2-[[(2~{S})-2-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-6-[5-[(3~{S})-1,2-dithiolan-3-yl]pentanoylamino]hexanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I7Z "Create component" 2025-03-25 PDBE A1I7Z "Initial release" 2026-09-30 RCSB #