data_A1I9L # _chem_comp.id A1I9L _chem_comp.name "5-[2-[4-[[3-aminocarbonyl-5-(trifluoromethyloxy)phenyl]methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 F3 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-03 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 570.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QQX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I9L C4 C1 C 0 1 Y N N N N N -125.448 -183.492 311.770 8.442 -0.776 0.358 C4 A1I9L 1 A1I9L C5 C2 C 0 1 Y N N N N N -125.216 -183.669 310.391 7.975 0.480 -0.095 C5 A1I9L 2 A1I9L C6 C3 C 0 1 Y N N N N N -125.077 -184.980 309.877 8.837 1.584 -0.039 C6 A1I9L 3 A1I9L C7 C4 C 0 1 Y N N N N N -125.216 -181.362 309.980 5.866 -0.359 -0.657 C7 A1I9L 4 A1I9L C10 C5 C 0 1 Y N N N N N -125.947 -179.596 313.206 5.793 -4.013 0.151 C10 A1I9L 5 A1I9L C15 C6 C 0 1 N N N N N N -121.003 -179.825 307.828 0.521 0.856 -1.429 C15 A1I9L 6 A1I9L C17 C7 C 0 1 N N N N N N -118.715 -179.134 308.613 -1.810 0.472 -0.615 C17 A1I9L 7 A1I9L C21 C8 C 0 1 Y N N N N N -113.662 -178.857 311.342 -7.143 0.881 0.989 C21 A1I9L 8 A1I9L C22 C9 C 0 1 Y N N N N N -112.320 -179.196 311.263 -8.472 0.859 0.587 C22 A1I9L 9 A1I9L C26 C10 C 0 1 N N N N N N -111.213 -177.226 308.229 -8.863 -2.740 -0.428 C26 A1I9L 10 A1I9L C1 C11 C 0 1 Y N N N N N -125.122 -186.075 310.708 10.124 1.429 0.456 C1 A1I9L 11 A1I9L C2 C12 C 0 1 Y N N N N N -125.325 -185.888 312.074 10.568 0.176 0.900 C2 A1I9L 12 A1I9L C3 C13 C 0 1 Y N N N N N -125.493 -184.637 312.586 9.740 -0.905 0.857 C3 A1I9L 13 A1I9L C9 C14 C 0 1 Y N N N N N -125.695 -179.757 311.881 5.361 -2.795 -0.300 C9 A1I9L 14 A1I9L C11 C15 C 0 1 Y N N N N N -125.836 -181.842 313.620 7.886 -3.203 0.719 C11 A1I9L 15 A1I9L C14 C16 C 0 1 N N N N N N -123.167 -180.744 307.633 2.789 1.209 -2.121 C14 A1I9L 16 A1I9L C16 C17 C 0 1 N N N N N N -120.209 -178.863 308.676 -0.336 0.514 -0.208 C16 A1I9L 17 A1I9L C18 C18 C 0 1 N N N N N N -117.919 -178.316 309.612 -2.666 0.130 0.605 C18 A1I9L 18 A1I9L C19 C19 C 0 1 N N N N N N -115.700 -177.727 310.400 -4.936 -0.236 1.364 C19 A1I9L 19 A1I9L C23 C20 C 0 1 Y N N N N N -111.515 -178.703 310.248 -9.037 -0.317 0.124 C23 A1I9L 20 A1I9L C25 C21 C 0 1 Y N N N N N -113.422 -177.540 309.349 -6.932 -1.448 0.471 C25 A1I9L 21 A1I9L C27 C22 C 0 1 N N N N N N -110.797 -179.773 312.968 -10.578 1.899 0.217 C27 A1I9L 22 A1I9L F2 F1 F 0 1 N N N N N N -110.899 -180.342 314.155 -10.617 1.495 -1.121 F2 A1I9L 23 A1I9L F F2 F 0 1 N N N N N N -109.693 -180.233 312.410 -11.195 3.148 0.345 F A1I9L 24 A1I9L F1 F3 F 0 1 N N N N N N -110.651 -178.460 313.185 -11.253 0.962 1.007 F1 A1I9L 25 A1I9L O3 O1 O 0 1 N N N N N N -111.830 -180.114 312.193 -9.218 1.994 0.647 O3 A1I9L 26 A1I9L C24 C23 C 0 1 Y N N N N N -112.067 -177.857 309.293 -8.267 -1.479 0.064 C24 A1I9L 27 A1I9L N5 N1 N 0 1 N N N N N N -110.067 -177.816 307.925 -10.153 -2.767 -0.820 N5 A1I9L 28 A1I9L O2 O2 O 0 1 N N N N N N -111.598 -176.187 307.678 -8.191 -3.751 -0.479 O2 A1I9L 29 A1I9L C20 C24 C 0 1 Y N N N N N -114.225 -178.037 310.369 -6.378 -0.269 0.925 C20 A1I9L 30 A1I9L N4 N2 N 0 1 N N N N N N -116.484 -178.604 309.534 -4.082 0.090 0.214 N4 A1I9L 31 A1I9L O1 O3 O 0 1 N N N N N N -122.380 -179.663 308.117 1.898 0.896 -1.048 O1 A1I9L 32 A1I9L C13 C25 C 0 1 N N N N N N -124.624 -180.388 307.725 4.228 1.223 -1.602 C13 A1I9L 33 A1I9L N3 N3 N 0 1 N N N N N N -125.067 -180.271 309.107 4.603 -0.125 -1.167 N3 A1I9L 34 A1I9L C8 C26 C 0 1 Y N N N N N -125.498 -181.064 311.368 6.234 -1.707 -0.224 C8 A1I9L 35 A1I9L C12 C27 C 0 1 Y N N N N N -125.592 -182.152 312.266 7.533 -1.924 0.295 C12 A1I9L 36 A1I9L N2 N4 N 0 1 Y N N N N N -126.014 -180.607 314.088 7.013 -4.185 0.631 N2 A1I9L 37 A1I9L N1 N5 N 0 1 Y N N N N N -125.084 -182.614 309.517 6.727 0.626 -0.574 N1 A1I9L 38 A1I9L C C28 C 0 1 N N N N N N -124.909 -187.463 310.165 11.033 2.594 0.514 C A1I9L 39 A1I9L O O4 O 0 1 N N N N N N -124.336 -188.319 310.881 10.652 3.682 0.129 O A1I9L 40 A1I9L N N6 N 0 1 N N N N N N -125.232 -187.686 308.893 12.284 2.448 0.994 N A1I9L 41 A1I9L H1 H1 H 0 1 N N N N N N -124.933 -185.123 308.816 8.500 2.552 -0.380 H1 A1I9L 42 A1I9L H2 H2 H 0 1 N N N N N N -126.103 -178.592 313.573 5.123 -4.858 0.104 H2 A1I9L 43 A1I9L H3 H3 H 0 1 N N N N N N -120.697 -180.857 308.055 0.378 0.097 -2.197 H3 A1I9L 44 A1I9L H4 H4 H 0 1 N N N N N N -120.822 -179.615 306.764 0.224 1.830 -1.820 H4 A1I9L 45 A1I9L H5 H5 H 0 1 N N N N N N -118.544 -180.201 308.819 -2.107 1.446 -1.006 H5 A1I9L 46 A1I9L H6 H6 H 0 1 N N N N N N -118.358 -178.894 307.601 -1.953 -0.287 -1.384 H6 A1I9L 47 A1I9L H7 H7 H 0 1 N N N N N N -114.268 -179.228 312.155 -6.705 1.800 1.349 H7 A1I9L 48 A1I9L H8 H8 H 0 1 N N N N N N -125.349 -186.743 312.733 11.572 0.068 1.283 H8 A1I9L 49 A1I9L H9 H9 H 0 1 N N N N N N -125.665 -184.521 313.646 10.089 -1.866 1.206 H9 A1I9L 50 A1I9L H10 H10 H 0 1 N N N N N N -125.645 -178.900 311.226 4.361 -2.673 -0.689 H10 A1I9L 51 A1I9L H11 H11 H 0 1 N N N N N N -125.882 -182.660 314.324 8.873 -3.388 1.117 H11 A1I9L 52 A1I9L H12 H12 H 0 1 N N N N N N -122.970 -181.640 308.240 2.693 0.456 -2.905 H12 A1I9L 53 A1I9L H13 H13 H 0 1 N N N N N N -122.905 -180.946 306.584 2.539 2.189 -2.526 H13 A1I9L 54 A1I9L H14 H14 H 0 1 N N N N N N -120.398 -177.839 308.320 -0.039 -0.459 0.183 H14 A1I9L 55 A1I9L H15 H15 H 0 1 N N N N N N -120.541 -178.955 309.721 -0.192 1.273 0.561 H15 A1I9L 56 A1I9L H16 H16 H 0 1 N N N N N N -118.079 -177.248 309.405 -2.370 -0.843 0.996 H16 A1I9L 57 A1I9L H17 H17 H 0 1 N N N N N N -118.274 -178.550 310.626 -2.523 0.890 1.374 H17 A1I9L 58 A1I9L H18 H18 H 0 1 N N N N N N -115.847 -176.687 310.072 -4.809 0.520 2.138 H18 A1I9L 59 A1I9L H19 H19 H 0 1 N N N N N N -116.061 -177.840 311.433 -4.655 -1.212 1.760 H19 A1I9L 60 A1I9L H20 H20 H 0 1 N N N N N N -110.470 -178.973 310.200 -10.071 -0.335 -0.189 H20 A1I9L 61 A1I9L H21 H21 H 0 1 N N N N N N -113.853 -176.901 308.592 -6.334 -2.346 0.431 H21 A1I9L 62 A1I9L H22 H22 H 0 1 N N N N N N -109.473 -177.422 307.224 -10.689 -1.960 -0.779 H22 A1I9L 63 A1I9L H23 H23 H 0 1 N N N N N N -109.796 -178.655 308.397 -10.544 -3.594 -1.143 H23 A1I9L 64 A1I9L H24 H24 H 0 1 N N N N N N -116.330 -179.552 309.811 -4.365 0.960 -0.211 H24 A1I9L 65 A1I9L H26 H26 H 0 1 N N N N N N -124.788 -179.427 307.216 4.898 1.548 -2.398 H26 A1I9L 66 A1I9L H27 H27 H 0 1 N N N N N N -125.214 -181.172 307.227 4.303 1.911 -0.760 H27 A1I9L 67 A1I9L H28 H28 H 0 1 N N N N N N -124.414 -179.657 309.550 3.966 -0.853 -1.237 H28 A1I9L 68 A1I9L H29 H29 H 0 1 N N N N N N -125.018 -188.566 308.470 12.588 1.580 1.301 H29 A1I9L 69 A1I9L H30 H30 H 0 1 N N N N N N -125.688 -186.973 308.361 12.880 3.212 1.032 H30 A1I9L 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I9L C14 C13 SING N N 1 A1I9L C14 O1 SING N N 2 A1I9L O2 C26 DOUB N N 3 A1I9L C13 N3 SING N N 4 A1I9L C15 O1 SING N N 5 A1I9L C15 C16 SING N N 6 A1I9L N5 C26 SING N N 7 A1I9L C26 C24 SING N N 8 A1I9L C17 C16 SING N N 9 A1I9L C17 C18 SING N N 10 A1I9L N C SING N N 11 A1I9L N3 C7 SING N N 12 A1I9L C24 C25 DOUB Y N 13 A1I9L C24 C23 SING Y N 14 A1I9L C25 C20 SING Y N 15 A1I9L N1 C7 DOUB Y N 16 A1I9L N1 C5 SING Y N 17 A1I9L N4 C18 SING N N 18 A1I9L N4 C19 SING N N 19 A1I9L C6 C5 SING Y N 20 A1I9L C6 C1 DOUB Y N 21 A1I9L C7 C8 SING Y N 22 A1I9L C C1 SING N N 23 A1I9L C O DOUB N N 24 A1I9L C23 C22 DOUB Y N 25 A1I9L C20 C19 SING N N 26 A1I9L C20 C21 DOUB Y N 27 A1I9L C5 C4 DOUB Y N 28 A1I9L C1 C2 SING Y N 29 A1I9L C22 C21 SING Y N 30 A1I9L C22 O3 SING N N 31 A1I9L C8 C9 DOUB Y N 32 A1I9L C8 C12 SING Y N 33 A1I9L C4 C12 SING Y N 34 A1I9L C4 C3 SING Y N 35 A1I9L C9 C10 SING Y N 36 A1I9L C2 C3 DOUB Y N 37 A1I9L O3 C27 SING N N 38 A1I9L C12 C11 DOUB Y N 39 A1I9L F C27 SING N N 40 A1I9L C27 F1 SING N N 41 A1I9L C27 F2 SING N N 42 A1I9L C10 N2 DOUB Y N 43 A1I9L C11 N2 SING Y N 44 A1I9L C6 H1 SING N N 45 A1I9L C10 H2 SING N N 46 A1I9L C15 H3 SING N N 47 A1I9L C15 H4 SING N N 48 A1I9L C17 H5 SING N N 49 A1I9L C17 H6 SING N N 50 A1I9L C21 H7 SING N N 51 A1I9L C2 H8 SING N N 52 A1I9L C3 H9 SING N N 53 A1I9L C9 H10 SING N N 54 A1I9L C11 H11 SING N N 55 A1I9L C14 H12 SING N N 56 A1I9L C14 H13 SING N N 57 A1I9L C16 H14 SING N N 58 A1I9L C16 H15 SING N N 59 A1I9L C18 H16 SING N N 60 A1I9L C18 H17 SING N N 61 A1I9L C19 H18 SING N N 62 A1I9L C19 H19 SING N N 63 A1I9L C23 H20 SING N N 64 A1I9L C25 H21 SING N N 65 A1I9L N5 H22 SING N N 66 A1I9L N5 H23 SING N N 67 A1I9L N4 H24 SING N N 68 A1I9L C13 H26 SING N N 69 A1I9L C13 H27 SING N N 70 A1I9L N3 H28 SING N N 71 A1I9L N H29 SING N N 72 A1I9L N H30 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I9L InChI InChI 1.06 "InChI=1S/C28H29F3N6O4/c29-28(30,31)41-20-12-17(11-19(13-20)26(33)39)15-34-6-1-2-9-40-10-8-36-27-22-5-7-35-16-23(22)21-4-3-18(25(32)38)14-24(21)37-27/h3-5,7,11-14,16,34H,1-2,6,8-10,15H2,(H2,32,38)(H2,33,39)(H,36,37)" A1I9L InChIKey InChI 1.06 BYUOTROFDJYVHI-UHFFFAOYSA-N A1I9L SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3cc(OC(F)(F)F)cc(c3)C(N)=O)c4ccncc24" A1I9L SMILES CACTVS 3.385 "NC(=O)c1ccc2c(c1)nc(NCCOCCCCNCc3cc(OC(F)(F)F)cc(c3)C(N)=O)c4ccncc24" A1I9L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N)nc(c3c2cncc3)NCCOCCCCNCc4cc(cc(c4)OC(F)(F)F)C(=O)N" A1I9L SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N)nc(c3c2cncc3)NCCOCCCCNCc4cc(cc(c4)OC(F)(F)F)C(=O)N" # _pdbx_chem_comp_identifier.comp_id A1I9L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[2-[4-[[3-aminocarbonyl-5-(trifluoromethyloxy)phenyl]methylamino]butoxy]ethylamino]benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I9L "Create component" 2025-04-03 PDBE A1I9L "Initial release" 2025-10-22 RCSB #