data_A1I9R # _chem_comp.id A1I9R _chem_comp.name "methyl (2R)-2-[4,5,13-trimethyl-7-[4-(propanoylamino)phenyl]-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]butanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl (R)-2-((S)-2,3,9-trimethyl-4-(4-propionamidophenyl)-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl)butanoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-03 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1I9R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QRK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1I9R C4 C1 C 0 1 Y N N N N N 17.510 -4.673 13.644 -4.017 -0.613 0.968 C4 A1I9R 1 A1I9R C14 C2 C 0 1 N N N N N N 19.489 -11.192 9.181 1.178 -4.397 -1.752 C14 A1I9R 2 A1I9R C5 C3 C 0 1 Y N N N N N 17.309 -3.636 12.734 -3.209 -1.734 1.124 C5 A1I9R 3 A1I9R C6 C4 C 0 1 Y N N N N N 17.448 -3.891 11.383 -1.840 -1.617 1.023 C6 A1I9R 4 A1I9R C11 C5 C 0 1 N N N N N N 17.277 -9.115 6.376 4.337 -1.579 -0.056 C11 A1I9R 5 A1I9R C7 C6 C 0 1 Y N N N N N 17.766 -5.142 10.912 -1.265 -0.372 0.763 C7 A1I9R 6 A1I9R C8 C7 C 0 1 N N N N N N 17.811 -5.404 9.463 0.206 -0.243 0.654 C8 A1I9R 7 A1I9R C9 C8 C 0 1 N N R N N N 17.375 -7.031 7.826 2.383 -1.000 1.390 C9 A1I9R 8 A1I9R C10 C9 C 0 1 N N R N N N 17.244 -8.561 7.792 2.812 -1.462 -0.004 C10 A1I9R 9 A1I9R C12 C10 C 0 1 N N N N N N 18.472 -8.692 5.573 4.774 -1.920 -1.482 C12 A1I9R 10 A1I9R C13 C11 C 0 1 N N N N N N 18.406 -9.165 8.581 2.195 -2.805 -0.300 C13 A1I9R 11 A1I9R N1 N1 N 0 1 N N N N N N 17.373 -4.479 15.036 -5.404 -0.735 1.071 N1 A1I9R 12 A1I9R N2 N2 N 0 1 N N N N N N 17.221 -6.521 9.180 0.921 -0.956 1.463 N2 A1I9R 13 A1I9R C3 C12 C 0 1 N N N N N N 17.246 -3.321 15.718 -6.207 0.070 0.346 C3 A1I9R 14 A1I9R N3 N3 N 0 1 Y N N N N N 15.256 -6.712 6.500 3.744 0.744 2.606 N3 A1I9R 15 A1I9R C1 C13 C 0 1 N N N N N N 15.493 -3.505 17.385 -8.372 1.024 -0.396 C1 A1I9R 16 A1I9R C2 C14 C 0 1 N N N N N N 16.931 -3.512 17.177 -7.700 0.019 0.542 C2 A1I9R 17 A1I9R O1 O1 O 0 1 N N N N N N 17.397 -2.211 15.228 -5.727 0.834 -0.465 O1 A1I9R 18 A1I9R O2 O2 O 0 1 N N N N N N 19.259 -8.496 9.122 2.046 -3.611 0.589 O2 A1I9R 19 A1I9R O3 O3 O 0 1 N N N N N N 18.373 -10.509 8.528 1.811 -3.106 -1.550 O3 A1I9R 20 A1I9R C15 C15 C 0 1 Y N N N N N 16.379 -6.296 6.988 2.932 0.377 1.656 C15 A1I9R 21 A1I9R N4 N4 N 0 1 Y N N N N N 14.666 -5.592 5.892 3.975 2.008 2.515 N4 A1I9R 22 A1I9R C16 C16 C 0 1 Y N N N N N 15.437 -4.568 6.067 3.322 2.510 1.498 C16 A1I9R 23 A1I9R C17 C17 C 0 1 N N N N N N 15.190 -3.202 5.571 3.319 3.950 1.053 C17 A1I9R 24 A1I9R N5 N5 N 0 1 Y N N N N N 16.541 -4.963 6.788 2.649 1.485 0.922 N5 A1I9R 25 A1I9R C18 C18 C 0 1 Y N N N N N 17.636 -4.228 7.264 1.827 1.496 -0.214 C18 A1I9R 26 A1I9R S1 S1 S 0 1 Y N N N N N 18.383 -3.018 6.297 2.048 2.504 -1.572 S1 A1I9R 27 A1I9R C19 C19 C 0 1 Y N N N N N 19.585 -2.738 7.515 0.683 1.802 -2.417 C19 A1I9R 28 A1I9R C20 C20 C 0 1 N N N N N N 20.690 -1.736 7.300 0.234 2.200 -3.800 C20 A1I9R 29 A1I9R C21 C21 C 0 1 Y N N N N N 19.430 -3.541 8.578 0.098 0.872 -1.670 C21 A1I9R 30 A1I9R C22 C22 C 0 1 N N N N N N 20.406 -3.520 9.716 -1.102 0.084 -2.129 C22 A1I9R 31 A1I9R C23 C23 C 0 1 Y N N N N N 18.267 -4.408 8.506 0.724 0.683 -0.373 C23 A1I9R 32 A1I9R C24 C24 C 0 1 Y N N N N N 17.930 -6.173 11.831 -2.078 0.751 0.607 C24 A1I9R 33 A1I9R C25 C25 C 0 1 Y N N N N N 17.831 -5.937 13.185 -3.446 0.629 0.714 C25 A1I9R 34 A1I9R H17 H1 H 0 1 N N N N N N 19.364 -12.280 9.079 0.239 -4.432 -1.199 H17 A1I9R 35 A1I9R H18 H2 H 0 1 N N N N N N 20.434 -10.886 8.708 0.979 -4.543 -2.814 H18 A1I9R 36 A1I9R H16 H3 H 0 1 N N N N N N 19.509 -10.924 10.248 1.839 -5.187 -1.395 H16 A1I9R 37 A1I9R H7 H4 H 0 1 N N N N N N 17.048 -2.647 13.080 -3.655 -2.697 1.326 H7 A1I9R 38 A1I9R H8 H5 H 0 1 N N N N N N 17.303 -3.085 10.678 -1.212 -2.487 1.145 H8 A1I9R 39 A1I9R H12 H6 H 0 1 N N N N N N 16.372 -8.774 5.852 4.784 -0.632 0.245 H12 A1I9R 40 A1I9R H11 H7 H 0 1 N N N N N N 17.274 -10.213 6.436 4.664 -2.367 0.623 H11 A1I9R 41 A1I9R H10 H10 H 0 1 N N N N N N 16.297 -8.849 8.271 2.478 -0.738 -0.746 H10 A1I9R 42 A1I9R H14 H11 H 0 1 N N N N N N 18.415 -9.136 4.568 4.446 -1.133 -2.160 H14 A1I9R 43 A1I9R H15 H12 H 0 1 N N N N N N 18.488 -7.595 5.489 5.860 -2.004 -1.519 H15 A1I9R 44 A1I9R H13 H13 H 0 1 N N N N N N 19.390 -9.035 6.073 4.326 -2.868 -1.782 H13 A1I9R 45 A1I9R H6 H14 H 0 1 N N N N N N 17.370 -5.311 15.591 -5.790 -1.398 1.664 H6 A1I9R 46 A1I9R H2 H17 H 0 1 N N N N N N 15.276 -3.645 18.454 -9.452 0.988 -0.254 H2 A1I9R 47 A1I9R H32 H18 H 0 1 N N N N N N 15.079 -2.543 17.050 -8.010 2.028 -0.173 H32 A1I9R 48 A1I9R H1 H19 H 0 1 N N N N N N 15.035 -4.322 16.808 -8.133 0.773 -1.429 H1 A1I9R 49 A1I9R H5 H20 H 0 1 N N N N N N 17.342 -4.475 17.514 -8.062 -0.984 0.319 H5 A1I9R 50 A1I9R H4 H21 H 0 1 N N N N N N 17.386 -2.695 17.757 -7.939 0.271 1.576 H4 A1I9R 51 A1I9R H20 H22 H 0 1 N N N N N N 14.238 -3.178 5.020 4.125 4.110 0.337 H20 A1I9R 52 A1I9R H21 H23 H 0 1 N N N N N N 15.139 -2.507 6.422 2.364 4.184 0.584 H21 A1I9R 53 A1I9R H19 H24 H 0 1 N N N N N N 16.009 -2.902 4.901 3.468 4.597 1.918 H19 A1I9R 54 A1I9R H23 H25 H 0 1 N N N N N N 20.578 -1.273 6.309 0.886 2.984 -4.182 H23 A1I9R 55 A1I9R H24 H26 H 0 1 N N N N N N 20.636 -0.959 8.076 0.280 1.334 -4.460 H24 A1I9R 56 A1I9R H22 H27 H 0 1 N N N N N N 21.663 -2.245 7.358 -0.791 2.569 -3.757 H22 A1I9R 57 A1I9R H26 H28 H 0 1 N N N N N N 20.078 -2.786 10.467 -0.773 -0.868 -2.548 H26 A1I9R 58 A1I9R H27 H29 H 0 1 N N N N N N 20.455 -4.518 10.175 -1.761 -0.101 -1.281 H27 A1I9R 59 A1I9R H25 H30 H 0 1 N N N N N N 21.401 -3.240 9.340 -1.638 0.650 -2.891 H25 A1I9R 60 A1I9R H28 H31 H 0 1 N N N N N N 18.138 -7.172 11.478 -1.636 1.715 0.406 H28 A1I9R 61 A1I9R H29 H32 H 0 1 N N N N N N 18.004 -6.739 13.887 -4.076 1.498 0.593 H29 A1I9R 62 A1I9R H3 H29 H 0 1 N N N N N N 18.382 -6.774 7.466 2.765 -1.695 2.138 H3 A1I9R 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1I9R C17 C16 SING N N 1 A1I9R C12 C11 SING N N 2 A1I9R N4 C16 DOUB Y N 3 A1I9R N4 N3 SING Y N 4 A1I9R C16 N5 SING Y N 5 A1I9R S1 C18 SING Y N 6 A1I9R S1 C19 SING Y N 7 A1I9R C11 C10 SING N N 8 A1I9R N3 C15 DOUB Y N 9 A1I9R N5 C15 SING Y N 10 A1I9R N5 C18 SING N N 11 A1I9R C15 C9 SING N N 12 A1I9R C18 C23 DOUB Y N 13 A1I9R C20 C19 SING N N 14 A1I9R C19 C21 DOUB Y N 15 A1I9R C10 C9 SING N N 16 A1I9R C10 C13 SING N N 17 A1I9R C9 N2 SING N N 18 A1I9R C23 C21 SING Y N 19 A1I9R C23 C8 SING N N 20 A1I9R O3 C13 SING N N 21 A1I9R O3 C14 SING N N 22 A1I9R C21 C22 SING N N 23 A1I9R C13 O2 DOUB N N 24 A1I9R N2 C8 DOUB N N 25 A1I9R C8 C7 SING N N 26 A1I9R C7 C6 DOUB Y N 27 A1I9R C7 C24 SING Y N 28 A1I9R C6 C5 SING Y N 29 A1I9R C24 C25 DOUB Y N 30 A1I9R C5 C4 DOUB Y N 31 A1I9R C25 C4 SING Y N 32 A1I9R C4 N1 SING N N 33 A1I9R N1 C3 SING N N 34 A1I9R O1 C3 DOUB N N 35 A1I9R C3 C2 SING N N 36 A1I9R C2 C1 SING N N 37 A1I9R C14 H17 SING N N 38 A1I9R C14 H18 SING N N 39 A1I9R C14 H16 SING N N 40 A1I9R C5 H7 SING N N 41 A1I9R C6 H8 SING N N 42 A1I9R C11 H12 SING N N 43 A1I9R C11 H11 SING N N 44 A1I9R C10 H10 SING N N 45 A1I9R C12 H14 SING N N 46 A1I9R C12 H15 SING N N 47 A1I9R C12 H13 SING N N 48 A1I9R N1 H6 SING N N 49 A1I9R C1 H2 SING N N 50 A1I9R C1 H32 SING N N 51 A1I9R C1 H1 SING N N 52 A1I9R C2 H5 SING N N 53 A1I9R C2 H4 SING N N 54 A1I9R C17 H20 SING N N 55 A1I9R C17 H21 SING N N 56 A1I9R C17 H19 SING N N 57 A1I9R C20 H23 SING N N 58 A1I9R C20 H24 SING N N 59 A1I9R C20 H22 SING N N 60 A1I9R C22 H26 SING N N 61 A1I9R C22 H27 SING N N 62 A1I9R C22 H25 SING N N 63 A1I9R C24 H28 SING N N 64 A1I9R C25 H29 SING N N 65 A1I9R C9 H3 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1I9R InChI InChI 1.06 "InChI=1S/C25H29N5O3S/c1-7-18(25(32)33-6)22-23-29-28-15(5)30(23)24-20(13(3)14(4)34-24)21(27-22)16-9-11-17(12-10-16)26-19(31)8-2/h9-12,18,22H,7-8H2,1-6H3,(H,26,31)/t18-,22-/m1/s1" A1I9R InChIKey InChI 1.06 RAVLEGIYYNDFAK-XMSQKQJNSA-N A1I9R SMILES_CANONICAL CACTVS 3.385 "CC[C@H]([C@H]1N=C(c2ccc(NC(=O)CC)cc2)c3c(C)c(C)sc3n4c(C)nnc14)C(=O)OC" A1I9R SMILES CACTVS 3.385 "CC[CH]([CH]1N=C(c2ccc(NC(=O)CC)cc2)c3c(C)c(C)sc3n4c(C)nnc14)C(=O)OC" A1I9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C1c2nnc(n2-c3c(c(c(s3)C)C)C(=N1)c4ccc(cc4)NC(=O)CC)C)C(=O)OC" A1I9R SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C1c2nnc(n2-c3c(c(c(s3)C)C)C(=N1)c4ccc(cc4)NC(=O)CC)C)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id A1I9R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (2~{R})-2-[4,5,13-trimethyl-7-[4-(propanoylamino)phenyl]-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1I9R "Create component" 2025-04-03 PDBE A1I9R "Modify aromatic_flag" 2025-05-15 PDBE A1I9R "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1I9R _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #