data_A1IA7 # _chem_comp.id A1IA7 _chem_comp.name "5-oxidanyl-6-oxidanylidene-2-(4-phenylphenyl)-1H-pyrimidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H12 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-10 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.288 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IA7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F9K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IA7 C1 C1 C 0 1 Y N N N N N 0.724 29.071 15.828 6.522 0.917 0.004 C1 A1IA7 1 A1IA7 C2 C2 C 0 1 Y N N N N N 0.763 28.209 14.746 5.148 1.051 0.005 C2 A1IA7 2 A1IA7 C3 C3 C 0 1 Y N N N N N 1.963 27.629 14.339 4.340 -0.085 0.003 C3 A1IA7 3 A1IA7 C7 C4 C 0 1 Y N N N N N 0.847 26.122 12.675 2.058 -1.086 0.001 C7 A1IA7 4 A1IA7 C8 C5 C 0 1 Y N N N N N 0.887 25.263 11.591 0.687 -0.960 0.002 C8 A1IA7 5 A1IA7 C9 C6 C 0 1 Y N N N N N 2.097 24.960 10.971 0.103 0.310 -0.001 C9 A1IA7 6 A1IA7 C10 C7 C 0 1 Y N N N N N 3.262 25.539 11.470 0.911 1.449 -0.004 C10 A1IA7 7 A1IA7 C11 C8 C 0 1 Y N N N N N 3.216 26.397 12.553 2.282 1.320 -0.005 C11 A1IA7 8 A1IA7 C12 C9 C 0 1 N N N N N N 2.151 24.040 9.816 -1.368 0.447 -0.000 C12 A1IA7 9 A1IA7 C13 C10 C 0 1 N N N N N N 3.614 22.712 8.383 -3.255 1.850 -0.003 C13 A1IA7 10 A1IA7 C14 C11 C 0 1 N N N N N N 2.398 22.328 7.699 -4.087 0.641 0.000 C14 A1IA7 11 A1IA7 C15 C12 C 0 1 N N N N N N 1.205 22.819 8.125 -3.445 -0.590 -0.003 C15 A1IA7 12 A1IA7 C16 C13 C 0 1 N N N N N N -0.017 22.387 7.375 -4.234 -1.841 -0.001 C16 A1IA7 13 A1IA7 O1 O1 O 0 1 N N N N N N -0.198 21.200 7.062 -5.448 -1.793 0.004 O1 A1IA7 14 A1IA7 O2 O2 O 0 1 N N N N N N -0.865 23.354 7.078 -3.607 -3.033 -0.004 O2 A1IA7 15 A1IA7 O3 O3 O 0 1 N N N N N N 2.507 21.486 6.655 -5.441 0.723 0.006 O3 A1IA7 16 A1IA7 O O4 O 0 1 N N N N N N 4.752 22.339 8.100 -3.761 2.959 0.000 O A1IA7 17 A1IA7 N N1 N 0 1 N N N N N N 3.402 23.574 9.437 -1.913 1.698 -0.003 N A1IA7 18 A1IA7 N1 N2 N 0 1 N N N N N N 1.031 23.692 9.195 -2.104 -0.638 -0.002 N1 A1IA7 19 A1IA7 C6 C14 C 0 1 Y N N N N N 2.010 26.706 13.179 2.864 0.052 0.004 C6 A1IA7 20 A1IA7 C4 C15 C 0 1 Y N N N N N 3.118 27.943 15.051 4.925 -1.350 -0.000 C4 A1IA7 21 A1IA7 C5 C16 C 0 1 Y N N N N N 3.071 28.805 16.132 6.299 -1.472 -0.001 C5 A1IA7 22 A1IA7 C C17 C 0 1 Y N N N N N 1.876 29.369 16.519 7.097 -0.342 -0.005 C A1IA7 23 A1IA7 H2 H1 H 0 1 N N N N N N -0.214 29.512 16.131 7.149 1.796 0.006 H2 A1IA7 24 A1IA7 H3 H2 H 0 1 N N N N N N -0.147 27.983 14.211 4.701 2.034 0.008 H3 A1IA7 25 A1IA7 H6 H3 H 0 1 N N N N N N -0.102 26.345 13.140 2.509 -2.067 0.004 H6 A1IA7 26 A1IA7 H7 H4 H 0 1 N N N N N N -0.028 24.824 11.222 0.063 -1.841 0.005 H7 A1IA7 27 A1IA7 H8 H5 H 0 1 N N N N N N 4.211 25.315 11.006 0.461 2.431 -0.007 H8 A1IA7 28 A1IA7 H9 H6 H 0 1 N N N N N N 4.132 26.836 12.921 2.907 2.201 -0.008 H9 A1IA7 29 A1IA7 H10 H7 H 0 1 N N N N N N -1.604 22.993 6.603 -4.165 -3.823 -0.002 H10 A1IA7 30 A1IA7 H11 H8 H 0 1 N N N N N N 1.654 21.121 6.452 -5.780 1.629 0.008 H11 A1IA7 31 A1IA7 H H9 H 0 1 N N N N N N 4.197 23.882 9.960 -1.336 2.478 -0.005 H A1IA7 32 A1IA7 H4 H10 H 0 1 N N N N N N 4.062 27.508 14.756 4.303 -2.234 -0.001 H4 A1IA7 33 A1IA7 H5 H11 H 0 1 N N N N N N 3.976 29.037 16.675 6.754 -2.452 -0.003 H5 A1IA7 34 A1IA7 H1 H12 H 0 1 N N N N N N 1.843 30.043 17.362 8.172 -0.442 -0.005 H1 A1IA7 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IA7 C C1 DOUB Y N 1 A1IA7 C1 C2 SING Y N 2 A1IA7 C2 C3 DOUB Y N 3 A1IA7 C4 C3 SING Y N 4 A1IA7 C5 C4 DOUB Y N 5 A1IA7 C C5 SING Y N 6 A1IA7 C3 C6 SING N N 7 A1IA7 C6 C7 DOUB Y N 8 A1IA7 C7 C8 SING Y N 9 A1IA7 C8 C9 DOUB Y N 10 A1IA7 C10 C9 SING Y N 11 A1IA7 C11 C10 DOUB Y N 12 A1IA7 C6 C11 SING Y N 13 A1IA7 C9 C12 SING N N 14 A1IA7 C12 N SING N N 15 A1IA7 N C13 SING N N 16 A1IA7 O C13 DOUB N N 17 A1IA7 C13 C14 SING N N 18 A1IA7 C14 C15 DOUB N N 19 A1IA7 N1 C15 SING N N 20 A1IA7 C12 N1 DOUB N N 21 A1IA7 C15 C16 SING N N 22 A1IA7 C16 O1 DOUB N N 23 A1IA7 O2 C16 SING N N 24 A1IA7 O3 C14 SING N N 25 A1IA7 C1 H2 SING N N 26 A1IA7 C2 H3 SING N N 27 A1IA7 C7 H6 SING N N 28 A1IA7 C8 H7 SING N N 29 A1IA7 C10 H8 SING N N 30 A1IA7 C11 H9 SING N N 31 A1IA7 O2 H10 SING N N 32 A1IA7 O3 H11 SING N N 33 A1IA7 N H SING N N 34 A1IA7 C4 H4 SING N N 35 A1IA7 C5 H5 SING N N 36 A1IA7 C H1 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IA7 InChI InChI 1.06 "InChI=1S/C17H12N2O4/c20-14-13(17(22)23)18-15(19-16(14)21)12-8-6-11(7-9-12)10-4-2-1-3-5-10/h1-9,20H,(H,22,23)(H,18,19,21)" A1IA7 InChIKey InChI 1.06 WBTZMLOTPWUTHO-UHFFFAOYSA-N A1IA7 SMILES_CANONICAL CACTVS 3.385 "OC(=O)C1=C(O)C(=O)NC(=N1)c2ccc(cc2)c3ccccc3" A1IA7 SMILES CACTVS 3.385 "OC(=O)C1=C(O)C(=O)NC(=N1)c2ccc(cc2)c3ccccc3" A1IA7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C3=NC(=C(C(=O)N3)O)C(=O)O" A1IA7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C3=NC(=C(C(=O)N3)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IA7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-oxidanyl-6-oxidanylidene-2-(4-phenylphenyl)-1~{H}-pyrimidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IA7 "Create component" 2024-05-10 PDBE A1IA7 "Initial release" 2024-07-03 RCSB #