data_A1IA8 # _chem_comp.id A1IA8 _chem_comp.name "2-[2-[4-(cyanomethyl)phenyl]phenyl]-5-oxidanyl-6-oxidanylidene-1H-pyrimidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H13 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-10 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IA8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F9L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IA8 C1 C1 C 0 1 N N N N N N -2.398 -7.669 38.620 -2.773 -0.839 0.274 C1 A1IA8 1 A1IA8 C2 C2 C 0 1 N N N N N N -3.551 -8.100 39.195 -2.339 -1.706 -0.719 C2 A1IA8 2 A1IA8 C3 C3 C 0 1 N N N N N N -4.801 -7.921 38.498 -1.258 -1.253 -1.603 C3 A1IA8 3 A1IA8 C7 C4 C 0 1 Y N N N N N -4.510 -4.642 33.965 -0.944 4.489 -0.002 C7 A1IA8 4 A1IA8 C8 C5 C 0 1 Y N N N N N -3.594 -4.936 32.986 0.420 4.641 0.184 C8 A1IA8 5 A1IA8 C9 C6 C 0 1 Y N N N N N -2.610 -5.884 33.209 1.253 3.539 0.181 C9 A1IA8 6 A1IA8 C10 C7 C 0 1 Y N N N N N -2.529 -6.558 34.430 0.724 2.266 -0.011 C10 A1IA8 7 A1IA8 C11 C8 C 0 1 Y N N N N N -1.445 -7.569 34.597 1.614 1.082 -0.015 C11 A1IA8 8 A1IA8 C12 C9 C 0 1 Y N N N N N -0.131 -7.276 34.243 2.697 1.023 -0.891 C12 A1IA8 9 A1IA8 C13 C10 C 0 1 Y N N N N N 0.873 -8.215 34.392 3.523 -0.082 -0.889 C13 A1IA8 10 A1IA8 C14 C11 C 0 1 Y N N N N N 0.600 -9.477 34.897 3.278 -1.131 -0.021 C14 A1IA8 11 A1IA8 C15 C12 C 0 1 N N N N N N 1.699 -10.510 35.061 4.183 -2.336 -0.025 C15 A1IA8 12 A1IA8 C16 C13 C 0 1 N N N N N N 1.354 -11.813 34.498 5.284 -2.125 0.930 C16 A1IA8 13 A1IA8 N2 N1 N 0 1 N N N N N N 1.063 -12.816 34.058 6.133 -1.962 1.667 N2 A1IA8 14 A1IA8 C17 C14 C 0 1 Y N N N N N -0.709 -9.777 35.248 2.205 -1.079 0.850 C17 A1IA8 15 A1IA8 C18 C15 C 0 1 Y N N N N N -1.715 -8.841 35.099 1.375 0.024 0.862 C18 A1IA8 16 A1IA8 C6 C16 C 0 1 Y N N N N N -4.459 -5.293 35.187 -1.488 3.235 -0.188 C6 A1IA8 17 A1IA8 C5 C17 C 0 1 Y N N N N N -3.475 -6.253 35.427 -0.662 2.111 -0.200 C5 A1IA8 18 A1IA8 C4 C18 C 0 1 N N N N N N -3.470 -6.904 36.750 -1.238 0.767 -0.398 C4 A1IA8 19 A1IA8 N N2 N 0 1 N N N N N N -4.673 -7.311 37.277 -0.748 -0.018 -1.401 N A1IA8 20 A1IA8 O3 O1 O 0 1 N N N N N N -5.905 -8.265 38.909 -0.834 -1.969 -2.493 O3 A1IA8 21 A1IA8 O2 O2 O 0 1 N N N N N N -3.625 -8.692 40.395 -2.895 -2.934 -0.867 O2 A1IA8 22 A1IA8 N1 N3 N 0 1 N N N N N N -2.323 -7.054 37.378 -2.203 0.369 0.395 N1 A1IA8 23 A1IA8 C C19 C 0 1 N N N N N N -1.059 -7.826 39.278 -3.864 -1.243 1.189 C A1IA8 24 A1IA8 O1 O3 O 0 1 N N N N N N -0.954 -8.218 40.440 -4.444 -2.295 1.016 O1 A1IA8 25 A1IA8 O O4 O 0 1 N N N N N N 0.007 -7.521 38.533 -4.213 -0.442 2.215 O A1IA8 26 A1IA8 H4 H1 H 0 1 N N N N N N -5.273 -3.900 33.782 -1.586 5.357 0.002 H4 A1IA8 27 A1IA8 H5 H2 H 0 1 N N N N N N -3.641 -4.425 32.036 0.835 5.627 0.332 H5 A1IA8 28 A1IA8 H6 H3 H 0 1 N N N N N N -1.896 -6.105 32.429 2.316 3.666 0.326 H6 A1IA8 29 A1IA8 H7 H4 H 0 1 N N N N N N 0.108 -6.300 33.846 2.889 1.841 -1.569 H7 A1IA8 30 A1IA8 H8 H5 H 0 1 N N N N N N 1.885 -7.962 34.111 4.362 -0.129 -1.567 H8 A1IA8 31 A1IA8 H10 H6 H 0 1 N N N N N N 2.604 -10.140 34.557 3.615 -3.219 0.266 H10 A1IA8 32 A1IA8 H9 H7 H 0 1 N N N N N N 1.903 -10.636 36.135 4.593 -2.480 -1.025 H9 A1IA8 33 A1IA8 H11 H8 H 0 1 N N N N N N -0.944 -10.754 35.643 2.018 -1.900 1.526 H11 A1IA8 34 A1IA8 H12 H9 H 0 1 N N N N N N -2.726 -9.099 35.376 0.540 0.066 1.546 H12 A1IA8 35 A1IA8 H3 H10 H 0 1 N N N N N N -5.181 -5.057 35.954 -2.553 3.124 -0.333 H3 A1IA8 36 A1IA8 H2 H11 H 0 1 N N N N N N -5.501 -7.153 36.739 -0.033 0.310 -1.969 H2 A1IA8 37 A1IA8 H1 H12 H 0 1 N N N N N N -2.761 -8.721 40.788 -2.516 -3.453 -1.590 H1 A1IA8 38 A1IA8 H H13 H 0 1 N N N N N N 0.798 -7.657 39.041 -4.931 -0.748 2.786 H A1IA8 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IA8 O C SING N N 1 A1IA8 O1 C DOUB N N 2 A1IA8 C C1 SING N N 3 A1IA8 C1 C2 DOUB N N 4 A1IA8 O2 C2 SING N N 5 A1IA8 C2 C3 SING N N 6 A1IA8 O3 C3 DOUB N N 7 A1IA8 C3 N SING N N 8 A1IA8 N C4 SING N N 9 A1IA8 N1 C4 DOUB N N 10 A1IA8 C1 N1 SING N N 11 A1IA8 C4 C5 SING N N 12 A1IA8 C5 C6 DOUB Y N 13 A1IA8 C6 C7 SING Y N 14 A1IA8 C7 C8 DOUB Y N 15 A1IA8 C8 C9 SING Y N 16 A1IA8 C9 C10 DOUB Y N 17 A1IA8 C5 C10 SING Y N 18 A1IA8 C10 C11 SING N N 19 A1IA8 C11 C12 DOUB Y N 20 A1IA8 C12 C13 SING Y N 21 A1IA8 C13 C14 DOUB Y N 22 A1IA8 C14 C15 SING N N 23 A1IA8 C15 C16 SING N N 24 A1IA8 C16 N2 TRIP N N 25 A1IA8 C17 C14 SING Y N 26 A1IA8 C18 C17 DOUB Y N 27 A1IA8 C11 C18 SING Y N 28 A1IA8 C7 H4 SING N N 29 A1IA8 C8 H5 SING N N 30 A1IA8 C9 H6 SING N N 31 A1IA8 C12 H7 SING N N 32 A1IA8 C13 H8 SING N N 33 A1IA8 C15 H10 SING N N 34 A1IA8 C15 H9 SING N N 35 A1IA8 C17 H11 SING N N 36 A1IA8 C18 H12 SING N N 37 A1IA8 C6 H3 SING N N 38 A1IA8 N H2 SING N N 39 A1IA8 O2 H1 SING N N 40 A1IA8 O H SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IA8 InChI InChI 1.06 "InChI=1S/C19H13N3O4/c20-10-9-11-5-7-12(8-6-11)13-3-1-2-4-14(13)17-21-15(19(25)26)16(23)18(24)22-17/h1-8,23H,9H2,(H,25,26)(H,21,22,24)" A1IA8 InChIKey InChI 1.06 DQXZBDKWVUQVCP-UHFFFAOYSA-N A1IA8 SMILES_CANONICAL CACTVS 3.385 "OC(=O)C1=C(O)C(=O)NC(=N1)c2ccccc2c3ccc(CC#N)cc3" A1IA8 SMILES CACTVS 3.385 "OC(=O)C1=C(O)C(=O)NC(=N1)c2ccccc2c3ccc(CC#N)cc3" A1IA8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2ccc(cc2)CC#N)C3=NC(=C(C(=O)N3)O)C(=O)O" A1IA8 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2ccc(cc2)CC#N)C3=NC(=C(C(=O)N3)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IA8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-[4-(cyanomethyl)phenyl]phenyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IA8 "Create component" 2024-05-10 PDBE A1IA8 "Initial release" 2024-07-03 RCSB #