data_A1IAP # _chem_comp.id A1IAP _chem_comp.name "1-methyl-4-[(2S)-2-naphthalen-1-yl-2-propylsulfanyl-ethyl]-4H-pyridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CHITOTRIOSE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-08 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IAP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F84 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IAP C13 C1 C 0 1 N N N N N N 7.642 3.603 65.539 -1.059 2.957 0.076 C13 A1IAP 1 A1IAP C23 C2 C 0 1 Y N N N N N 9.470 1.642 62.154 1.497 -1.448 -0.340 C23 A1IAP 2 A1IAP C12 C3 C 0 1 N N N N N N 6.834 4.673 65.929 -0.150 3.895 -0.076 C12 A1IAP 3 A1IAP C22 C4 C 0 1 Y N N N N N 8.538 0.675 61.718 1.606 -1.345 -1.737 C22 A1IAP 4 A1IAP C11 C5 C 0 1 N N N N N N 5.876 6.158 67.630 2.210 4.516 -0.476 C11 A1IAP 5 A1IAP C21 C6 C 0 1 Y N N N N N 8.321 0.447 60.377 2.798 -1.604 -2.340 C21 A1IAP 6 A1IAP C01 C7 C 0 1 N N N N N N 11.259 -3.004 66.368 -6.251 -0.766 -0.940 C01 A1IAP 7 A1IAP C02 C8 C 0 1 N N N N N N 12.114 -1.947 65.607 -5.111 -1.030 0.047 C02 A1IAP 8 A1IAP C03 C9 C 0 1 N N N N N N 11.446 -0.560 65.473 -3.772 -0.730 -0.628 C03 A1IAP 9 A1IAP C05 C10 C 0 1 N N S N N N 8.973 1.137 64.643 -0.938 -0.791 -0.471 C05 A1IAP 10 A1IAP C06 C11 C 0 1 N N N N N N 9.238 1.752 66.035 -0.833 0.683 -0.864 C06 A1IAP 11 A1IAP C07 C12 C 0 1 N N N N N N 8.388 2.860 66.463 -0.684 1.538 0.396 C07 A1IAP 12 A1IAP C08 C13 C 0 1 N N N N N N 8.290 3.260 67.822 0.732 1.451 0.887 C08 A1IAP 13 A1IAP C09 C14 C 0 1 N N N N N N 7.485 4.324 68.197 1.587 2.435 0.711 C09 A1IAP 14 A1IAP C14 C15 C 0 1 Y N N N N N 9.700 1.911 63.566 0.283 -1.188 0.319 C14 A1IAP 15 A1IAP C15 C16 C 0 1 Y N N N N N 10.634 2.870 63.862 0.215 -1.298 1.674 C15 A1IAP 16 A1IAP C16 C17 C 0 1 Y N N N N N 11.337 3.582 62.844 1.333 -1.664 2.421 C16 A1IAP 17 A1IAP C17 C18 C 0 1 Y N N N N N 11.105 3.342 61.525 2.525 -1.923 1.818 C17 A1IAP 18 A1IAP C18 C19 C 0 1 Y N N N N N 10.157 2.359 61.156 2.635 -1.816 0.421 C18 A1IAP 19 A1IAP C19 C20 C 0 1 Y N N N N N 9.951 2.102 59.754 3.849 -2.075 -0.238 C19 A1IAP 20 A1IAP C20 C21 C 0 1 Y N N N N N 9.029 1.163 59.386 3.916 -1.969 -1.593 C20 A1IAP 21 A1IAP N10 N1 N 0 1 N N N N N N 6.757 5.035 67.235 1.200 3.599 0.058 N10 A1IAP 22 A1IAP S04 S1 S 0 1 N N N N N N 9.710 -0.605 64.814 -2.421 -1.043 0.542 S04 A1IAP 23 A1IAP H131 H1 H 0 0 N N N N N N 7.693 3.340 64.493 -2.103 3.214 -0.028 H131 A1IAP 24 A1IAP H121 H2 H 0 0 N N N N N N 6.267 5.216 65.187 -0.456 4.905 -0.308 H121 A1IAP 25 A1IAP H221 H3 H 0 0 N N N N N N 7.985 0.104 62.449 0.748 -1.062 -2.329 H221 A1IAP 26 A1IAP H113 H4 H 0 0 N N N N N N 5.397 6.581 66.735 2.481 5.243 0.289 H113 A1IAP 27 A1IAP H111 H5 H 0 0 N N N N N N 5.102 5.792 68.321 3.095 3.950 -0.770 H111 A1IAP 28 A1IAP H112 H6 H 0 0 N N N N N N 6.474 6.935 68.128 1.806 5.035 -1.345 H112 A1IAP 29 A1IAP H211 H7 H 0 0 N N N N N N 7.595 -0.294 60.077 2.879 -1.524 -3.414 H211 A1IAP 30 A1IAP H012 H8 H 0 0 N N N N N N 11.809 -3.956 66.416 -7.205 -0.979 -0.458 H012 A1IAP 31 A1IAP H011 H9 H 0 0 N N N N N N 11.057 -2.646 67.388 -6.226 0.278 -1.252 H011 A1IAP 32 A1IAP H013 H10 H 0 0 N N N N N N 10.308 -3.157 65.837 -6.132 -1.409 -1.812 H013 A1IAP 33 A1IAP H021 H11 H 0 0 N N N N N N 13.064 -1.820 66.147 -5.230 -0.387 0.919 H021 A1IAP 34 A1IAP H022 H12 H 0 0 N N N N N N 12.315 -2.331 64.596 -5.136 -2.074 0.360 H022 A1IAP 35 A1IAP H031 H13 H 0 0 N N N N N N 11.424 -0.091 66.468 -3.653 -1.373 -1.500 H031 A1IAP 36 A1IAP H032 H14 H 0 0 N N N N N N 12.057 0.052 64.792 -3.748 0.314 -0.941 H032 A1IAP 37 A1IAP H051 H15 H 0 0 N N N N N N 7.898 1.030 64.435 -1.003 -1.404 -1.370 H051 A1IAP 38 A1IAP H062 H16 H 0 0 N N N N N N 10.277 2.114 66.041 0.037 0.827 -1.505 H062 A1IAP 39 A1IAP H061 H17 H 0 0 N N N N N N 9.126 0.947 66.776 -1.733 0.981 -1.401 H061 A1IAP 40 A1IAP H081 H18 H 0 0 N N N N N N 8.851 2.727 68.575 1.056 0.557 1.398 H081 A1IAP 41 A1IAP H091 H19 H 0 0 N N N N N N 7.419 4.606 69.237 2.600 2.335 1.073 H091 A1IAP 42 A1IAP H151 H20 H 0 0 N N N N N N 10.844 3.094 64.897 -0.719 -1.097 2.178 H151 A1IAP 43 A1IAP H161 H21 H 0 0 N N N N N N 12.067 4.326 63.126 1.253 -1.742 3.495 H161 A1IAP 44 A1IAP H171 H22 H 0 0 N N N N N N 11.639 3.896 60.767 3.383 -2.205 2.410 H171 A1IAP 45 A1IAP H191 H23 H 0 0 N N N N N N 10.515 2.641 59.007 4.723 -2.363 0.328 H191 A1IAP 46 A1IAP H201 H24 H 0 0 N N N N N N 8.842 0.969 58.340 4.850 -2.169 -2.097 H201 A1IAP 47 A1IAP H1 H25 H 0 1 N N N N N N 7.544 2.168 66.599 -1.354 1.157 1.167 H1 A1IAP 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IAP C02 C01 SING N N 1 A1IAP C03 C02 SING N N 2 A1IAP S04 C03 SING N N 3 A1IAP C05 S04 SING N N 4 A1IAP C07 C06 SING N N 5 A1IAP C08 C07 SING N N 6 A1IAP C09 C08 DOUB N N 7 A1IAP N10 C09 SING N N 8 A1IAP C11 N10 SING N N 9 A1IAP C12 N10 SING N N 10 A1IAP C13 C12 DOUB N N 11 A1IAP C06 C05 SING N N 12 A1IAP C14 C05 SING N N 13 A1IAP C15 C14 DOUB Y N 14 A1IAP C16 C15 SING Y N 15 A1IAP C17 C16 DOUB Y N 16 A1IAP C18 C17 SING Y N 17 A1IAP C19 C18 SING Y N 18 A1IAP C20 C19 DOUB Y N 19 A1IAP C21 C20 SING Y N 20 A1IAP C22 C21 DOUB Y N 21 A1IAP C23 C22 SING Y N 22 A1IAP C07 C13 SING N N 23 A1IAP C14 C23 SING Y N 24 A1IAP C18 C23 DOUB Y N 25 A1IAP C13 H131 SING N N 26 A1IAP C12 H121 SING N N 27 A1IAP C22 H221 SING N N 28 A1IAP C11 H113 SING N N 29 A1IAP C11 H111 SING N N 30 A1IAP C11 H112 SING N N 31 A1IAP C21 H211 SING N N 32 A1IAP C01 H012 SING N N 33 A1IAP C01 H011 SING N N 34 A1IAP C01 H013 SING N N 35 A1IAP C02 H021 SING N N 36 A1IAP C02 H022 SING N N 37 A1IAP C03 H031 SING N N 38 A1IAP C03 H032 SING N N 39 A1IAP C05 H051 SING N N 40 A1IAP C06 H062 SING N N 41 A1IAP C06 H061 SING N N 42 A1IAP C08 H081 SING N N 43 A1IAP C09 H091 SING N N 44 A1IAP C15 H151 SING N N 45 A1IAP C16 H161 SING N N 46 A1IAP C17 H171 SING N N 47 A1IAP C19 H191 SING N N 48 A1IAP C20 H201 SING N N 49 A1IAP C07 H1 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IAP InChI InChI 1.06 "InChI=1S/C21H25NS/c1-3-15-23-21(16-17-11-13-22(2)14-12-17)20-10-6-8-18-7-4-5-9-19(18)20/h4-14,17,21H,3,15-16H2,1-2H3/t21-/m0/s1" A1IAP InChIKey InChI 1.06 BKPMCVBRTHNXHQ-NRFANRHFSA-N A1IAP SMILES_CANONICAL CACTVS 3.385 "CCCS[C@@H](CC1C=CN(C)C=C1)c2cccc3ccccc23" A1IAP SMILES CACTVS 3.385 "CCCS[CH](CC1C=CN(C)C=C1)c2cccc3ccccc23" A1IAP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCS[C@@H](CC1C=CN(C=C1)C)c2cccc3c2cccc3" A1IAP SMILES "OpenEye OEToolkits" 2.0.7 "CCCSC(CC1C=CN(C=C1)C)c2cccc3c2cccc3" # _pdbx_chem_comp_identifier.comp_id A1IAP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-methyl-4-[(2~{S})-2-naphthalen-1-yl-2-propylsulfanyl-ethyl]-4~{H}-pyridine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IAP "Create component" 2024-05-08 PDBE A1IAP "Initial release" 2025-05-21 RCSB #