data_A1IB3 # _chem_comp.id A1IB3 _chem_comp.name "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-cyclopropyl-~{N}-(2-hydroxyethyl)-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 F3 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-20 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FDB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IB3 N1 N1 N 0 1 N N N N N N -21.177 10.400 -1.102 4.148 1.627 -0.131 N1 A1IB3 1 A1IB3 N3 N2 N 0 1 Y N N N N N -13.290 8.087 -1.702 -2.387 -1.410 2.066 N3 A1IB3 2 A1IB3 C4 C1 C 0 1 Y N N N N N -13.287 8.486 -0.412 -2.549 -0.736 0.914 C4 A1IB3 3 A1IB3 C5 C2 C 0 1 N N N N N N -21.560 8.862 -3.143 4.605 2.911 2.037 C5 A1IB3 4 A1IB3 C6 C3 C 0 1 N N N N N N -19.775 10.408 -0.792 3.601 0.598 -0.808 C6 A1IB3 5 A1IB3 C7 C4 C 0 1 N N R N N N -18.989 9.216 -1.222 3.027 -0.577 -0.058 C7 A1IB3 6 A1IB3 C8 C5 C 0 1 N N N N N N -22.901 9.439 -2.754 5.423 1.619 2.089 C8 A1IB3 7 A1IB3 C13 C6 C 0 1 Y N N N N N -9.718 9.074 0.551 -4.997 1.050 -1.317 C13 A1IB3 8 A1IB3 C15 C7 C 0 1 Y N N N N N -11.022 8.878 2.561 -6.170 0.244 0.621 C15 A1IB3 9 A1IB3 C17 C8 C 0 1 Y N N N N N -14.595 8.571 -0.021 -1.319 -0.689 0.324 C17 A1IB3 10 A1IB3 OP3 O1 O 0 1 N N N N N N -22.127 9.961 1.468 3.211 4.367 -0.058 OP3 A1IB3 11 A1IB3 C1 C9 C 0 1 N N N N N N -22.975 10.644 0.526 3.741 3.767 -1.242 C1 A1IB3 12 A1IB3 C2 C10 C 0 1 N N N N N N -22.126 11.355 -0.527 4.791 2.723 -0.859 C2 A1IB3 13 A1IB3 C3 C11 C 0 1 N N N N N N -21.834 9.220 -1.679 4.094 1.652 1.333 C3 A1IB3 14 A1IB3 "C5'" C12 C 0 1 N N R N N N -17.479 9.422 -1.095 1.546 -0.322 0.234 "C5'" A1IB3 15 A1IB3 C9 C13 C 0 1 N N S N N N -16.748 8.120 -1.345 0.955 -1.545 0.943 C9 A1IB3 16 A1IB3 N2 N3 N 0 1 Y N N N N N -15.300 8.244 -1.085 -0.479 -1.341 1.159 N2 A1IB3 17 A1IB3 NAA N4 N 0 1 Y N N N N N -14.530 7.939 -2.092 -1.152 -1.751 2.176 NAA A1IB3 18 A1IB3 C11 C14 C 0 1 Y N N N N N -12.081 8.717 0.418 -3.813 -0.161 0.388 C11 A1IB3 19 A1IB3 C12 C15 C 0 1 Y N N N N N -10.854 8.898 -0.213 -3.819 0.515 -0.830 C12 A1IB3 20 A1IB3 F1 F1 F 0 1 N N N N N N -8.488 9.260 -0.052 -5.004 1.700 -2.501 F1 A1IB3 21 A1IB3 C14 C16 C 0 1 Y N N N N N -12.167 8.696 1.804 -4.995 -0.294 1.112 C14 A1IB3 22 A1IB3 F2 F2 F 0 1 N N N N N N -11.083 8.861 3.938 -7.317 0.116 1.323 F2 A1IB3 23 A1IB3 C16 C17 C 0 1 Y N N N N N -9.810 9.070 1.929 -6.172 0.915 -0.593 C16 A1IB3 24 A1IB3 F3 F3 F 0 1 N N N N N N -8.665 9.259 2.672 -7.321 1.440 -1.071 F3 A1IB3 25 A1IB3 "O5'" O2 O 0 1 N N N N N N -17.040 10.403 -2.048 1.416 0.827 1.074 "O5'" A1IB3 26 A1IB3 "O2'" O3 O 0 1 N N N N N N -19.420 8.151 -0.385 3.158 -1.758 -0.851 "O2'" A1IB3 27 A1IB3 "C2'" C18 C 0 1 N N R N N N -18.809 6.906 -0.679 2.665 -2.942 -0.220 "C2'" A1IB3 28 A1IB3 "C3'" C19 C 0 1 N N N N N N -19.426 5.846 0.211 2.883 -4.141 -1.145 "C3'" A1IB3 29 A1IB3 "O3'" O4 O 0 1 N N N N N N -20.830 5.814 -0.005 4.284 -4.361 -1.318 "O3'" A1IB3 30 A1IB3 "C1'" C20 C 0 1 N N R N N N -17.317 7.026 -0.459 1.170 -2.782 0.066 "C1'" A1IB3 31 A1IB3 "O4'" O5 O 0 1 N N N N N N -17.060 7.339 0.913 0.463 -2.623 -1.166 "O4'" A1IB3 32 A1IB3 O6 O6 O 0 1 N N N N N N -19.255 11.289 -0.147 3.570 0.617 -2.020 O6 A1IB3 33 A1IB3 H9 H1 H 0 1 N N N N N N -21.483 7.807 -3.445 4.094 3.220 2.949 H9 A1IB3 34 A1IB3 H10 H2 H 0 1 N N N N N N -20.853 9.465 -3.732 4.982 3.720 1.411 H10 A1IB3 35 A1IB3 H11 H3 H 0 1 N N N N N N -19.225 8.990 -2.272 3.565 -0.707 0.881 H11 A1IB3 36 A1IB3 H8 H4 H 0 1 N N N N N N -23.169 10.461 -3.061 6.338 1.579 1.498 H8 A1IB3 37 A1IB3 H7 H5 H 0 1 N N N N N N -23.798 8.803 -2.774 5.451 1.079 3.036 H7 A1IB3 38 A1IB3 H16 H6 H 0 1 N N N N N N -14.970 8.848 0.953 -1.068 -0.225 -0.618 H16 A1IB3 39 A1IB3 H1 H7 H 0 1 N N N N N N -22.664 9.523 2.118 2.538 5.040 -0.226 H1 A1IB3 40 A1IB3 H3 H8 H 0 1 N N N N N N -23.588 11.385 1.060 2.935 3.285 -1.797 H3 A1IB3 41 A1IB3 H2 H9 H 0 1 N N N N N N -23.631 9.913 0.031 4.201 4.535 -1.864 H2 A1IB3 42 A1IB3 H5 H10 H 0 1 N N N N N N -21.576 12.184 -0.058 5.549 3.185 -0.226 H5 A1IB3 43 A1IB3 H4 H11 H 0 1 N N N N N N -22.778 11.750 -1.320 5.262 2.333 -1.762 H4 A1IB3 44 A1IB3 H6 H12 H 0 1 N N N N N N -22.005 8.368 -1.005 3.247 1.134 1.781 H6 A1IB3 45 A1IB3 H12 H13 H 0 1 N N N N N N -17.255 9.765 -0.074 1.014 -0.151 -0.702 H12 A1IB3 46 A1IB3 H13 H14 H 0 1 N N N N N N -16.899 7.831 -2.395 1.452 -1.686 1.903 H13 A1IB3 47 A1IB3 H14 H15 H 0 1 N N N N N N -10.791 8.901 -1.291 -2.904 0.619 -1.395 H14 A1IB3 48 A1IB3 H15 H16 H 0 1 N N N N N N -13.120 8.539 2.288 -4.994 -0.816 2.058 H15 A1IB3 49 A1IB3 H17 H17 H 0 1 N N N N N N -17.497 11.222 -1.894 1.678 1.656 0.650 H17 A1IB3 50 A1IB3 H18 H18 H 0 1 N N N N N N -18.991 6.635 -1.729 3.199 -3.104 0.716 H18 A1IB3 51 A1IB3 H19 H19 H 0 1 N N N N N N -18.994 4.864 -0.032 2.428 -5.028 -0.704 H19 A1IB3 52 A1IB3 H20 H20 H 0 1 N N N N N N -19.221 6.086 1.265 2.424 -3.941 -2.113 H20 A1IB3 53 A1IB3 H21 H21 H 0 1 N N N N N N -21.221 5.151 0.551 4.497 -5.108 -1.895 H21 A1IB3 54 A1IB3 H22 H22 H 0 1 N N N N N N -16.840 6.071 -0.723 0.802 -3.666 0.587 H22 A1IB3 55 A1IB3 H23 H23 H 0 1 N N N N N N -17.416 6.654 1.467 0.554 -3.372 -1.771 H23 A1IB3 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IB3 C5 C8 SING N N 1 A1IB3 C5 C3 SING N N 2 A1IB3 C8 C3 SING N N 3 A1IB3 NAA N3 DOUB Y N 4 A1IB3 NAA N2 SING Y N 5 A1IB3 "O5'" "C5'" SING N N 6 A1IB3 N3 C4 SING Y N 7 A1IB3 C3 N1 SING N N 8 A1IB3 C9 "C5'" SING N N 9 A1IB3 C9 N2 SING N N 10 A1IB3 C9 "C1'" SING N N 11 A1IB3 C7 "C5'" SING N N 12 A1IB3 C7 C6 SING N N 13 A1IB3 C7 "O2'" SING N N 14 A1IB3 N1 C6 SING N N 15 A1IB3 N1 C2 SING N N 16 A1IB3 N2 C17 SING Y N 17 A1IB3 C6 O6 DOUB N N 18 A1IB3 "C2'" "C1'" SING N N 19 A1IB3 "C2'" "O2'" SING N N 20 A1IB3 "C2'" "C3'" SING N N 21 A1IB3 C2 C1 SING N N 22 A1IB3 "C1'" "O4'" SING N N 23 A1IB3 C4 C17 DOUB Y N 24 A1IB3 C4 C11 SING N N 25 A1IB3 C12 C11 DOUB Y N 26 A1IB3 C12 C13 SING Y N 27 A1IB3 F1 C13 SING N N 28 A1IB3 "O3'" "C3'" SING N N 29 A1IB3 C11 C14 SING Y N 30 A1IB3 C1 OP3 SING N N 31 A1IB3 C13 C16 DOUB Y N 32 A1IB3 C14 C15 DOUB Y N 33 A1IB3 C16 C15 SING Y N 34 A1IB3 C16 F3 SING N N 35 A1IB3 C15 F2 SING N N 36 A1IB3 C5 H9 SING N N 37 A1IB3 C5 H10 SING N N 38 A1IB3 C7 H11 SING N N 39 A1IB3 C8 H8 SING N N 40 A1IB3 C8 H7 SING N N 41 A1IB3 C17 H16 SING N N 42 A1IB3 OP3 H1 SING N N 43 A1IB3 C1 H3 SING N N 44 A1IB3 C1 H2 SING N N 45 A1IB3 C2 H5 SING N N 46 A1IB3 C2 H4 SING N N 47 A1IB3 C3 H6 SING N N 48 A1IB3 "C5'" H12 SING N N 49 A1IB3 C9 H13 SING N N 50 A1IB3 C12 H14 SING N N 51 A1IB3 C14 H15 SING N N 52 A1IB3 "O5'" H17 SING N N 53 A1IB3 "C2'" H18 SING N N 54 A1IB3 "C3'" H19 SING N N 55 A1IB3 "C3'" H20 SING N N 56 A1IB3 "O3'" H21 SING N N 57 A1IB3 "C1'" H22 SING N N 58 A1IB3 "O4'" H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IB3 InChI InChI 1.06 "InChI=1S/C20H23F3N4O6/c21-11-5-9(6-12(22)15(11)23)13-7-27(25-24-13)16-17(30)14(8-29)33-19(18(16)31)20(32)26(3-4-28)10-1-2-10/h5-7,10,14,16-19,28-31H,1-4,8H2/t14-,16+,17+,18-,19-/m1/s1" A1IB3 InChIKey InChI 1.06 XFYVGVWUFSLCMZ-QFACEVIFSA-N A1IB3 SMILES_CANONICAL CACTVS 3.385 "OCCN(C1CC1)C(=O)[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4cc(F)c(F)c(F)c4" A1IB3 SMILES CACTVS 3.385 "OCCN(C1CC1)C(=O)[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4cc(F)c(F)c(F)c4" A1IB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1F)F)F)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)C(=O)N(CCO)C4CC4)CO)O" A1IB3 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1F)F)F)c2cn(nn2)C3C(C(OC(C3O)C(=O)N(CCO)C4CC4)CO)O" # _pdbx_chem_comp_identifier.comp_id A1IB3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-cyclopropyl-~{N}-(2-hydroxyethyl)-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IB3 "Create component" 2024-05-20 PDBE A1IB3 "Initial release" 2025-03-26 RCSB #