data_A1IB4 # _chem_comp.id A1IB4 _chem_comp.name "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-[3,5-bis(chloranyl)phenyl]-6-(hydroxymethyl)-~{N}-methyl-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 Cl2 F3 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-20 _chem_comp.pdbx_modified_date 2025-03-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 547.311 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IB4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9FDC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IB4 N3 N1 N 0 1 Y N N N N N -14.976 7.794 -2.043 -3.071 -2.160 1.910 N3 A1IB4 1 A1IB4 C4 C1 C 0 1 N N N N N N -22.250 11.589 -1.496 3.077 -0.773 2.256 C4 A1IB4 2 A1IB4 C6 C2 C 0 1 Y N N N N N -11.380 8.843 -0.127 -6.000 0.757 0.944 C6 A1IB4 3 A1IB4 C7 C3 C 0 1 Y N N N N N -12.606 8.661 0.490 -4.748 0.593 0.356 C7 A1IB4 4 A1IB4 C8 C4 C 0 1 Y N N N N N -21.996 9.448 -2.633 4.117 0.581 0.455 C8 A1IB4 5 A1IB4 C10 C5 C 0 1 Y N N N N N -12.713 8.618 1.872 -4.346 1.447 -0.668 C10 A1IB4 6 A1IB4 C13 C6 C 0 1 Y N N N N N -15.122 8.450 0.039 -2.596 -0.773 0.349 C13 A1IB4 7 A1IB4 C15 C7 C 0 1 N N N N N N -19.917 5.531 0.192 0.376 -5.154 -1.580 C15 A1IB4 8 A1IB4 C20 C8 C 0 1 Y N N N N N -23.231 7.622 -4.355 5.828 2.622 -0.300 C20 A1IB4 9 A1IB4 C21 C9 C 0 1 Y N N N N N -23.230 7.395 -2.994 5.021 2.012 -1.244 C21 A1IB4 10 A1IB4 C22 C10 C 0 1 Y N N N N N -22.677 8.335 -2.141 4.166 0.992 -0.870 C22 A1IB4 11 A1IB4 N9 N2 N 0 1 N N N N N N -21.464 10.383 -1.726 3.253 -0.451 0.837 N9 A1IB4 12 A1IB4 "C1'" C11 C 0 1 N N N N N N -20.229 10.173 -1.036 2.581 -1.149 -0.100 "C1'" A1IB4 13 A1IB4 "C2'" C12 C 0 1 N N R N N N -19.475 8.915 -1.368 1.542 -2.160 0.313 "C2'" A1IB4 14 A1IB4 "C3'" C13 C 0 1 N N R N N N -17.985 9.168 -1.165 0.206 -1.451 0.551 "C3'" A1IB4 15 A1IB4 "C4'" C14 C 0 1 N N S N N N -17.214 7.871 -1.361 -0.858 -2.492 0.912 "C4'" A1IB4 16 A1IB4 NAA N3 N 0 1 Y N N N N N -15.781 8.083 -1.055 -2.156 -1.832 1.067 NAA A1IB4 17 A1IB4 N2 N4 N 0 1 Y N N N N N -13.758 7.990 -1.635 -4.090 -1.384 1.795 N2 A1IB4 18 A1IB4 C2 C15 C 0 1 Y N N N N N -13.803 8.419 -0.354 -3.844 -0.488 0.822 C2 A1IB4 19 A1IB4 C9 C16 C 0 1 Y N N N N N -10.254 9.027 0.656 -6.839 1.766 0.509 C9 A1IB4 20 A1IB4 F1 F1 F 0 1 N N N N N N -9.025 9.228 0.068 -8.056 1.923 1.075 F1 A1IB4 21 A1IB4 C11 C17 C 0 1 Y N N N N N -11.573 8.812 2.637 -5.190 2.453 -1.099 C11 A1IB4 22 A1IB4 F2 F2 F 0 1 N N N N N N -11.631 8.802 4.010 -4.801 3.281 -2.093 F2 A1IB4 23 A1IB4 C12 C18 C 0 1 Y N N N N N -10.352 9.015 2.030 -6.434 2.617 -0.508 C12 A1IB4 24 A1IB4 F3 F3 F 0 1 N N N N N N -9.225 9.195 2.810 -7.257 3.601 -0.931 F3 A1IB4 25 A1IB4 "O3'" O1 O 0 1 N N N N N N -17.560 10.134 -2.126 0.345 -0.518 1.624 "O3'" A1IB4 26 A1IB4 "O2'" O2 O 0 1 N N N N N N -19.942 7.821 -0.556 1.386 -3.133 -0.721 "O2'" A1IB4 27 A1IB4 C14 C19 C 0 1 N N R N N N -19.291 6.561 -0.747 0.438 -4.159 -0.419 C14 A1IB4 28 A1IB4 OP3 O3 O 0 1 N N N N N N -21.320 5.434 -0.088 1.632 -5.824 -1.700 OP3 A1IB4 29 A1IB4 "C5'" C20 C 0 1 N N R N N N -17.787 6.748 -0.490 -0.942 -3.530 -0.211 "C5'" A1IB4 30 A1IB4 "O5'" O4 O 0 1 N N N N N N -17.558 7.043 0.890 -1.364 -2.894 -1.419 "O5'" A1IB4 31 A1IB4 O5 O5 O 0 1 N N N N N N -19.807 10.994 -0.226 2.813 -0.964 -1.276 O5 A1IB4 32 A1IB4 C18 C21 C 0 1 Y N N N N N -21.974 9.674 -4.005 4.932 1.191 1.400 C18 A1IB4 33 A1IB4 C19 C22 C 0 1 Y N N N N N -22.599 8.758 -4.852 5.785 2.210 1.020 C19 A1IB4 34 A1IB4 CL1 CL1 CL 0 0 N N N N N N -22.559 9.012 -6.636 6.804 2.973 2.201 CL1 A1IB4 35 A1IB4 CL2 CL2 CL 0 0 N N N N N N -24.114 5.974 -2.308 5.082 2.528 -2.901 CL2 A1IB4 36 A1IB4 H1 H1 H 0 1 N N N N N N -23.157 11.560 -2.117 2.319 -0.118 2.686 H1 A1IB4 37 A1IB4 H3 H2 H 0 1 N N N N N N -22.534 11.645 -0.435 2.760 -1.811 2.356 H3 A1IB4 38 A1IB4 H2 H3 H 0 1 N N N N N N -21.652 12.473 -1.762 4.022 -0.629 2.780 H2 A1IB4 39 A1IB4 H7 H4 H 0 1 N N N N N N -11.304 8.841 -1.204 -6.317 0.094 1.736 H7 A1IB4 40 A1IB4 H8 H5 H 0 1 N N N N N N -13.667 8.437 2.344 -3.375 1.323 -1.126 H8 A1IB4 41 A1IB4 H9 H6 H 0 1 N N N N N N -15.525 8.711 1.006 -2.066 -0.258 -0.439 H9 A1IB4 42 A1IB4 H13 H7 H 0 1 N N N N N N -19.441 4.552 0.035 -0.410 -5.885 -1.390 H13 A1IB4 43 A1IB4 H12 H8 H 0 1 N N N N N N -19.770 5.847 1.236 0.159 -4.620 -2.505 H12 A1IB4 44 A1IB4 H18 H9 H 0 1 N N N N N N -23.716 6.928 -5.025 6.495 3.418 -0.595 H18 A1IB4 45 A1IB4 H19 H10 H 0 1 N N N N N N -22.775 8.204 -1.074 3.537 0.516 -1.607 H19 A1IB4 46 A1IB4 H4 H11 H 0 1 N N N N N N -19.642 8.678 -2.429 1.860 -2.653 1.232 H4 A1IB4 47 A1IB4 H5 H12 H 0 1 N N N N N N -17.817 9.539 -0.143 -0.092 -0.924 -0.355 H5 A1IB4 48 A1IB4 H6 H13 H 0 1 N N N N N N -17.310 7.569 -2.414 -0.585 -2.984 1.845 H6 A1IB4 49 A1IB4 H10 H14 H 0 1 N N N N N N -16.632 10.305 -2.015 0.948 0.214 1.434 H10 A1IB4 50 A1IB4 H11 H15 H 0 1 N N N N N N -19.429 6.221 -1.784 0.742 -4.679 0.489 H11 A1IB4 51 A1IB4 H14 H16 H 0 1 N N N N N N -21.716 4.795 0.493 1.665 -6.472 -2.418 H14 A1IB4 52 A1IB4 H15 H17 H 0 1 N N N N N N -17.275 5.812 -0.756 -1.658 -4.306 0.061 H15 A1IB4 53 A1IB4 H16 H18 H 0 1 N N N N N N -16.627 7.157 1.040 -1.435 -3.493 -2.175 H16 A1IB4 54 A1IB4 H17 H19 H 0 1 N N N N N N -21.480 10.546 -4.409 4.898 0.869 2.431 H17 A1IB4 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IB4 C4 N9 SING N N 1 A1IB4 "C1'" N9 SING N N 2 A1IB4 "C1'" "C2'" SING N N 3 A1IB4 "C2'" "C3'" SING N N 4 A1IB4 "C3'" "C4'" SING N N 5 A1IB4 "C4'" NAA SING N N 6 A1IB4 NAA N3 SING Y N 7 A1IB4 N3 N2 DOUB Y N 8 A1IB4 C2 N2 SING Y N 9 A1IB4 C2 C7 SING N N 10 A1IB4 C7 C6 DOUB Y N 11 A1IB4 C6 C9 SING Y N 12 A1IB4 C9 F1 SING N N 13 A1IB4 C7 C10 SING Y N 14 A1IB4 C10 C11 DOUB Y N 15 A1IB4 C11 F2 SING N N 16 A1IB4 C11 C12 SING Y N 17 A1IB4 C12 F3 SING N N 18 A1IB4 C2 C13 DOUB Y N 19 A1IB4 "C3'" "O3'" SING N N 20 A1IB4 "C2'" "O2'" SING N N 21 A1IB4 C14 "O2'" SING N N 22 A1IB4 C14 C15 SING N N 23 A1IB4 C15 OP3 SING N N 24 A1IB4 C14 "C5'" SING N N 25 A1IB4 "C5'" "O5'" SING N N 26 A1IB4 "C1'" O5 DOUB N N 27 A1IB4 C8 N9 SING N N 28 A1IB4 C8 C18 SING Y N 29 A1IB4 C18 C19 DOUB Y N 30 A1IB4 C19 CL1 SING N N 31 A1IB4 C19 C20 SING Y N 32 A1IB4 C20 C21 DOUB Y N 33 A1IB4 C21 CL2 SING N N 34 A1IB4 C21 C22 SING Y N 35 A1IB4 "C5'" "C4'" SING N N 36 A1IB4 C22 C8 DOUB Y N 37 A1IB4 C13 NAA SING Y N 38 A1IB4 C12 C9 DOUB Y N 39 A1IB4 C4 H1 SING N N 40 A1IB4 C4 H3 SING N N 41 A1IB4 C4 H2 SING N N 42 A1IB4 C6 H7 SING N N 43 A1IB4 C10 H8 SING N N 44 A1IB4 C13 H9 SING N N 45 A1IB4 C15 H13 SING N N 46 A1IB4 C15 H12 SING N N 47 A1IB4 C20 H18 SING N N 48 A1IB4 C22 H19 SING N N 49 A1IB4 "C2'" H4 SING N N 50 A1IB4 "C3'" H5 SING N N 51 A1IB4 "C4'" H6 SING N N 52 A1IB4 "O3'" H10 SING N N 53 A1IB4 C14 H11 SING N N 54 A1IB4 OP3 H14 SING N N 55 A1IB4 "C5'" H15 SING N N 56 A1IB4 "O5'" H16 SING N N 57 A1IB4 C18 H17 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IB4 InChI InChI 1.06 "InChI=1S/C22H19Cl2F3N4O5/c1-30(12-5-10(23)4-11(24)6-12)22(35)21-20(34)18(19(33)16(8-32)36-21)31-7-15(28-29-31)9-2-13(25)17(27)14(26)3-9/h2-7,16,18-21,32-34H,8H2,1H3/t16-,18+,19+,20-,21-/m1/s1" A1IB4 InChIKey InChI 1.06 SEOMSSBVKBAYLW-OBJCFNGXSA-N A1IB4 SMILES_CANONICAL CACTVS 3.385 "CN(C(=O)[C@@H]1O[C@H](CO)[C@H](O)[C@@H]([C@H]1O)n2cc(nn2)c3cc(F)c(F)c(F)c3)c4cc(Cl)cc(Cl)c4" A1IB4 SMILES CACTVS 3.385 "CN(C(=O)[CH]1O[CH](CO)[CH](O)[CH]([CH]1O)n2cc(nn2)c3cc(F)c(F)c(F)c3)c4cc(Cl)cc(Cl)c4" A1IB4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(c1cc(cc(c1)Cl)Cl)C(=O)[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)n3cc(nn3)c4cc(c(c(c4)F)F)F)O" A1IB4 SMILES "OpenEye OEToolkits" 2.0.7 "CN(c1cc(cc(c1)Cl)Cl)C(=O)C2C(C(C(C(O2)CO)O)n3cc(nn3)c4cc(c(c(c4)F)F)F)O" # _pdbx_chem_comp_identifier.comp_id A1IB4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-[3,5-bis(chloranyl)phenyl]-6-(hydroxymethyl)-~{N}-methyl-3,5-bis(oxidanyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IB4 "Create component" 2024-05-20 PDBE A1IB4 "Initial release" 2025-03-26 RCSB #