data_A1IC0 # _chem_comp.id A1IC0 _chem_comp.name "(2~{R},3~{R},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-2-(hydroxymethyl)-4-methoxy-oxolan-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N5 O4" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-04 _chem_comp.pdbx_modified_date 2024-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.321 _chem_comp.one_letter_code A _chem_comp.three_letter_code A1IC0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9F67 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IC0 N6 N1 N 0 1 N N N N N N 161.248 122.479 127.399 4.596 -0.909 -0.295 N11 A1IC0 1 A1IC0 "O4'" O1 O 0 1 N N N N N N 160.524 119.237 132.919 -2.264 -1.160 0.500 O18 A1IC0 2 A1IC0 "O3'" O2 O 0 1 N N N N N N 162.399 116.598 133.708 -4.209 1.684 -0.320 O20 A1IC0 3 A1IC0 "O2'" O3 O 0 1 N N N N N N 163.947 118.350 132.486 -1.743 2.288 -0.118 O19 A1IC0 4 A1IC0 N7 N2 N 0 1 Y N N N N N 162.148 121.993 130.012 1.634 -1.661 -0.637 N10 A1IC0 5 A1IC0 "O5'" O4 O 0 1 N N N N N N 159.907 116.684 135.191 -4.751 -2.653 0.769 O17 A1IC0 6 A1IC0 C4 C1 C 0 1 Y N N N N N 161.196 120.072 129.922 1.167 0.163 0.540 C37 A1IC0 7 A1IC0 C9 C2 C 0 1 N N N N N N 161.666 122.449 125.990 4.470 -1.085 -1.748 C38 A1IC0 8 A1IC0 "C3'" C3 C 0 1 N N R N N N 162.151 117.936 134.009 -3.389 0.566 -0.669 C39 A1IC0 9 A1IC0 "C4'" C4 C 0 1 N N R N N N 160.710 118.101 133.770 -3.579 -0.582 0.347 C36 A1IC0 10 A1IC0 "C5'" C5 C 0 1 N N N N N N 160.090 118.030 135.124 -4.557 -1.622 -0.202 C35 A1IC0 11 A1IC0 C10 C6 C 0 1 N N N N N N 161.131 123.728 128.166 5.874 -0.273 0.049 C01 A1IC0 12 A1IC0 C6 C7 C 0 1 Y N N N N N 160.965 121.330 128.004 3.530 -0.186 0.211 C02 A1IC0 13 A1IC0 C2 C8 C 0 1 Y N N N N N 159.987 119.193 128.096 2.723 1.623 1.395 C03 A1IC0 14 A1IC0 C5 C9 C 0 1 Y N N N N N 161.429 121.186 129.240 2.207 -0.612 0.002 C04 A1IC0 15 A1IC0 C8 C10 C 0 1 Y N N N N N 162.362 121.382 131.175 0.340 -1.580 -0.526 C05 A1IC0 16 A1IC0 "C1'" C11 C 0 1 N N R N N N 161.657 119.082 132.076 -1.356 -0.038 0.529 C06 A1IC0 17 A1IC0 "C2'" C12 C 0 1 N N R N N N 162.803 118.916 133.065 -1.893 0.933 -0.546 C07 A1IC0 18 A1IC0 C08 C13 C 0 1 N N N N N N 164.875 119.392 132.181 -1.555 3.218 -1.186 C08 A1IC0 19 A1IC0 N9 N3 N 0 1 Y N N N N N 161.771 120.194 131.111 0.002 -0.471 0.192 N01 A1IC0 20 A1IC0 N3 N4 N 0 1 Y N N N N N 160.488 119.069 129.389 1.469 1.263 1.224 N08 A1IC0 21 A1IC0 N1 N5 N 0 1 Y N N N N N 160.248 120.374 127.401 3.734 0.928 0.907 N09 A1IC0 22 A1IC0 "HO'3" H1 H 0 1 N N N N N N 161.959 116.044 134.342 -5.158 1.500 -0.349 H1 A1IC0 23 A1IC0 "H5'" H2 H 0 1 N N N N N N 159.506 116.460 136.022 -5.361 -3.348 0.488 H2 A1IC0 24 A1IC0 H91 H3 H 0 1 N N N N N N 161.861 123.474 125.643 4.449 -0.109 -2.232 H3 A1IC0 25 A1IC0 H92 H4 H 0 1 N N N N N N 162.582 121.848 125.892 5.320 -1.657 -2.120 H4 A1IC0 26 A1IC0 H93 H5 H 0 1 N N N N N N 160.867 122.001 125.380 3.546 -1.621 -1.971 H5 A1IC0 27 A1IC0 "H3'" H6 H 0 1 N N N N N N 162.407 118.180 135.051 -3.620 0.225 -1.678 H6 A1IC0 28 A1IC0 "H4'" H7 H 0 1 N N N N N N 160.370 117.213 133.217 -3.934 -0.191 1.300 H7 A1IC0 29 A1IC0 "H5'1" H8 H 0 1 N N N N N N 160.767 118.396 135.910 -4.152 -2.056 -1.116 H8 A1IC0 30 A1IC0 "H5'2" H9 H 0 1 N N N N N N 159.139 118.581 135.174 -5.512 -1.144 -0.419 H9 A1IC0 31 A1IC0 H101 H10 H 0 1 N N N N N N 160.804 123.500 129.191 5.973 -0.219 1.133 H10 A1IC0 32 A1IC0 H102 H11 H 0 1 N N N N N N 162.108 124.233 128.196 6.695 -0.862 -0.361 H11 A1IC0 33 A1IC0 H103 H12 H 0 1 N N N N N N 160.393 124.386 127.684 5.905 0.732 -0.370 H12 A1IC0 34 A1IC0 H2 H13 H 0 1 N N N N N N 159.413 118.398 127.644 2.934 2.523 1.955 H13 A1IC0 35 A1IC0 H8 H14 H 0 1 N N N N N N 162.914 121.778 132.015 -0.363 -2.287 -0.942 H14 A1IC0 36 A1IC0 "H1'" H15 H 0 1 N N N N N N 161.561 118.142 131.512 -1.371 0.437 1.510 H15 A1IC0 37 A1IC0 "H2'" H16 H 0 1 N N N N N N 163.016 119.867 133.575 -1.380 0.774 -1.495 H16 A1IC0 38 A1IC0 H17 H17 H 0 1 N N N N N N 165.777 118.958 131.726 -0.656 2.955 -1.743 H17 A1IC0 39 A1IC0 H18 H18 H 0 1 N N N N N N 164.413 120.100 131.477 -2.417 3.185 -1.853 H18 A1IC0 40 A1IC0 H19 H19 H 0 1 N N N N N N 165.149 119.921 133.106 -1.449 4.223 -0.779 H19 A1IC0 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IC0 C9 N6 SING N N 1 A1IC0 N6 C6 SING N N 2 A1IC0 N6 C10 SING N N 3 A1IC0 N1 C6 DOUB Y N 4 A1IC0 N1 C2 SING Y N 5 A1IC0 C6 C5 SING Y N 6 A1IC0 C2 N3 DOUB Y N 7 A1IC0 C5 C4 DOUB Y N 8 A1IC0 C5 N7 SING Y N 9 A1IC0 N3 C4 SING Y N 10 A1IC0 C4 N9 SING Y N 11 A1IC0 N7 C8 DOUB Y N 12 A1IC0 N9 C8 SING Y N 13 A1IC0 N9 "C1'" SING N N 14 A1IC0 "C1'" "O4'" SING N N 15 A1IC0 "C1'" "C2'" SING N N 16 A1IC0 C08 "O2'" SING N N 17 A1IC0 "O2'" "C2'" SING N N 18 A1IC0 "O4'" "C4'" SING N N 19 A1IC0 "C2'" "C3'" SING N N 20 A1IC0 "O3'" "C3'" SING N N 21 A1IC0 "C4'" "C3'" SING N N 22 A1IC0 "C4'" "C5'" SING N N 23 A1IC0 "C5'" "O5'" SING N N 24 A1IC0 "O3'" "HO'3" SING N N 25 A1IC0 "O5'" "H5'" SING N N 26 A1IC0 C9 H91 SING N N 27 A1IC0 C9 H92 SING N N 28 A1IC0 C9 H93 SING N N 29 A1IC0 "C3'" "H3'" SING N N 30 A1IC0 "C4'" "H4'" SING N N 31 A1IC0 "C5'" "H5'1" SING N N 32 A1IC0 "C5'" "H5'2" SING N N 33 A1IC0 C10 H101 SING N N 34 A1IC0 C10 H102 SING N N 35 A1IC0 C10 H103 SING N N 36 A1IC0 C2 H2 SING N N 37 A1IC0 C8 H8 SING N N 38 A1IC0 "C1'" "H1'" SING N N 39 A1IC0 "C2'" "H2'" SING N N 40 A1IC0 C08 H17 SING N N 41 A1IC0 C08 H18 SING N N 42 A1IC0 C08 H19 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IC0 InChI InChI 1.06 "InChI=1S/C13H19N5O4/c1-17(2)11-8-12(15-5-14-11)18(6-16-8)13-10(21-3)9(20)7(4-19)22-13/h5-7,9-10,13,19-20H,4H2,1-3H3/t7-,9-,10-,13-/m1/s1" A1IC0 InChIKey InChI 1.06 IPRQAJTUSRLECG-QYVSTXNMSA-N A1IC0 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(ncnc23)N(C)C" A1IC0 SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(ncnc23)N(C)C" A1IC0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)OC" A1IC0 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)O)OC" # _pdbx_chem_comp_identifier.comp_id A1IC0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-2-(hydroxymethyl)-4-methoxy-oxolan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IC0 "Create component" 2024-06-04 PDBE A1IC0 "Modify parent residue" 2024-06-07 PDBE A1IC0 "Initial release" 2024-12-25 RCSB #